data_7D0P # _model_server_result.job_id m9jYqCg5BCsqDCVlYmbLdA _model_server_result.datetime_utc '2024-11-16 17:36:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7D0P # _exptl.entry_id 7D0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 823.597 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'propionyl Coenzyme A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.01 _cell.angle_gamma 90 _cell.entry_id 7D0P _cell.length_a 126.679 _cell.length_b 39.306 _cell.length_c 87.744 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 96 A HIS 431 1_555 A N ALY 97 A ALY 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C ALY 97 A ALY 432 1_555 A N THR 98 A THR 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 33 A CYS 368 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A SG CYS 36 A CYS 371 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A NE2 HIS 49 A HIS 384 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 A SG CYS 53 A CYS 388 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? # _chem_comp.formula 'C24 H40 N7 O17 P3 S' _chem_comp.formula_weight 823.597 _chem_comp.id 1VU _chem_comp.mon_nstd_flag . _chem_comp.name 'propionyl Coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 P 1VU doub 1 n n C C1 1VU sing 2 n n O9 P1 1VU doub 3 n n C13 O4 1VU sing 4 n n C13 C10 1VU sing 5 n n C12 C10 1VU sing 6 n n P O4 1VU sing 7 n n P O6 1VU sing 8 n n P O7 1VU sing 9 n n C11 C10 1VU sing 10 n n C1 C2 1VU sing 11 n n C10 C9 1VU sing 12 n n O7 P1 1VU sing 13 n n P1 O8 1VU sing 14 n n P1 O10 1VU sing 15 n n C2 S 1VU sing 16 n n C2 O 1VU doub 17 n n S C3 1VU sing 18 n n C9 O3 1VU sing 19 n n C9 C8 1VU sing 20 n n O10 C14 1VU sing 21 n n O2 C8 1VU doub 22 n n C8 N1 1VU sing 23 n n N C4 1VU sing 24 n n N C5 1VU sing 25 n n C14 C15 1VU sing 26 n n C6 C5 1VU sing 27 n n C6 C7 1VU sing 28 n n N1 C7 1VU sing 29 n n C4 C3 1VU sing 30 n n C5 O1 1VU doub 31 n n C23 C22 1VU sing 32 n n C23 C15 1VU sing 33 n n C23 O13 1VU sing 34 n n C17 N3 1VU doub 35 n y C17 N2 1VU sing 36 n y C22 O12 1VU sing 37 n n C22 C16 1VU sing 38 n n C15 O11 1VU sing 39 n n N3 C18 1VU sing 40 n y O14 P2 1VU doub 41 n n O15 P2 1VU sing 42 n n O11 C16 1VU sing 43 n n O13 P2 1VU sing 44 n n N2 C16 1VU sing 45 n n N2 C21 1VU sing 46 n y P2 O16 1VU sing 47 n n C18 C21 1VU doub 48 n y C18 C19 1VU sing 49 n y C21 N6 1VU sing 50 n y N4 C19 1VU sing 51 n n C19 N5 1VU doub 52 n y N6 C20 1VU doub 53 n y N5 C20 1VU sing 54 n y O15 H1 1VU sing 55 n n O16 H2 1VU sing 56 n n C23 H3 1VU sing 57 n n C22 H4 1VU sing 58 n n O12 H5 1VU sing 59 n n C16 H6 1VU sing 60 n n C20 H7 1VU sing 61 n n N4 H8 1VU sing 62 n n N4 H9 1VU sing 63 n n C17 