data_7CZ4
#
_model_server_result.job_id            onHkAMEGWkSLAcXxFKc_Jg 
_model_server_result.datetime_utc      '2024-11-17 11:33:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cz4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    7CZ4 
#
_exptl.entry_id    7CZ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7CZ4 
_cell.length_a            84.736 
_cell.length_b            84.736 
_cell.length_c            143.242 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CZ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     7CZ4 
_atom_sites.fract_transf_matrix[1][1]    0.011801 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011801 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006981 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 APR A 1 201 201 APR APR . 
D 2 APR B 1 201 201 APR APR . 
E 3 HOH A 1 301 6 HOH HOH . 
E 3 HOH A 2 302 23 HOH HOH . 
E 3 HOH A 3 303 24 HOH HOH . 
E 3 HOH A 4 304 13 HOH HOH . 
E 3 HOH A 5 305 37 HOH HOH . 
E 3 HOH A 6 306 62 HOH HOH . 
E 3 HOH A 7 307 54 HOH HOH . 
E 3 HOH A 8 308 1 HOH HOH . 
E 3 HOH A 9 309 53 HOH HOH . 
E 3 HOH A 10 310 49 HOH HOH . 
E 3 HOH A 11 311 55 HOH HOH . 
E 3 HOH A 12 312 47 HOH HOH . 
E 3 HOH A 13 313 51 HOH HOH . 
E 3 HOH A 14 314 17 HOH HOH . 
E 3 HOH A 15 315 21 HOH HOH . 
E 3 HOH A 16 316 30 HOH HOH . 
E 3 HOH A 17 317 50 HOH HOH . 
E 3 HOH A 18 318 39 HOH HOH . 
E 3 HOH A 19 319 22 HOH HOH . 
E 3 HOH A 20 320 38 HOH HOH . 
E 3 HOH A 21 321 43 HOH HOH . 
E 3 HOH A 22 322 32 HOH HOH . 
E 3 HOH A 23 323 57 HOH HOH . 
E 3 HOH A 24 324 25 HOH HOH . 
E 3 HOH A 25 325 20 HOH HOH . 
E 3 HOH A 26 326 29 HOH HOH . 
E 3 HOH A 27 327 33 HOH HOH . 
E 3 HOH A 28 328 40 HOH HOH . 
E 3 HOH A 29 329 63 HOH HOH . 
F 3 HOH B 1 301 19 HOH HOH . 
F 3 HOH B 2 302 44 HOH HOH . 
F 3 HOH B 3 303 42 HOH HOH . 
F 3 HOH B 4 304 2 HOH HOH . 
F 3 HOH B 5 305 12 HOH HOH . 
F 3 HOH B 6 306 45 HOH HOH . 
F 3 HOH B 7 307 15 HOH HOH . 
F 3 HOH B 8 308 10 HOH HOH . 
F 3 HOH B 9 309 52 HOH HOH . 
F 3 HOH B 10 310 9 HOH HOH . 
F 3 HOH B 11 311 16 HOH HOH . 
F 3 HOH B 12 312 3 HOH HOH . 
F 3 HOH B 13 313 7 HOH HOH . 
F 3 HOH B 14 314 26 HOH HOH . 
F 3 HOH B 15 315 64 HOH HOH . 
F 3 HOH B 16 316 5 HOH HOH . 
F 3 HOH B 17 317 60 HOH HOH . 
F 3 HOH B 18 318 8 HOH HOH . 
F 3 HOH B 19 319 34 HOH HOH . 
F 3 HOH B 20 320 11 HOH HOH . 
F 3 HOH B 21 321 61 HOH HOH . 
F 3 HOH B 22 322 27 HOH HOH . 
F 3 HOH B 23 323 46 HOH HOH . 
F 3 HOH B 24 324 48 HOH HOH . 
F 3 HOH B 25 325 36 HOH HOH . 
F 3 HOH B 26 326 28 HOH HOH . 
F 3 HOH B 27 327 59 HOH HOH . 
F 3 HOH B 28 328 41 HOH HOH . 
F 3 HOH B 29 329 31 HOH HOH . 
F 3 HOH B 30 330 14 HOH HOH . 
F 3 HOH B 31 331 4 HOH HOH . 
