data_7CZE
#
_model_server_result.job_id            7qeEU0pMkV1h7WVEFoTW7Q 
_model_server_result.datetime_utc      '2024-11-24 19:12:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7cze 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":702}' 
#
_entry.id    7CZE 
#
_exptl.entry_id    7CZE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.03 
_cell.angle_beta          90.167 
_cell.angle_gamma         89.888 
_cell.entry_id            7CZE 
_cell.length_a            94.464 
_cell.length_b            113.806 
_cell.length_c            119.654 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7CZE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
PISA trimeric 3 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,M,N,O,P 1 1 
C,D,J,Q,R,S,T 2 1 
E,F,L,U,V,W,X 3 1 
G,H,K,Y,Z,AA,BA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 103 A CYS 120 1_555 A SG CYS 295 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 261 A CYS 278 1_555 A SG CYS 318 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 A SG CYS 437 A CYS 454 1_555 A SG CYS 461 A CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf4 A SG CYS 517 A CYS 534 1_555 A SG CYS 570 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 A SG CYS 595 A CYS 612 1_555 A SG CYS 598 A CYS 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 B SG CYS 5 B CYS 28 1_555 B SG CYS 33 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf7 B SG CYS 6 B CYS 29 1_555 B SG CYS 56 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 C SG CYS 103 C CYS 120 1_555 C SG CYS 295 C CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 C SG CYS 261 C CYS 278 1_555 C SG CYS 318 C CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf10 C SG CYS 437 C CYS 454 1_555 C SG CYS 461 C CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf11 C SG CYS 517 C CYS 534 1_555 C SG CYS 570 C CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf12 C SG CYS 595 C CYS 612 1_555 C SG CYS 598 C CYS 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf13 D SG CYS 5 D CYS 28 1_555 D SG CYS 33 D CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf14 D SG CYS 6 D CYS 29 1_555 D SG CYS 56 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf15 E SG CYS 103 E CYS 120 1_555 E SG CYS 295 E CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf16 E SG CYS 261 E CYS 278 1_555 E SG CYS 318 E CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf17 E SG CYS 437 E CYS 454 1_555 E SG CYS 461 E CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf18 E SG CYS 517 E CYS 534 1_555 E SG CYS 570 E CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf19 E SG CYS 595 E CYS 612 1_555 E SG CYS 598 E CYS 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf20 F SG CYS 5 F CYS 28 1_555 F SG CYS 33 F CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf21 F SG CYS 6 F CYS 29 1_555 F SG CYS 56 F CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf22 G SG CYS 103 G CYS 120 1_555 G SG CYS 295 G CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf23 G SG CYS 261 G CYS 278 1_555 G SG CYS 318 G CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf24 G SG CYS 437 G CYS 454 1_555 G SG CYS 461 G CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf25 G SG CYS 517 G CYS 534 1_555 G SG CYS 570 G CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf26 G SG CYS 595 G CYS 612 1_555 G SG CYS 598 G CYS 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf27 H SG CYS 5 H CYS 28 1_555 H SG CYS 33 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf28 H SG CYS 6 H CYS 29 1_555 H SG CYS 56 H CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf29 I SG CYS 45 I CYS 70 1_555 I SG CYS 163 I CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf30 I SG CYS 80 I CYS 105 1_555 I SG CYS 90 I CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf31 J SG CYS 45 J CYS 70 1_555 J SG CYS 163 J CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf32 J SG CYS 80 J CYS 105 1_555 J SG CYS 90 J CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf33 K SG CYS 45 K CYS 70 1_555 K SG CYS 163 K CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf34 K SG CYS 80 K CYS 105 1_555 K SG CYS 90 K CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf35 L SG CYS 45 L CYS 70 1_555 L SG CYS 163 L CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf36 L SG CYS 80 L CYS 105 1_555 L SG CYS 90 L CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 43 A ASN 60 1_555 M C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 A ND2 ASN 532 A ASN 549 1_555 N C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 B ND2 ASN 30 B ASN 53 1_555 O C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale4 B ND2 ASN 46 B ASN 69 1_555 P C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale5 C ND2 ASN 43 C ASN 60 1_555 Q C1 NAG . C NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 C ND2 ASN 532 C ASN 549 1_555 R C1 NAG . C NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale7 D ND2 ASN 30 D ASN 53 1_555 S C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 D ND2 ASN 46 D ASN 69 1_555 T C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale9 E ND2 ASN 43 E ASN 60 1_555 U C1 NAG . E NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale10 E ND2 ASN 532 E ASN 549 1_555 V C1 NAG . E NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale11 F ND2 ASN 30 F ASN 53 1_555 W C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale12 F ND2 ASN 46 F ASN 69 1_555 X C1 NAG . F NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale13 G ND2 ASN 43 G ASN 60 1_555 Y C1 NAG . G NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale14 G ND2 ASN 532 G ASN 549 1_555 Z C1 NAG . G NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale15 H ND2 ASN 30 H ASN 53 1_555 AA C1 NAG . H NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale16 H ND2 ASN 46 H ASN 69 1_555 BA C1 NAG . H NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7CZE 
_atom_sites.fract_transf_matrix[1][1]    0.010586 
_atom_sites.fract_transf_matrix[1][2]    -0.000021 
_atom_sites.fract_transf_matrix[1][3]    0.000031 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008787 
_atom_sites.fract_transf_matrix[2][3]    0.000005 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 NAG A 1 701 701 NAG NAG . 
N 4 NAG A 1 702 801 NAG NAG . 
O 4 NAG B 1 201 201 NAG NAG . 
P 4 NAG B 1 202 301 NAG NAG . 
Q 4 NAG C 1 701 701 NAG NAG . 
R 4 NAG C 1 702 801 NAG NAG . 
S 4 NAG D 1 201 201 NAG NAG . 
T 4 NAG D 1 202 301 NAG NAG . 
U 4 NAG E 1 701 701 NAG NAG . 
V 4 NAG E 1 702 801 NAG NAG . 
W 4 NAG F 1 201 201 NAG NAG . 
X 4 NAG F 1 202 301 NAG NAG . 
Y 4 NAG G 1 701 701 NAG NAG . 
Z 4 NAG G 1 702 801 NAG NAG . 
AA 4 NAG H 1 201 201 NAG NAG . 
BA 4 NAG H 1 202 301 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . V 4 29.488 119.639 -2.96 1 200.91 ? C1 NAG 702 E 1 
HETATM 2 C C2 NAG . . . V 4 30.979 119.287 -2.885 1 201.33 ? C2 NAG 702 E 1 
HETATM 3 C C3 NAG . . . V 4 31.815 120.566 -2.924 1 204.24 ? C3 NAG 702 E 1 
HETATM 4 C C4 NAG . . . V 4 31.489 121.382 -4.167 1 206.05 ? C4 NAG 702 E 1 
HETATM 5 C C5 NAG . . . V 4 29.988 121.667 -4.248 1 205.51 ? C5 NAG 702 E 1 
HETATM 6 C C6 NAG . . . V 4 29.583 122.317 -5.557 1 207.15 ? C6 NAG 702 E 1 
HETATM 7 C C7 NAG . . . V 4 31.782 117.262 -1.751 1 198.2 ? C7 NAG 702 E 1 
HETATM 8 C C8 NAG . . . V 4 32.122 116.633 -0.43 1 196.97 ? C8 NAG 702 E 1 
HETATM 9 N N2 NAG . . . V 4 31.308 118.513 -1.698 1 199.76 ? N2 NAG 702 E 1 
HETATM 10 O O3 NAG . . . V 4 33.202 120.246 -2.898 1 204.91 ? O3 NAG 702 E 1 
HETATM 11 O O4 NAG . . . V 4 32.202 122.614 -4.13 1 208.96 ? O4 NAG 702 E 1 
HETATM 12 O O5 NAG . . . V 4 29.24 120.444 -4.144 1 202.75 ? O5 NAG 702 E 1 
HETATM 13 O O6 NAG . . . V 4 28.553 121.6 -6.226 1 205.55 ? O6 NAG 702 E 1 
HETATM 14 O O7 NAG . . . V 4 31.921 116.659 -2.821 1 197.91 ? O7 NAG 702 E 1 
#
_model_server_stats.io_time_ms              297 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#