H10 1VU sing 64 n n C15 H11 1VU sing 65 n n C14 H12 1VU sing 66 n n C14 H13 1VU sing 67 n n O8 H14 1VU sing 68 n n O6 H15 1VU sing 69 n n C13 H16 1VU sing 70 n n C13 H17 1VU sing 71 n n C11 H18 1VU sing 72 n n C11 H19 1VU sing 73 n n C11 H20 1VU sing 74 n n C12 H21 1VU sing 75 n n C12 H22 1VU sing 76 n n C12 H23 1VU sing 77 n n C9 H24 1VU sing 78 n n O3 H25 1VU sing 79 n n N1 H26 1VU sing 80 n n C7 H27 1VU sing 81 n n C7 H28 1VU sing 82 n n C6 H29 1VU sing 83 n n C6 H30 1VU sing 84 n n N H31 1VU sing 85 n n C4 H32 1VU sing 86 n n C4 H33 1VU sing 87 n n C3 H34 1VU sing 88 n n C3 H35 1VU sing 89 n n C1 H36 1VU sing 90 n n C1 H37 1VU sing 91 n n C H38 1VU sing 92 n n C H39 1VU sing 93 n n C H40 1VU sing 94 n n # _atom_sites.entry_id 7D0P _atom_sites.fract_transf_matrix[1][1] 0.007894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005129 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1VU A 1 701 1 1VU 1VU . D 4 ZN A 1 702 1 ZN ZN . E 5 CL B 1 101 1 CL CL . F 6 HOH A 1 801 86 HOH HOH . F 6 HOH A 2 802 54 HOH HOH . F 6 HOH A 3 803 83 HOH HOH . F 6 HOH A 4 804 100 HOH HOH . F 6 HOH A 5 805 20 HOH HOH . F 6 HOH A 6 806 10 HOH HOH . F 6 HOH A 7 807 69 HOH HOH . F 6 HOH A 8 808 8 HOH HOH . F 6 HOH A 9 809 53 HOH HOH . F 6 HOH A 10 810 13 HOH HOH . F 6 HOH A 11 811 5 HOH HOH . F 6 HOH A 12 812 50 HOH HOH . F 6 HOH A 13 813 56 HOH HOH . F 6 HOH A 14 814 63 HOH HOH . F 6 HOH A 15 815 97 HOH HOH . F 6 HOH A 16 816 3 HOH HOH . F 6 HOH A 17 817 75 HOH HOH . F 6 HOH A 18 818 14 HOH HOH . F 6 HOH A 19 819 11 HOH HOH . F 6 HOH A 20 820 67 HOH HOH . F 6 HOH A 21 821 6 HOH HOH . F 6 HOH A 22 822 37 HOH HOH . F 6 HOH A 23 823 2 HOH HOH . F 6 HOH A 24 824 7 HOH HOH . F 6 HOH A 25 825 77 HOH HOH . F 6 HOH A 26 826 107 HOH HOH . F 6 HOH A 27 827 43 HOH HOH . F 6 HOH A 28 828 15 HOH HOH . F 6 HOH A 29 829 85 HOH HOH . F 6 HOH A 30 830 80 HOH HOH . F 6 HOH A 31 831 1 HOH HOH . F 6 HOH A 32 832 55 HOH HOH . F 6 HOH A 33 833 66 HOH HOH . F 6 HOH A 34 834 16 HOH HOH . F 6 HOH A 35 835 91 HOH HOH . F 6 HOH A 36 836 38 HOH HOH . F 6 HOH A 37 837 40 HOH HOH . F 6 HOH A 38 838 19 HOH HOH . F 6 HOH A 39 839 76 HOH HOH . F 6 HOH A 40 840 68 HOH HOH . F 6 HOH A 41 841 51 HOH HOH . F 6 HOH A 42 842 30 HOH HOH . F 6 HOH A 43 843 22 HOH HOH . F 6 HOH A 44 844 39 HOH HOH . F 6 HOH A 45 845 4 HOH HOH . F 6 HOH A 46 846 44 HOH HOH . F 6 HOH A 47 847 61 HOH HOH . F 6 HOH A 48 848 41 HOH HOH . F 6 HOH A 49 849 33 HOH HOH . F 6 HOH A 50 850 104 HOH HOH . F 6 HOH A 51 851 84 HOH HOH . F 6 HOH A 52 852 36 HOH HOH . F 6 HOH A 53 853 74 HOH HOH . F 6 HOH A 54 854 95 HOH HOH . F 6 HOH A 55 855 17 HOH HOH . F 6 HOH A 56 856 114 HOH HOH . F 6 HOH A 57 857 79 HOH HOH . F 6 HOH A 58 858 103 HOH HOH . F 6 HOH A 59 859 34 HOH HOH . F 6 HOH A 60 860 46 HOH HOH . F 6 HOH A 61 861 58 HOH HOH . F 6 HOH A 62 862 111 HOH HOH . F 6 HOH A 63 863 18 HOH HOH . F 6 HOH A 64 864 47 HOH HOH . F 6 HOH A 65 865 62 HOH HOH . F 6 HOH A 66 866 48 HOH HOH . F 6 HOH A 67 867 31 HOH HOH . F 6 HOH A 68 868 106 HOH HOH . F 6 HOH A 69 869 27 HOH HOH . F 6 HOH A 70 870 26 HOH HOH . F 6 HOH A 71 871 64 HOH HOH . F 6 HOH A 72 872 60 HOH HOH . F 6 HOH A 73 873 32 HOH HOH . F 6 HOH A 74 874 28 HOH HOH . F 6 HOH A 75 875 82 HOH HOH . F 6 HOH A 76 876 35 HOH HOH . F 6 HOH A 77 877 108 HOH HOH . F 6 HOH A 78 878 23 HOH HOH . F 6 HOH A 79 879 42 HOH HOH . F 6 HOH A 80 880 94 HOH HOH . F 6 HOH A 81 881 9 HOH HOH . F 6 HOH A 82 882 52 HOH HOH . F 6 HOH A 83 883 25 HOH HOH . F 6 HOH A 84 884 105 HOH HOH . F 6 HOH A 85 885 90 HOH HOH . F 6 HOH A 86 886 89 HOH HOH . F 6 HOH A 87 887 12 HOH HOH . F 6 HOH A 88 888 81 HOH HOH . F 6 HOH A 89 889 87 HOH HOH . F 6 HOH A 90 890 109 HOH HOH . F 6 HOH A 91 891 78 HOH HOH . F 6 HOH A 92 892 113 HOH HOH . F 6 HOH A 93 893 24 HOH HOH . F 6 HOH A 94 894 110 HOH HOH . F 6 HOH A 95 895 92 HOH HOH . F 6 HOH A 96 896 102 HOH HOH . G 6 HOH B 1 201 29 HOH HOH . G 6 HOH B 2 202 45 HOH HOH . G 6 HOH B 3 203 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O14 1VU . . . C 3 188.167 3.663 92.977 1 46.87 ? O14 1VU 701 A 1 HETATM 2 P P2 1VU . . . C 3 189.394 3.444 92.126 1 48.29 ? P2 1VU 701 A 1 HETATM 3 O O15 1VU . . . C 3 189.896 4.74 91.554 1 54.93 -1 O15 1VU 701 A 1 HETATM 4 O O16 1VU . . . C 3 189.091 2.528 90.971 1 48.55 -1 O16 1VU 701 A 1 HETATM 5 O O13 1VU . . . C 3 190.531 2.808 93.13 1 49.88 ? O13 1VU 701 A 1 HETATM 6 C C23 1VU . . . C 3 191.784 2.545 92.636 1 41.29 ? C23 1VU 701 A 1 HETATM 7 C C22 1VU . . . C 3 192.791 3.593 93.076 1 40.63 ? C22 1VU 701 A 1 HETATM 8 O O12 1VU . . . C 3 192.212 4.954 92.965 1 42.51 ? O12 1VU 701 A 1 HETATM 9 C C16 1VU . . . C 3 193.037 3.234 94.368 1 41.65 ? C16 1VU 701 A 1 HETATM 10 N N2 1VU . . . C 3 194.306 3.608 94.872 1 43.6 ? N2 1VU 701 A 1 HETATM 11 C C21 1VU . . . C 3 194.518 4.554 95.785 1 46.39 ? C21 1VU 701 A 1 HETATM 12 N N6 1VU . . . C 3 193.68 5.394 96.436 1 48.6 ? N6 1VU 701 A 1 HETATM 13 C C20 1VU . . . C 3 194.195 6.293 97.334 1 57.03 ? C20 1VU 701 A 1 HETATM 14 N N5 1VU . . . C 3 195.537 6.345 97.582 1 51.19 ? N5 1VU 701 A 1 HETATM 15 C C19 1VU . . . C 3 196.355 5.509 96.923 1 49.54 ? C19 1VU 701 A 1 HETATM 16 N N4 1VU . . . C 3 197.751 5.765 97.354 1 49.81 ? N4 1VU 701 A 1 HETATM 17 C C18 1VU . . . C 3 195.839 4.597 96.022 1 46.89 ? C18 1VU 701 A 1 HETATM 18 N N3 1VU . . . C 3 196.447 3.676 95.264 1 