F 3 HOH B 32 332 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . D 2 63.68 15.196 -10.327 1 102.56 ? N1 APR 201 B 1 
HETATM 2 C C2 APR . . . D 2 62.808 15.673 -9.436 1 101.17 ? C2 APR 201 B 1 
HETATM 3 N N3 APR . . . D 2 62.004 16.726 -9.518 1 100.86 ? N3 APR 201 B 1 
HETATM 4 C C4 APR . . . D 2 62.165 17.344 -10.688 1 102.14 ? C4 APR 201 B 1 
HETATM 5 C C5 APR . . . D 2 63.034 16.999 -11.696 1 100.54 ? C5 APR 201 B 1 
HETATM 6 C C6 APR . . . D 2 63.844 15.875 -11.489 1 96.15 ? C6 APR 201 B 1 
HETATM 7 N N6 APR . . . D 2 64.689 15.401 -12.4 1 85.43 ? N6 APR 201 B 1 
HETATM 8 N N7 APR . . . D 2 62.905 17.877 -12.761 1 99.28 ? N7 APR 201 B 1 
HETATM 9 C C8 APR . . . D 2 61.964 18.714 -12.396 1 100.07 ? C8 APR 201 B 1 
HETATM 10 N N9 APR . . . D 2 61.496 18.454 -11.119 1 102.88 ? N9 APR 201 B 1 
HETATM 11 C C1' APR . . . D 2 60.441 19.108 -10.409 1 104.91 ? C1' APR 201 B 1 
HETATM 12 C C2' APR . . . D 2 60.077 20.519 -10.836 1 102.86 ? C2' APR 201 B 1 
HETATM 13 O O2' APR . . . D 2 60.89 21.508 -10.258 1 98.2 ? O2' APR 201 B 1 
HETATM 14 C C3' APR . . . D 2 58.66 20.615 -10.281 1 104.19 ? C3' APR 201 B 1 
HETATM 15 O O3' APR . . . D 2 58.79 20.88 -8.896 1 103.08 ? O3' APR 201 B 1 
HETATM 16 O O4' APR . . . D 2 59.278 18.361 -10.671 1 104.29 ? O4' APR 201 B 1 
HETATM 17 C C4' APR . . . D 2 58.109 19.205 -10.522 1 104.87 ? C4' APR 201 B 1 
HETATM 18 C C5' APR . . . D 2 57.211 19.049 -11.728 1 106.6 ? C5' APR 201 B 1 
HETATM 19 O O5' APR . . . D 2 57.726 19.867 -12.796 1 106.51 ? O5' APR 201 B 1 
HETATM 20 P PA APR . . . D 2 57.578 19.334 -14.296 1 96.52 ? PA APR 201 B 1 
HETATM 21 O O1A APR . . . D 2 58.4 18.094 -14.464 1 100.81 -1 O1A APR 201 B 1 
HETATM 22 O O2A APR . . . D 2 57.775 20.497 -15.209 1 94.4 ? O2A APR 201 B 1 
HETATM 23 O O3A APR . . . D 2 56.044 18.886 -14.39 1 105.26 ? O3A APR 201 B 1 
HETATM 24 P PB APR . . . D 2 54.677 19.695 -14.624 1 102.06 ? PB APR 201 B 1 
HETATM 25 O O1B APR . . . D 2 53.535 18.762 -14.366 1 121.27 -1 O1B APR 201 B 1 
HETATM 26 O O2B APR . . . D 2 54.785 20.958 -13.836 1 107.58 ? O2B APR 201 B 1 
HETATM 27 O O5D APR . . . D 2 54.73 20.027 -16.199 1 86.93 ? O5D APR 201 B 1 
HETATM 28 C C5D APR . . . D 2 54.472 18.94 -17.144 1 78.11 ? C5D APR 201 B 1 
HETATM 29 O O4D APR . . . D 2 56.389 19.418 -18.472 1 83.03 ? O4D APR 201 B 1 
HETATM 30 O O1D APR . . . D 2 58.229 18.174 -19.043 1 66.64 ? O1D APR 201 B 1 
HETATM 31 C C1D APR . . . D 2 56.994 18.65 -19.482 1 75.07 ? C1D APR 201 B 1 
HETATM 32 O O2D APR . . . D 2 56.159 16.914 -21.003 1 76.12 ? O2D APR 201 B 1 
HETATM 33 C C2D APR . . . D 2 55.972 17.549 -19.761 1 72.65 ? C2D APR 201 B 1 
HETATM 34 O O3D APR . . . D 2 54.366 19.01 -20.875 1 53 ? O3D APR 201 B 1 
HETATM 35 C C3D APR . . . D 2 54.656 18.317 -19.67 1 71.14 ? C3D APR 201 B 1 
HETATM 36 C C4D APR . . . D 2 54.952 19.314 -18.535 1 80.12 ? C4D APR 201 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           372 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#