data_7D0O # _model_server_result.job_id dUyI37OtQByM8iQYKqKOpQ _model_server_result.datetime_utc '2024-11-08 02:56:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d0o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 7D0O # _exptl.entry_id 7D0O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.6 _cell.angle_gamma 90 _cell.entry_id 7D0O _cell.length_a 127.604 _cell.length_b 38.372 _cell.length_c 88.075 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D0O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 96 A HIS 431 1_555 A N ALY 97 A ALY 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ALY 97 A ALY 432 1_555 A N THR 98 A THR 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A SG CYS 33 A CYS 368 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A SG CYS 36 A CYS 371 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc3 A NE2 HIS 49 A HIS 384 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc4 A SG CYS 53 A CYS 388 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 111 n n C1 C2 EDO sing 112 n n C1 H11 EDO sing 113 n n C1 H12 EDO sing 114 n n O1 HO1 EDO sing 115 n n C2 O2 EDO sing 116 n n C2 H21 EDO sing 117 n n C2 H22 EDO sing 118 n n O2 HO2 EDO sing 119 n n # _atom_sites.entry_id 7D0O _atom_sites.fract_transf_matrix[1][1] 0.007837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005011 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 1 ZN ZN . D 4 EDO A 1 702 1 EDO EDO . E 5 HOH A 1 801 39 HOH HOH . E 5 HOH A 2 802 5 HOH HOH . E 5 HOH A 3 803 2 HOH HOH . E 5 HOH A 4 804 15 HOH HOH . E 5 HOH A 5 805 36 HOH HOH . E 5 HOH A 6 806 46 HOH HOH . E 5 HOH A 7 807 1 HOH HOH . E 5 HOH A 8 808 21 HOH HOH . E 5 HOH A 9 809 3 HOH HOH . E 5 HOH A 10 810 19 HOH HOH . E 5 HOH A 11 811 38 HOH HOH . E 5 HOH A 12 812 12 HOH HOH . E 5 HOH A 13 813 17 HOH HOH . E 5 HOH A 14 814 14 HOH HOH . E 5 HOH A 15 815 41 HOH HOH . E 5 HOH A 16 816 16 HOH HOH . E 5 HOH A 17 817 45 HOH HOH . E 5 HOH A 18 818 8 HOH HOH . E 5 HOH A 19 819 43 HOH HOH . E 5 HOH A 20 820 13 HOH HOH . E 5 HOH A 21 821 9 HOH HOH . E 5 HOH A 22 822 23 HOH HOH . E 5 HOH A 23 823 26 HOH HOH . E 5 HOH A 24 824 11 HOH HOH . E 5 HOH A 25 825 42 HOH HOH . E 5 HOH A 26 826 22 HOH HOH . E 5 HOH A 27 827 28 HOH HOH . E 5 HOH A 28 828 18 HOH HOH . E 5 HOH A 29 829 48 HOH HOH . E 5 HOH A 30 830 30 HOH HOH . E 5 HOH A 31 831 10 HOH HOH . E 5 HOH A 32 832 37 HOH HOH . E 5 HOH A 33 833 34 HOH HOH . F 5 HOH B 1 101 40 HOH HOH . F 5 HOH B 2 102 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 197.417 2.569 91.078 1 25.39 ? C1 EDO 702 A 1 HETATM 2 O O1 EDO . . . D 4 197.783 1.262 90.621 1 22.73 ? O1 EDO 702 A 1 HETATM 3 C C2 EDO . . . D 4 198.636 3.285 91.653 1 28.41 ? C2 EDO 702 A 1 HETATM 4 O O2 EDO . . . D 4 199.796 3.125 90.817 1 29.45 ? O2 EDO 702 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #