data_7D0Q # _model_server_result.job_id ATxgc_RwC0-sjdK3LJlLKA _model_server_result.datetime_utc '2024-11-22 14:28:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 7D0Q # _exptl.entry_id 7D0Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 837.624 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Butyryl Coenzyme A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.89 _cell.angle_gamma 90 _cell.entry_id 7D0Q _cell.length_a 126.871 _cell.length_b 39.599 _cell.length_c 87.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 96 A HIS 431 1_555 A N ALY 97 A ALY 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ALY 97 A ALY 432 1_555 A N THR 98 A THR 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A SG CYS 33 A CYS 368 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A SG CYS 36 A CYS 371 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A NE2 HIS 49 A HIS 384 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc4 A SG CYS 53 A CYS 388 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? # _chem_comp.formula 'C25 H42 N7 O17 P3 S' _chem_comp.formula_weight 837.624 _chem_comp.id BCO _chem_comp.mon_nstd_flag . _chem_comp.name 'Butyryl Coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} butanethioate (non-preferred name)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 N4 BCO doub 98 n y C15 N3 BCO sing 99 n y N4 C12 BCO sing 100 n y N3 C6 BCO doub 101 n y O9 P1 BCO doub 102 n n C12 N5 BCO sing 103 n n C12 C8 BCO doub 104 n y O3 C2 BCO sing 105 n n C6 C8 BCO sing 106 n y C6 N1 BCO sing 107 n y C2 C4 BCO sing 108 n n C2 C1 BCO sing 109 n n C8 N2 BCO sing 110 n y P1 O6 BCO sing 111 n n P1 O5 BCO sing 112 n n P1 O2 BCO sing 113 n n C4 N1 BCO sing 114 n n C4 O1 BCO sing 115 n n N1 C7 BCO sing 116 n y O2 C1 BCO sing 117 n n C1 C3 BCO sing 118 n n N2 C7 BCO doub 119 n y O1 C3 BCO sing 120 n n C3 C5 BCO sing 121 n n C5 O4 BCO sing 122 n n O4 P2 BCO sing 123 n n O10 P2 BCO doub 124 n n P2 O7 BCO sing 125 n n P2 O12 BCO sing 126 n n O7 P3 BCO sing 127 n n P3 O13 BCO doub 128 n n P3 O14 BCO sing 129 n n P3 O8 BCO sing 130 n n O8 C11 BCO sing 131 n n C14 C9 BCO sing 132 n n C11 C9 BCO sing 133 n n C9 C13 BCO sing 134 n n C9 C10 BCO sing 135 n n C10 O11 BCO sing 136 n n C10 C16 BCO sing 137 n n C16 O15 BCO doub 138 n n C16 N6 BCO sing 139 n n N6 C17 BCO sing 140 n n C17 C18 BCO sing 141 n n C18 C19 BCO sing 142 n n C19 O16 BCO doub 143 n n C19 N7 BCO sing 