42.85 ? N3 1VU 701 A 1 HETATM 19 C C17 1VU . . . C 3 195.492 3.054 94.557 1 46.63 ? C17 1VU 701 A 1 HETATM 20 O O11 1VU . . . C 3 193.026 1.643 94.368 1 35.96 ? O11 1VU 701 A 1 HETATM 21 C C15 1VU . . . C 3 192.291 1.237 93.354 1 40.49 ? C15 1VU 701 A 1 HETATM 22 C C14 1VU . . . C 3 193.181 0.392 92.45 1 37.73 ? C14 1VU 701 A 1 HETATM 23 O O10 1VU . . . C 3 194.032 1.255 91.715 1 36.02 ? O10 1VU 701 A 1 HETATM 24 P P1 1VU . . . C 3 195.119 0.527 90.707 1 33.9 ? P1 1VU 701 A 1 HETATM 25 O O8 1VU . . . C 3 194.478 -0.559 89.89 1 34.93 -1 O8 1VU 701 A 1 HETATM 26 O O9 1VU . . . C 3 195.806 1.62 89.92 1 34.17 ? O9 1VU 701 A 1 HETATM 27 O O7 1VU . . . C 3 196.117 -0.205 91.757 1 34.31 ? O7 1VU 701 A 1 HETATM 28 P P 1VU . . . C 3 197.762 -0.064 91.869 1 32.18 ? P 1VU 701 A 1 HETATM 29 O O5 1VU . . . C 3 198.355 -0.413 90.525 1 31.94 ? O5 1VU 701 A 1 HETATM 30 O O6 1VU . . . C 3 198.156 1.304 92.325 1 35.03 -1 O6 1VU 701 A 1 HETATM 31 O O4 1VU . . . C 3 198.074 -1.249 92.942 1 31.36 ? O4 1VU 701 A 1 HETATM 32 C C13 1VU . . . C 3 197.399 -1.396 94.158 1 31.88 ? C13 1VU 701 A 1 HETATM 33 C C10 1VU . . . C 3 198.366 -2.111 95.112 1 31.66 ? C10 1VU 701 A 1 HETATM 34 C C11 1VU . . . C 3 197.669 -2.499 96.414 1 32.33 ? C11 1VU 701 A 1 HETATM 35 C C12 1VU . . . C 3 198.852 -3.399 94.397 1 27.78 ? C12 1VU 701 A 1 HETATM 36 C C9 1VU . . . C 3 199.474 -1.077 95.335 1 33.53 ? C9 1VU 701 A 1 HETATM 37 O O3 1VU . . . C 3 198.995 0.031 96.075 1 34.83 ? O3 1VU 701 A 1 HETATM 38 C C8 1VU . . . C 3 200.707 -1.644 96.057 1 33.33 ? C8 1VU 701 A 1 HETATM 39 O O2 1VU . . . C 3 201.448 -2.426 95.535 1 33.47 ? O2 1VU 701 A 1 HETATM 40 N N1 1VU . . . C 3 200.959 -1.155 97.416 1 35.78 ? N1 1VU 701 A 1 HETATM 41 C C7 1VU . . . C 3 202.14 -1.582 98.207 1 36.02 ? C7 1VU 701 A 1 HETATM 42 C C6 1VU . . . C 3 202.12 -3.082 98.486 1 32.71 ? C6 1VU 701 A 1 HETATM 43 C C5 1VU . . . C 3 200.797 -3.509 99.197 1 34.22 ? C5 1VU 701 A 1 HETATM 44 O O1 1VU . . . C 3 200.321 -2.878 100.087 1 34.67 ? O1 1VU 701 A 1 HETATM 45 N N 1VU . . . C 3 200.194 -4.741 98.733 1 32.66 ? N 1VU 701 A 1 HETATM 46 C C4 1VU . . . C 3 199.012 -5.273 99.335 1 35.29 ? C4 1VU 701 A 1 HETATM 47 C C3 1VU . . . C 3 199.472 -5.918 100.655 1 35.55 ? C3 1VU 701 A 1 HETATM 48 S S 1VU . . . C 3 198.071 -6.852 101.37 1 49.2 ? S 1VU 701 A 1 HETATM 49 C C2 1VU . . . C 3 198.214 -8.451 100.506 1 47.84 ? C2 1VU 701 A 1 HETATM 50 O O 1VU . . . C 3 198.941 -8.546 99.566 1 43.96 ? O 1VU 701 A 1 HETATM 51 C C1 1VU . . . C 3 197.407 -9.637 101.029 1 47.21 ? C1 1VU 701 A 1 HETATM 52 C C 1VU . . . C 3 196.857 -10.47 99.832 1 44.91 ? C 1VU 701 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 52 #