data_7D09 # _model_server_result.job_id 3XSA9rOlhOoSGAenCdSB3A _model_server_result.datetime_utc '2024-10-20 00:29:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":301}' # _entry.id 7D09 # _exptl.entry_id 7D09 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D09 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7D09 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 ATP B 1 301 301 ATP ATP . N 5 ATP E 1 301 301 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . M 5 103.007 100.526 65.039 1 76.56 ? PG ATP 301 B 1 HETATM 2 O O1G ATP . . . M 5 102.77 101.848 64.361 1 76.56 ? O1G ATP 301 B 1 HETATM 3 O O2G ATP . . . M 5 103.927 100.591 66.23 1 76.56 ? O2G ATP 301 B 1 HETATM 4 O O3G ATP . . . M 5 103.323 99.392 64.101 1 76.56 ? O3G ATP 301 B 1 HETATM 5 P PB ATP . . . M 5 100.226 100.265 64.779 1 76.56 ? PB ATP 301 B 1 HETATM 6 O O1B ATP . . . M 5 99.598 101.626 64.93 1 76.56 ? O1B ATP 301 B 1 HETATM 7 O O2B ATP . . . M 5 100.547 99.781 63.398 1 76.56 ? O2B ATP 301 B 1 HETATM 8 O O3B ATP . . . M 5 101.566 100.17 65.659 1 76.56 ? O3B ATP 301 B 1 HETATM 9 P PA ATP . . . M 5 98.878 99.26 67.019 1 76.56 ? PA ATP 301 B 1 HETATM 10 O O1A ATP . . . M 5 99.245 100.615 67.55 1 76.56 ? O1A ATP 301 B 1 HETATM 11 O O2A ATP . . . M 5 99.345 98.048 67.77 1 76.56 ? O2A ATP 301 B 1 HETATM 12 O O3A ATP . . . M 5 99.313 99.152 65.482 1 76.56 ? O3A ATP 301 B 1 HETATM 13 O O5' ATP . . . M 5 97.289 99.155 66.926 1 76.56 ? O5' ATP 301 B 1 HETATM 14 C C5' ATP . . . M 5 96.63 98.384 67.915 1 76.56 ? C5' ATP 301 B 1 HETATM 15 C C4' ATP . . . M 5 95.483 99.171 68.529 1 76.56 ? C4' ATP 301 B 1 HETATM 16 O O4' ATP . . . M 5 95.26 98.666 69.84 1 76.56 ? O4' ATP 301 B 1 HETATM 17 C C3' ATP . . . M 5 95.816 100.644 68.639 1 76.56 ? C3' ATP 301 B 1 HETATM 18 O O3' ATP . . . M 5 94.745 101.394 68.07 1 76.56 ? O3' ATP 301 B 1 HETATM 19 C C2' ATP . . . M 5 95.906 100.938 70.114 1 76.56 ? C2' ATP 301 B 1 HETATM 20 O O2' ATP . . . M 5 95.117 102.092 70.408 1 76.56 ? O2' ATP 301 B 1 HETATM 21 C C1' ATP . . . M 5 95.358 99.715 70.806 1 76.56 ? C1' ATP 301 B 1 HETATM 22 N N9 ATP . . . M 5 96.308 99.306 71.872 1 76.56 ? N9 ATP 301 B 1 HETATM 23 C C8 ATP . . . M 5 97.621 99.105 71.7 1 76.56 ? C8 ATP 301 B 1 HETATM 24 N N7 ATP . . . M 5 98.219 98.743 72.86 1 76.56 ? N7 ATP 301 B 1 HETATM 25 C C5 ATP . . . M 5 97.274 98.728 73.797 1 76.56 ? C5 ATP 301 B 1 HETATM 26 C C6 ATP . . . M 5 97.221 98.417 75.243 1 76.56 ? C6 ATP 301 B 1 HETATM 27 N N6 ATP . . . M 5 98.358 98.073 75.894 1 76.56 ? N6 ATP 301 B 1 HETATM 28 N N1 ATP . . . M 5 96.033 98.504 75.863 1 76.56 ? N1 ATP 301 B 1 HETATM 29 C C2 ATP . . . M 5 94.914 98.861 75.202 1 76.56 ? C2 ATP 301 B 1 HETATM 30 N N3 ATP . . . M 5 94.884 99.141 73.893 1 76.56 ? N3 ATP 301 B 1 HETATM 31 C C4 ATP . . . M 5 96.01 99.093 73.146 1 76.56 ? C4 ATP 301 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #