data_7D0R # _model_server_result.job_id N8cGYmukQP3WrOom4d4wkQ _model_server_result.datetime_utc '2024-11-22 13:52:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 7D0R # _exptl.entry_id 7D0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 835.608 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CROTONYL COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.24 _cell.angle_gamma 90 _cell.entry_id 7D0R _cell.length_a 127.345 _cell.length_b 39.636 _cell.length_c 88.096 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 96 A HIS 431 1_555 A N ALY 97 A ALY 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ALY 97 A ALY 432 1_555 A N THR 98 A THR 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A SG CYS 33 A CYS 368 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A SG CYS 36 A CYS 371 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 A NE2 HIS 49 A HIS 384 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc4 A SG CYS 53 A CYS 388 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C25 H40 N7 O17 P3 S' _chem_comp.formula_weight 835.608 _chem_comp.id COO _chem_comp.mon_nstd_flag . _chem_comp.name 'CROTONYL COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 O1 COO sing 98 n n C13 H13 COO sing 99 n n C13 C1 COO sing 100 n n C13 C11 COO sing 101 n n C11 C15 COO sing 102 n n C11 C14 COO sing 103 n n C11 C12 COO sing 104 n n C14 H141 COO sing 105 n n C14 H142 COO sing 106 n n C14 H143 COO sing 107 n n C12 H121 COO sing 108 n n C12 H122 COO sing 109 n n C12 O6A COO sing 110 n n O6A P2A COO sing 111 n n P2A O4A COO doub 112 n n P2A O5A COO sing 113 n n P2A O3A COO sing 114 n n O5A H5A COO sing 115 n n O3A P1A COO sing 116 n n P1A O2A COO doub 117 n n P1A O1A COO sing 118 n n P1A O5X COO sing 119 n n O1A H1A COO sing 120 n n O5X C5X COO sing 121 n n C5X H5X1 COO sing 122 n n C5X H5X2 COO sing 123 n n C5X C4X COO sing 124 n n C4X H4X COO sing 125 n n C4X O4X COO sing 126 n n C4X C3X COO sing 127 n n O4X C1X COO sing 128 n n C3X C2X COO sing 129 n n C3X H3X COO sing 130 n n C3X O3X COO sing 131 n n O3X P3X COO sing 132 n n P3X O9A COO doub 133 n n P3X O7A COO sing 134 n n P3X O8A COO sing 135 n n O7A H7A COO sing 136 n n O8A H2 COO sing 137 n n C2X C1X COO sing 138 n n C2X H2X COO sing 139 n n C2X O2X COO sing 140 n n O2X H1 COO sing 141 n n C1X H1X COO sing 142 n n C1X N9A COO sing 143 n n N9A C8A COO sing 144 n y N9A C4A COO sing 145 n y C8A H8A COO sing 146 n n C8A N7A COO doub 147 n y N7A C5A COO sing 148 n y C5A C6A COO doub 149 n y C5A C4A COO sing 150 n y C4A N3A COO doub 151 n y N3A C2A COO sing 152 n y C2A N1A COO doub 153 n y C2A H2A COO sing 154 n n N1A C6A COO sing 155 n y C6A N6A COO sing 156 n n N6A H6A1 COO sing 157 n n N6A H6A2 COO sing 158 n n O1 HO1 COO sing 159 n n C1 O2 COO doub 160 n n C1 N1 COO sing 161 n n N1 HN1 COO sing 162 n n N1 C2 COO sing 163 n n C2 H21 COO sing 164 n n C2 H22 COO sing 165 n n C2 C3 COO sing 166 n n C3 H31 COO sing 167 n n C3 H32 COO sing 168 n n C3 C4 COO sing 169 n n C4 O3 COO doub 170 n n C4 N2 COO sing 171 n n N2 HN2 COO sing 172 n n N2 C5 COO sing 173 n n C5 H51 COO sing 174 n n C5 H52 COO sing 175 n n C5 C6 COO sing 176 n n C6 H61 COO sing 177 n n C6 H62 COO sing 178 n n C6 S1 COO sing 179 n n S1 C7 COO sing 180 n n C7 O4 COO doub 181 n n C7 C8 COO sing 182 n n C8 H8 COO sing 183 n n C8 C9 COO doub 184 n n C9 H9 COO sing 185 n n C9 C10 COO sing 186 n n C10 H101 COO sing 187 n n C10 H102 COO sing 188 n n C10 H103 COO sing 189 n n C15 H151 COO sing 190 n n C15 H152 COO sing 191 n n C15 H153 COO sing 192 n n # _atom_sites.entry_id 7D0R _atom_sites.fract_transf_matrix[1][1] 0.007853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005146 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 701 1 EDO EDO . D 4 ZN A 1 702 1 ZN ZN . E 5 COO A 1 703 1 COO COO . F 6 HOH A 1 801 13 HOH HOH . F 6 HOH A 2 802 51 HOH HOH . F 6 HOH A 3 803 49 HOH HOH . F 6 HOH A 4 804 59 HOH HOH . F 6 HOH A 5 805 28 HOH HOH . F 6 HOH A 6 806 4 HOH HOH . F 6 HOH A 7 807 72 HOH HOH . F 6 HOH A 8 808 38 HOH HOH . F 6 HOH A 9 809 58 HOH HOH . F 6 HOH A 10 810 47 HOH HOH . F 6 HOH A 11 811 30 HOH HOH . F 6 HOH A 12 812 41 HOH HOH . F 6 HOH A 13 813 7 HOH HOH . F 6 HOH A 14 814 45 HOH HOH . F 6 HOH A 15 815 12 HOH HOH . F 6 HOH A 16 816 71 HOH HOH . F 6 HOH A 17 817 83 HOH HOH . F 6 HOH A 18 818 89 HOH HOH . F 6 HOH A 19 819 95 HOH HOH . F 6 HOH A 20 820 81 HOH HOH . F 6 HOH A 21 821 43 HOH HOH . F 6 HOH A 22 822 22 HOH HOH . F 6 HOH A 23 823 73 HOH HOH . F 6 HOH A 24 824 8 HOH HOH . F 6 HOH A 25 825 63 HOH HOH . F 6 HOH A 26 826 1 HOH HOH . F 6 HOH A 27 827 10 HOH HOH . F 6 HOH A 28 828 33 HOH HOH . F 6 HOH A 29 829 84 HOH HOH . F 6 HOH A 30 830 3 HOH HOH . F 6 HOH A 31 831 26 HOH HOH . F 6 HOH A 32 832 32 HOH HOH . F 6 HOH A 33 833 42 HOH HOH . F 6 HOH A 34 834 39 HOH HOH . F 6 HOH A 35 835 56 HOH HOH . F 6 HOH A 36 836 19 HOH HOH . F 6 HOH A 37 837 52 HOH HOH . F 6 HOH A 38 838 23 HOH HOH . F 6 HOH A 39 839 5 HOH HOH . F 6 HOH A 40 840 82 HOH HOH . F 6 HOH A 41 841 21 HOH HOH . F 6 HOH A 42 842 74 HOH HOH . F 6 HOH A 43 843 55 HOH HOH . F 6 HOH A 44 844 88 HOH HOH . F 6 HOH A 45 845 31 HOH HOH . F 6 HOH A 46 846 54 HOH HOH . F 6 HOH A 47 847 9 HOH HOH . F 6 HOH A 48 848 98 HOH HOH . F 6 HOH A 49 849 11 HOH HOH . F 6 HOH A 50 850 34 HOH HOH . F 6 HOH A 51 851 15 HOH HOH . F 6 HOH A 52 852 86 HOH HOH . F 6 HOH A 53 853 46 HOH HOH . F 6 HOH A 54 854 29 HOH HOH . F 6 HOH A 55 855 66 HOH HOH . F 6 HOH A 56 856 50 HOH HOH . F 6 HOH A 57 857 24 HOH HOH . F 6 HOH A 58 858 94 HOH HOH . F 6 HOH A 59 859 53 HOH HOH . F 6 HOH A 60 860 18 HOH HOH . F 6 HOH A 61 861 79 HOH HOH . F 6 HOH A 62 862 87 HOH HOH . F 6 HOH A 63 863 16 HOH HOH . F 6 HOH A 64 864 100 HOH HOH . F 6 HOH A 65 865 90 HOH HOH . F 6 HOH A 66 866 35 HOH HOH . F 6 HOH A 67 867 99 HOH HOH . F 6 HOH A 68 868 62 HOH HOH . F 6 HOH A 69 869 27 HOH HOH . F 6 HOH A 70 870 76 HOH HOH . F 6 HOH A 71 871 78 HOH HOH . F 6 HOH A 72 872 20 HOH HOH . F 6 HOH A 73 873 17 HOH HOH . F 6 HOH A 74 874 36 HOH HOH . F 6 HOH A 75 875 64 HOH HOH . F 6 HOH A 76 876 96 HOH HOH . F 6 HOH A 77 877 101 HOH HOH . F 6 HOH A 78 878 40 HOH HOH . F 6 HOH A 79 879 25 HOH HOH . F 6 HOH A 80 880 92 HOH HOH . F 6 HOH A 81 881 65 HOH HOH . F 6 HOH A 82 882 97 HOH HOH . F 6 HOH A 83 883 85 HOH HOH . F 6 HOH A 84 884 75 HOH HOH . F 6 HOH A 85 885 93 HOH HOH . F 6 HOH A 86 886 67 HOH HOH . G 6 HOH B 1 101 70 HOH HOH . G 6 HOH B 2 102 91 HOH HOH . G 6 HOH B 3 103 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 COO . . . E 5 200.185 -0.079 95.905 1 49.95 ? C13 COO 703 A 1 HETATM 2 C C11 COO . . . E 5 199.189 -1.055 95.209 1 44.21 ? C11 COO 703 A 1 HETATM 3 C C14 COO . . . E 5 199.776 -2.281 94.505 1 38.88 ? C14 COO 703 A 1 HETATM 4 C C12 COO . . . E 5 198.341 -0.243 94.22 1 42.17 ? C12 COO 703 A 1 HETATM 5 O O6A COO . . . E 5 199.135 0.001 93.078 1 37.9 ? O6A COO 703 A 1 HETATM 6 P P2A COO . . . E 5 198.671 1.092 91.984 1 35.19 ? P2A COO 703 A 1 HETATM 7 O O4A COO . . . E 5 199.317 0.754 90.697 1 36.09 -1 O4A COO 703 A 1 HETATM 8 O O5A COO . . . E 5 199 2.458 92.456 1 35.9 ? O5A COO 703 A 1 HETATM 9 O O3A COO . . . E 5 197.063 0.887 91.911 1 37.2 ? O3A COO 703 A 1 HETATM 10 P P1A COO . . . E 5 196.081 1.59 90.834 1 38.25 ? P1A COO 703 A 1 HETATM 11 O O2A COO . . . E 5 196.765 2.633 90.027 1 33.77 ? O2A COO 703 A 1 HETATM 12 O O1A COO . . . E 5 195.456 0.511 90.027 1 36.12 -1 O1A COO 703 A 1 HETATM 13 O O5X COO . . . E 5 194.973 2.28 91.761 1 41.28 ? O5X COO 703 A 1 HETATM 14 C C5X COO . . . E 5 194.089 1.456 92.455 1 46.81 ? C5X COO 703 A 1 HETATM 15 C C4X COO . . . E 5 193.105 2.303 93.267 1 51.91 ? C4X COO 703 A 1 HETATM 16 O O4X COO . . . E 5 193.84 2.713 94.58 1 47.55 ? O4X COO 703 A 1 HETATM 17 C C3X COO . . . E 5 192.693 3.426 92.804 1 58.58 ? C3X COO 703 A 1 HETATM 18 O O3X COO . . . E 5 191.348 3.642 93.088 1 61.32 ? O3X COO 703 A 1 HETATM 19 P P3X COO . . . E 5 190.268 4.436 92.181 1 59.17 ? P3X COO 703 A 1 HETATM 20 O O9A COO . . . E 5 189.954 3.619 90.971 1 56.8 ? O9A COO 703 A 1 HETATM 21 O O7A COO . . . E 5 190.84 5.759 91.802 1 64.28 -1 O7A COO 703 A 1 HETATM 22 O O8A COO . . . E 5 189.081 4.568 93.086 1 56.54 -1 O8A COO 703 A 1 HETATM 23 C C2X COO . . . E 5 193.613 4.565 93.31 1 58.98 ? C2X COO 703 A 1 HETATM 24 O O2X COO . . . E 5 193.309 5.888 92.998 1 55.5 ? O2X COO 703 A 1 HETATM 25 C C1X COO . . . E 5 193.893 4.211 94.548 1 54.67 ? C1X COO 703 A 1 HETATM 26 N N9A COO . . . E 5 195.227 4.566 95.071 1 54.1 ? N9A COO 703 A 1 HETATM 27 C C8A COO . . . E 5 196.389 4.024 94.745 1 52.07 ? C8A COO 703 A 1 HETATM 28 N N7A COO . . . E 5 197.356 4.596 95.449 1 51.07 ? N7A COO 703 A 1 HETATM 29 C C5A COO . . . E 5 196.802 5.513 96.251 1 56.62 ? C5A COO 703 A 1 HETATM 30 C C4A COO . . . E 5 195.424 5.483 96.012 1 56.55 ? C4A COO 703 A 1 HETATM 31 N N3A COO . . . E 5 194.607 6.303 96.683 1 55.47 ? N3A COO 703 A 1 HETATM 32 C C2A COO . . . E 5 195.096 7.149 97.578 1 60.79 ? C2A COO 703 A 1 HETATM 33 N N1A COO . . . E 5 196.4 7.221 97.848 1 60.29 ? N1A COO 703 A 1 HETATM 34 C C6A COO . . . E 5 197.277 6.44 97.222 1 59.93 ? C6A COO 703 A 1 HETATM 35 N N6A COO . . . E 5 198.652 6.537 97.529 1 59.52 ? N6A COO 703 A 1 HETATM 36 O O1 COO . . . E 5 200.418 1.143 95.246 1 54.2 ? O1 COO 703 A 1 HETATM 37 C C1 COO . . . E 5 201.512 -0.745 96.319 1 51.38 ? C1 COO 703 A 1 HETATM 38 O O2 COO . . . E 5 202.127 -1.634 95.805 1 43.48 ? O2 COO 703 A 1 HETATM 39 N N1 COO . . . E 5 201.983 -0.045 97.438 1 56.94 ? N1 COO 703 A 1 HETATM 40 C C2 COO . . . E 5 202.688 -0.358 98.599 1 63.7 ? C2 COO 703 A 1 HETATM 41 C C3 COO . . . E 5 202.648 -1.848 98.776 1 66.85 ? C3 COO 703 A 1 HETATM 42 C C4 COO . . . E 5 201.403 -2.434 99.397 1 72.54 ? C4 COO 703 A 1 HETATM 43 O O3 COO . . . E 5 200.871 -1.878 100.312 1 70.44 ? O3 COO 703 A 1 HETATM 44 N N2 COO . . . E 5 200.93 -3.669 98.881 1 69.2 ? N2 COO 703 A 1 HETATM 45 C C5 COO . . . E 5 199.818 -4.265 99.559 1 82.64 ? C5 COO 703 A 1 HETATM 46 C C6 COO . . . E 5 200.513 -4.823 100.798 1 93.26 ? C6 COO 703 A 1 HETATM 47 S S1 COO . . . E 5 200.686 -6.537 100.271 1 103.25 ? S1 COO 703 A 1 HETATM 48 C C7 COO . . . E 5 200.975 -7.327 101.606 1 106.46 ? C7 COO 703 A 1 HETATM 49 O O4 COO . . . E 5 201.294 -6.764 102.64 1 103.77 ? O4 COO 703 A 1 HETATM 50 C C8 COO . . . E 5 200.434 -8.641 101.646 1 105.35 ? C8 COO 703 A 1 HETATM 51 C C9 COO . . . E 5 199.113 -8.438 101.443 1 101.17 ? C9 COO 703 A 1 HETATM 52 C C10 COO . . . E 5 198.064 -9.503 101.385 1 85.37 ? C10 COO 703 A 1 HETATM 53 C C15 COO . . . E 5 198.282 -1.607 96.303 1 43.23 ? C15 COO 703 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 53 #