144 n n N7 C20 BCO sing 145 n n C20 C21 BCO sing 146 n n C21 S1 BCO sing 147 n n S1 C22 BCO sing 148 n n C22 O17 BCO doub 149 n n C22 C23 BCO sing 150 n n C23 C24 BCO sing 151 n n C24 C25 BCO sing 152 n n O5 H1 BCO sing 153 n n O6 H2 BCO sing 154 n n C1 H3 BCO sing 155 n n C2 H4 BCO sing 156 n n O3 H5 BCO sing 157 n n C4 H6 BCO sing 158 n n C7 H7 BCO sing 159 n n C15 H8 BCO sing 160 n n N5 H9 BCO sing 161 n n N5 H10 BCO sing 162 n n C3 H11 BCO sing 163 n n C5 H12 BCO sing 164 n n C5 H13 BCO sing 165 n n O12 H14 BCO sing 166 n n O14 H15 BCO sing 167 n n C11 H16 BCO sing 168 n n C11 H17 BCO sing 169 n n C13 H18 BCO sing 170 n n C13 H19 BCO sing 171 n n C13 H20 BCO sing 172 n n C14 H21 BCO sing 173 n n C14 H22 BCO sing 174 n n C14 H23 BCO sing 175 n n C10 H24 BCO sing 176 n n O11 H25 BCO sing 177 n n N6 H26 BCO sing 178 n n C17 H27 BCO sing 179 n n C18 H28 BCO sing 180 n n N7 H29 BCO sing 181 n n C20 H30 BCO sing 182 n n C20 H31 BCO sing 183 n n C21 H32 BCO sing 184 n n C21 H33 BCO sing 185 n n C23 H34 BCO sing 186 n n C24 H35 BCO sing 187 n n C25 H36 BCO sing 188 n n C25 H37 BCO sing 189 n n C25 H38 BCO sing 190 n n C17 H39 BCO sing 191 n n C18 H40 BCO sing 192 n n C23 H41 BCO sing 193 n n C24 H42 BCO sing 194 n n # _atom_sites.entry_id 7D0Q _atom_sites.fract_transf_matrix[1][1] 0.007882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005098 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 1 ZN ZN . D 4 BCO A 1 702 1 BCO BCO . E 5 CL A 1 703 1 CL CL . F 6 EDO A 1 704 1 EDO EDO . G 7 HOH A 1 801 18 HOH HOH . G 7 HOH A 2 802 39 HOH HOH . G 7 HOH A 3 803 15 HOH HOH . G 7 HOH A 4 804 42 HOH HOH . G 7 HOH A 5 805 27 HOH HOH . G 7 HOH A 6 806 62 HOH HOH . G 7 HOH A 7 807 57 HOH HOH . G 7 HOH A 8 808 3 HOH HOH . G 7 HOH A 9 809 16 HOH HOH . G 7 HOH A 10 810 25 HOH HOH . G 7 HOH A 11 811 22 HOH HOH . G 7 HOH A 12 812 11 HOH HOH . G 7 HOH A 13 813 26 HOH HOH . G 7 HOH A 14 814 28 HOH HOH . G 7 HOH A 15 815 4 HOH HOH . G 7 HOH A 16 816 6 HOH HOH . G 7 HOH A 17 817 2 HOH HOH . G 7 HOH A 18 818 21 HOH HOH . G 7 HOH A 19 819 60 HOH HOH . G 7 HOH A 20 820 23 HOH HOH . G 7 HOH A 21 821 53 HOH HOH . G 7 HOH A 22 822 9 HOH HOH . G 7 HOH A 23 823 1 HOH HOH . G 7 HOH A 24 824 61 HOH HOH . G 7 HOH A 25 825 31 HOH HOH . G 7 HOH A 26 826 47 HOH HOH . G 7 HOH A 27 827 41 HOH HOH . G 7 HOH A 28 828 50 HOH HOH . G 7 HOH A 29 829 32 HOH HOH . G 7 HOH A 30 830 29 HOH HOH . G 7 HOH A 31 831 19 HOH HOH . G 7 HOH A 32 832 40 HOH HOH . G 7 HOH A 33 833 64 HOH HOH . G 7 HOH A 34 834 8 HOH HOH . G 7 HOH A 35 835 17 HOH HOH . G 7 HOH A 36 836 10 HOH HOH . G 7 HOH A 37 837 66 HOH HOH . G 7 HOH A 38 838 20 HOH HOH . G 7 HOH A 39 839 14 HOH HOH . G 7 HOH A 40 840 58 HOH HOH . G 7 HOH A 41 841 33 HOH HOH . G 7 HOH A 42 842 12 HOH HOH . G 7 HOH A 43 843 54 HOH HOH . G 7 HOH A 44 844 49 HOH HOH . G 7 HOH A 45 845 44 HOH HOH . G 7 HOH A 46 846 51 HOH HOH . G 7 HOH A 47 847 38 HOH HOH . G 7 HOH A 48 848 43 HOH HOH . G 7 HOH A 49 849 34 HOH HOH . G 7 HOH A 50 850 13 HOH HOH . G 7 HOH A 51 851 65 HOH HOH . G 7 HOH A 52 852 35 HOH HOH . G 7 HOH A 53 853 46 HOH HOH . H 7 HOH B 1 101 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9 BCO . . . D 4 188.72 4.629 93.285 1 81.43 ? O9 BCO 702 A 1 HETATM 2 P P1 BCO . . . D 4 189.979 4.584 92.424 1 72.87 ? P1 BCO 702 A 1 HETATM 3 O O5 BCO . . . D 4 189.794 3.621 91.254 1 68.12 ? O5 BCO 702 A 1 HETATM 4 O O6 BCO . . . D 4 190.27 5.911 91.915 1 78.19 ? O6 BCO 702 A 1 HETATM 5 O O2 BCO . . . D 4 191.189 4.074 93.416 1 74.43 ? O2 BCO 702 A 1 HETATM 6 C C1 BCO . . . D 4 192.509 3.771 92.916 1 72.55 ? C1 BCO 702 A 1 HETATM 7 C C2 BCO . . . D 4 193.354 4.72 93.305 1 69.46 ? C2 BCO 702 A 1 HETATM 8 O O3 BCO . . . D 4 192.801 6.085 93.162 1 61.55 ? O3 BCO 702 A 1 HETATM 9 C C4 BCO . . . D 4 193.567 4.349 94.802 1 71.34 ? C4 BCO 702 A 1 HETATM 10 N N1 BCO . . . D 4 194.648 4.885 95.38 1 78.81 ? N1 BCO 702 A 1 HETATM 11 C C7 BCO . . . D 4 195.721 4.347 94.782 1 75.76 ? C7 BCO 702 A 1 HETATM 12 N N2 BCO . . . D 4 196.818 4.872 95.377 1 70.37 ? N2 BCO 702 A 1 HETATM 13 C C8 BCO . . . D 4 196.417 5.716 96.334 1 79.27 ? C8 BCO 702 A 1 HETATM 14 C C6 BCO . . . D 4 195.076 5.722 96.346 1 79.34 ? C6 BCO 702 A 1 HETATM 15 N N3 BCO . . . D 4 194.403 6.489 97.219 1 81.78 ? N3 BCO 702 A 1 HETATM 16 C C15 BCO . . . D 4 195.082 7.27 98.103 1 89.9 ? C15 BCO 702 A 1 HETATM 17 N N4 BCO . . . D 4 196.435 7.271 98.099 1 94.27 ? N4 BCO 702 A 1 HETATM 18 C C12 BCO . . . D 4 197.106 6.513 97.232 1 93.67 ? C12 BCO 702 A 1 HETATM 19 N N5 BCO . . . D 4 198.507 6.724 97.465 1 88.29 ? N5 BCO 702 A 1 HETATM 20 O O1 BCO . . . D 4 193.625 2.789 94.783 1 64.74 ? O1 BCO 702 A 1 HETATM 21 C C3 BCO . . . D 4 192.985 2.418 93.695 1 69.55 ? C3 BCO 702 A 1 HETATM 22 C C5 BCO . . . D 4 193.908 1.542 92.857 1 65.31 ? C5 BCO 702 A 1 HETATM 23 O O4 BCO . . . D 4 194.534 2.346 91.866 1 64.91 ? O4 BCO 702 A 1 HETATM 24 P P2 BCO . . . D 4 195.756 1.7 90.958 1 59.9 ? P2 BCO 702 A 1 HETATM 25 O O12 BCO . . . D 4 195.254 0.491 90.159 1 57.84 ? O12 BCO 702 A 1 HETATM 26 O O10 BCO . . . D 4 196.347 2.791 90.069 1 49.99 ? O10 BCO 702 A 1 HETATM 27 O O7 BCO . . . D 4 196.803 1.108 92.076 1 64.1 ? O7 BCO 702 A 1 HETATM 28 P P3 BCO . . . D 4 198.387 1.239 92.165 1 58.76 ? P3 BCO 702 A 1 HETATM 29 O O14 BCO . . . D 4 199.04 0.908 90.768 1 59.61 ? O14 BCO 702 A 1 HETATM 30 O O13 BCO . . . D 4 198.706 2.602 92.665 1 53.35 ? O13 BCO 702 A 1 HETATM 31 O O8 BCO . . . D 4 198.772 0.019 93.254 1 59.46 ? O8 BCO 702 A 1 HETATM 32 C C11 BCO . . . D 4 198.049 -0.152 94.482 1 60.51 ? C11 BCO 702 A 1 HETATM 33 C C9 BCO . . . D 4 198.995 -0.999 95.38 1 59.54 ? C9 BCO 702 A 1 HETATM 34 C C13 BCO . . . D 4 198.319 -1.337 96.671 1 55.09 ? C13 BCO 702 A 1 HETATM 35 C C14 BCO . . . D 4 199.366 -2.216 94.633 1 40.94 ? C14 BCO 702 A 1 HETATM 36 C C10 BCO . . . D 4 200.203 -0.041 95.559 1 60.84 ? C10 BCO 702 A 1 HETATM 37 O O11 BCO . . . D 4 199.773 1.135 96.183 1 58.5 ? O11 BCO 702 A 1 HETATM 38 C C16 BCO . . . D 4 201.385 -0.549 96.358 1 63.87 ? C16 BCO 702 A 1 HETATM 39 O O15 BCO . . . D 4 202.138 -1.316 95.899 1 63.12 ? O15 BCO 702 A 1 HETATM 40 N N6 BCO . . . D 4 201.586 0.026 97.735 1 63.38 ? N6 BCO 702 A 1 HETATM 41 C C17 BCO . . . D 4 202.714 -0.307 98.611 1 73.15 ? C17 BCO 702 A 1 HETATM 42 C C18 BCO . . . D 4 202.822 -1.836 98.905 1 69.87 ? C18 BCO 702 A 1 HETATM 43 C C19 BCO . . . D 4 201.553 -2.299 99.479 1 76.81 ? C19 BCO 702 A 1 HETATM 44 O O16 BCO . . . D 4 201.031 -1.702 100.354 1 78.28 ? O16 BCO 702 A 1 HETATM 45 N N7 BCO . . . D 4 200.975 -3.545 98.946 1 68.14 ? N7 BCO 702 A 1 HETATM 46 C C20 BCO . . . D 4 199.681 -4.081 99.52 1 77.95 ? C20 BCO 702 A 1 HETATM 47 C C21 BCO . . . D 4 200.01 -4.633 100.958 1 94.77 ? C21 BCO 702 A 1 HETATM 48 S S1 BCO . . . D 4 198.65 -5.703 101.422 1 109.9 ? S1 BCO 702 A 1 HETATM 49 C C22 BCO . . . D 4 199.294 -7.39 101.293 1 118.16 ? C22 BCO 702 A 1 HETATM 50 O O17 BCO . . . D 4 200.43 -7.568 100.887 1 118.7 ? O17 BCO 702 A 1 HETATM 51 C C23 BCO . . . D 4 198.352 -8.602 101.708 1 104.45 ? C23 BCO 702 A 1 HETATM 52 C C24 BCO . . . D 4 197.748 -9.29 100.486 1 88.24 ? C24 BCO 702 A 1 HETATM 53 C C25 BCO . . . D 4 197.163 -8.279 99.48 1 91.73 ? C25 BCO 702 A 1 # _model_server_stats.io_time_ms 129 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #