data_7D0R
#
_model_server_result.job_id            5l_LBi3OJ53bxAK2pd0vlA 
_model_server_result.datetime_utc      '2024-11-22 14:12:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d0r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    7D0R 
#
_exptl.entry_id    7D0R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          123.24 
_cell.angle_gamma         90 
_cell.entry_id            7D0R 
_cell.length_a            127.345 
_cell.length_b            39.636 
_cell.length_c            88.096 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D0R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 96 A HIS 431 1_555 A N ALY 97 A ALY 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C ALY 97 A ALY 432 1_555 A N THR 98 A THR 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A SG CYS 33 A CYS 368 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc2 A SG CYS 36 A CYS 371 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc3 A NE2 HIS 49 A HIS 384 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc4 A SG CYS 53 A CYS 388 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 206 n n 
C1 C2 EDO sing 207 n n 
C1 H11 EDO sing 208 n n 
C1 H12 EDO sing 209 n n 
O1 HO1 EDO sing 210 n n 
C2 O2 EDO sing 211 n n 
C2 H21 EDO sing 212 n n 
C2 H22 EDO sing 213 n n 
O2 HO2 EDO sing 214 n n 
#
_atom_sites.entry_id                     7D0R 
_atom_sites.fract_transf_matrix[1][1]    0.007853 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005146 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02523 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013572 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 701 1 EDO EDO . 
D 4 ZN A 1 702 1 ZN ZN . 
E 5 COO A 1 703 1 COO COO . 
F 6 HOH A 1 801 13 HOH HOH . 
F 6 HOH A 2 802 51 HOH HOH . 
F 6 HOH A 3 803 49 HOH HOH . 
F 6 HOH A 4 804 59 HOH HOH . 
F 6 HOH A 5 805 28 HOH HOH . 
F 6 HOH A 6 806 4 HOH HOH . 
F 6 HOH A 7 807 72 HOH HOH . 
F 6 HOH A 8 808 38 HOH HOH . 
F 6 HOH A 9 809 58 HOH HOH . 
F 6 HOH A 10 810 47 HOH HOH . 
F 6 HOH A 11 811 30 HOH HOH . 
F 6 HOH A 12 812 41 HOH HOH . 
F 6 HOH A 13 813 7 HOH HOH . 
F 6 HOH A 14 814 45 HOH HOH . 
F 6 HOH A 15 815 12 HOH HOH . 
F 6 HOH A 16 816 71 HOH HOH . 
F 6 HOH A 17 817 83 HOH HOH . 
F 6 HOH A 18 818 89 HOH HOH . 
F 6 HOH A 19 819 95 HOH HOH . 
F 6 HOH A 20 820 81 HOH HOH . 
F 6 HOH A 21 821 43 HOH HOH . 
F 6 HOH A 22 822 22 HOH HOH . 
F 6 HOH A 23 823 73 HOH HOH . 
F 6 HOH A 24 824 8 HOH HOH . 
F 6 HOH A 25 825 63 HOH HOH . 
F 6 HOH A 26 826 1 HOH HOH . 
F 6 HOH A 27 827 10 HOH HOH . 
F 6 HOH A 28 828 33 HOH HOH . 
F 6 HOH A 29 829 84 HOH HOH . 
F 6 HOH A 30 830 3 HOH HOH . 
F 6 HOH A 31 831 26 HOH HOH . 
F 6 HOH A 32 832 32 HOH HOH . 
F 6 HOH A 33 833 42 HOH HOH . 
F 6 HOH A 34 834 39 HOH HOH . 
F 6 HOH A 35 835 56 HOH HOH . 
F 6 HOH A 36 836 19 HOH HOH . 
F 6 HOH A 37 837 52 HOH HOH . 
F 6 HOH A 38 838 23 HOH HOH . 
F 6 HOH A 39 839 5 HOH HOH . 
F 6 HOH A 40 840 82 HOH HOH . 
F 6 HOH A 41 841 21 HOH HOH . 
F 6 HOH A 42 842 74 HOH HOH . 
F 6 HOH A 43 843 55 HOH HOH . 
F 6 HOH A 44 844 88 HOH HOH . 
F 6 HOH A 45 845 31 HOH HOH . 
F 6 HOH A 46 846 54 HOH HOH . 
F 6 HOH A 47 847 9 HOH HOH . 
F 6 HOH A 48 848 98 HOH HOH . 
F 6 HOH A 49 849 11 HOH HOH . 
F 6 HOH A 50 850 34 HOH HOH . 
F 6 HOH A 51 851 15 HOH HOH . 
F 6 HOH A 52 852 86 HOH HOH . 
F 6 HOH A 53 853 46 HOH HOH . 
F 6 HOH A 54 854 29 HOH HOH . 
F 6 HOH A 55 855 66 HOH HOH . 
F 6 HOH A 56 856 50 HOH HOH . 
F 6 HOH A 57 857 24 HOH HOH . 
F 6 HOH A 58 858 94 HOH HOH . 
F 6 HOH A 59 859 53 HOH HOH . 
F 6 HOH A 60 860 18 HOH HOH . 
F 6 HOH A 61 861 79 HOH HOH . 
F 6 HOH A 62 862 87 HOH HOH . 
F 6 HOH A 63 863 16 HOH HOH . 
F 6 HOH A 64 864 100 HOH HOH . 
F 6 HOH A 65 865 90 HOH HOH . 
F 6 HOH A 66 866 35 HOH HOH . 
F 6 HOH A 67 867 99 HOH HOH . 
F 6 HOH A 68 868 62 HOH HOH . 
F 6 HOH A 69 869 27 HOH HOH . 
F 6 HOH A 70 870 76 HOH HOH . 
F 6 HOH A 71 871 78 HOH HOH . 
F 6 HOH A 72 872 20 HOH HOH . 
F 6 HOH A 73 873 17 HOH HOH . 
F 6 HOH A 74 874 36 HOH HOH . 
F 6 HOH A 75 875 64 HOH HOH . 
F 6 HOH A 76 876 96 HOH HOH . 
F 6 HOH A 77 877 101 HOH HOH . 
F 6 HOH A 78 878 40 HOH HOH . 
F 6 HOH A 79 879 25 HOH HOH . 
F 6 HOH A 80 880 92 HOH HOH . 
F 6 HOH A 81 881 65 HOH HOH . 
F 6 HOH A 82 882 97 HOH HOH . 
F 6 HOH A 83 883 85 HOH HOH . 
F 6 HOH A 84 884 75 HOH HOH . 
F 6 HOH A 85 885 93 HOH HOH . 
F 6 HOH A 86 886 67 HOH HOH . 
G 6 HOH B 1 101 70 HOH HOH . 
G 6 HOH B 2 102 91 HOH HOH . 
G 6 HOH B 3 103 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 205.276 5.235 82.843 1 78.45 ? C1 EDO 701 A 1 
HETATM 2 O O1 EDO . . . C 3 205.504 4.219 81.859 1 82.86 ? O1 EDO 701 A 1 
HETATM 3 C C2 EDO . . . C 3 206.345 5.164 83.929 1 78.6 ? C2 EDO 701 A 1 
HETATM 4 O O2 EDO . . . C 3 207.649 5.464 83.406 1 79.81 ? O2 EDO 701 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#