data_7CZF # _model_server_result.job_id XvWXXjsQv8suC3ebFLK_Tw _model_server_result.datetime_utc '2025-04-09 13:35:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7czf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":704}' # _entry.id 7CZF # _exptl.entry_id 7CZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7CZF _cell.length_a 80.803 _cell.length_b 153.196 _cell.length_c 275.228 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7CZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q,R 1 1 D,E,F,G,H,I,S,T,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N ? 7 U N N ? 7 V N N ? 7 W N N ? 7 X N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 3 2 MAN NAG C1 O1 . O4 HO4 . sing 4 ? 5 4 3 MAN MAN C1 O1 . O4 HO4 . sing 5 ? 5 5 1 FUC NAG C1 O1 . O3 HO3 . sing 6 ? 5 6 1 FUC NAG C1 O1 . O6 HO6 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 6 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 L 1 NAG E 1001 NAG 4 n G NAG 2 L 2 NAG E 1002 NAG 5 n H NAG 1 S 1 NAG E 1011 NAG 5 n H NAG 2 S 2 NAG E 1012 NAG 5 n H MAN 3 S 3 MAN E 1015 MAN 5 n H MAN 4 S 4 MAN E 1016 MAN 5 n H FUC 5 S 5 FUC E 1014 FUC 5 n H FUC 6 S 6 FUC E 1013 FUC 4 n I NAG 1 a 1 NAG E 1041 NAG 4 n I NAG 2 a 2 NAG E 1042 NAG 6 n J NAG 1 H 1 NAG B 1011 NAG 6 n J NAG 2 H 2 NAG B 1012 NAG 6 n J FUC 3 H 3 FUC B 1013 FUC 4 n K NAG 1 K 1 NAG B 1021 NAG 4 n K NAG 2 K 2 NAG B 1022 NAG 4 n L NAG 1 N 1 NAG B 1041 NAG 4 n L NAG 2 N 2 NAG B 1042 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 70 1_555 A SG CYS 161 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 78 A CYS 105 1_555 A SG CYS 88 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 94 B CYS 115 1_555 B SG CYS 316 B CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 279 B CYS 300 1_555 B SG CYS 334 B CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 454 B CYS 475 1_555 B SG CYS 481 B CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 536 B CYS 557 1_555 B SG CYS 588 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 613 B CYS 634 1_555 B SG CYS 616 B CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 C SG CYS 10 C CYS 26 1_555 C SG CYS 38 C CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 11 C CYS 27 1_555 C SG CYS 58 C CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 D SG CYS 43 D CYS 70 1_555 D SG CYS 161 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 D SG CYS 78 D CYS 105 1_555 D SG CYS 88 D CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 E SG CYS 94 E CYS 115 1_555 E SG CYS 316 E CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 E SG CYS 279 E CYS 300 1_555 E SG CYS 334 E CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 E SG CYS 454 E CYS 475 1_555 E SG CYS 481 E CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 E SG CYS 536 E CYS 557 1_555 E SG CYS 588 E CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 E SG CYS 613 E CYS 634 1_555 E SG CYS 616 E CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 F SG CYS 10 F CYS 26 1_555 F SG CYS 38 F CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 F SG CYS 11 F CYS 27 1_555 F SG CYS 58 F CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 25 B ASN 46 1_555 M C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 33 B ASN 54 1_555 J C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 B ND2 ASN 104 B ASN 125 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 B ND2 ASN 188 B ASN 209 1_555 N C1 NAG . B NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 246 B ASN 267 1_555 L C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 B ND2 ASN 253 B ASN 274 1_555 O C1 NAG . B NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 B ND2 ASN 344 B ASN 365 1_555 P C1 NAG . B NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 B ND2 ASN 667 B ASN 688 1_555 Q C1 NAG . B NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 C ND2 ASN 102 C ASN 118 1_555 R C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale10 E ND2 ASN 25 E ASN 46 1_555 G C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 E ND2 ASN 33 E ASN 54 1_555 H C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 E ND2 ASN 104 E ASN 125 1_555 S C1 NAG . E NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 E ND2 ASN 188 E ASN 209 1_555 T C1 NAG . E NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 E ND2 ASN 246 E ASN 267 1_555 I C1 NAG . a NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 E ND2 ASN 253 E ASN 274 1_555 U C1 NAG . E NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale16 E ND2 ASN 344 E ASN 365 1_555 V C1 NAG . E NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 E ND2 ASN 667 E ASN 688 1_555 W C1 NAG . E NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale18 F ND2 ASN 102 F ASN 118 1_555 X C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale19 G O4 NAG . L NAG 1 1_555 G C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale20 H O4 NAG . S NAG 1 1_555 H C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale21 H O3 NAG . S NAG 1 1_555 H C1 FUC . S FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale22 H O6 NAG . S NAG 1 1_555 H C1 FUC . S FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale23 H O4 NAG . S NAG 2 1_555 H C1 MAN . S MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale24 H O4 MAN . S MAN 3 1_555 H C1 MAN . S MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale25 I O4 NAG . a NAG 1 1_555 I C1 NAG . a NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale26 J O4 NAG . H NAG 1 1_555 J C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale27 J O6 NAG . H NAG 1 1_555 J C1 FUC . H FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale28 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale29 L O4 NAG . N NAG 1 1_555 L C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 282 n n C1 O1 NAG sing 283 n n C1 O5 NAG sing 284 n n C1 H1 NAG sing 285 n n C2 C3 NAG sing 286 n n C2 N2 NAG sing 287 n n C2 H2 NAG sing 288 n n C3 C4 NAG sing 289 n n C3 O3 NAG sing 290 n n C3 H3 NAG sing 291 n n C4 C5 NAG sing 292 n n C4 O4 NAG sing 293 n n C4 H4 NAG sing 294 n n C5 C6 NAG sing 295 n n C5 O5 NAG sing 296 n n C5 H5 NAG sing 297 n n C6 O6 NAG sing 298 n n C6 H61 NAG sing 299 n n C6 H62 NAG sing 300 n n C7 C8 NAG sing 301 n n C7 N2 NAG sing 302 n n C7 O7 NAG doub 303 n n C8 H81 NAG sing 304 n n C8 H82 NAG sing 305 n n C8 H83 NAG sing 306 n n N2 HN2 NAG sing 307 n n O1 HO1 NAG sing 308 n n O3 HO3 NAG sing 309 n n O4 HO4 NAG sing 310 n n O6 HO6 NAG sing 311 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7CZF _atom_sites.fract_transf_matrix[1][1] 0.012376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 7 NAG B 1 701 1001 NAG NAG . N 7 NAG B 1 702 1031 NAG NAG . O 7 NAG B 1 703 1051 NAG NAG . P 7 NAG B 1 704 1061 NAG NAG . Q 7 NAG B 1 705 1071 NAG NAG . R 7 NAG C 1 201 201 NAG NAG . S 7 NAG E 1 701 1021 NAG NAG . T 7 NAG E 1 702 1031 NAG NAG . U 7 NAG E 1 703 1051 NAG NAG . V 7 NAG E 1 704 1061 NAG NAG . W 7 NAG E 1 705 1071 NAG NAG . X 7 NAG F 1 201 201 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 7 -11.136 3.595 163.447 1 108.22 ? C1 NAG 704 E 1 HETATM 2 C C2 NAG . . . V 7 -11.827 2.713 164.487 1 101.11 ? C2 NAG 704 E 1 HETATM 3 C C3 NAG . . . V 7 -10.802 2.151 165.469 1 102.44 ? C3 NAG 704 E 1 HETATM 4 C C4 NAG . . . V 7 -9.675 1.45 164.723 1 118.89 ? C4 NAG 704 E 1 HETATM 5 C C5 NAG . . . V 7 -9.074 2.386 163.677 1 115.73 ? C5 NAG 704 E 1 HETATM 6 C C6 NAG . . . V 7 -8.026 1.718 162.818 1 106.09 ? C6 NAG 704 E 1 HETATM 7 C C7 NAG . . . V 7 -14.166 3.286 164.963 1 108.22 ? C7 NAG 704 E 1 HETATM 8 C C8 NAG . . . V 7 -15.091 4.133 165.785 1 95.97 ? C8 NAG 704 E 1 HETATM 9 N N2 NAG . . . V 7 -12.86 3.452 165.194 1 103.48 ? N2 NAG 704 E 1 HETATM 10 O O3 NAG . . . V 7 -11.444 1.236 166.351 1 96.99 ? O3 NAG 704 E 1 HETATM 11 O O4 NAG . . . V 7 -8.659 1.054 165.636 1 123.81 ? O4 NAG 704 E 1 HETATM 12 O O5 NAG . . . V 7 -10.103 2.849 162.791 1 109.51 ? O5 NAG 704 E 1 HETATM 13 O O6 NAG . . . V 7 -6.797 1.575 163.518 1 106.48 ? O6 NAG 704 E 1 HETATM 14 O O7 NAG . . . V 7 -14.583 2.488 164.13 1 105.23 ? O7 NAG 704 E 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #