data_7D1P # _model_server_result.job_id e7SaICHO1LG2jNSg4RtYPw _model_server_result.datetime_utc '2024-11-15 13:56:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7D1P # _exptl.entry_id 7D1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D1P _cell.length_a 50.516 _cell.length_b 73.766 _cell.length_c 84.421 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 96 1_555 A SG CYS 85 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf2 A SG CYS 96 A CYS 120 1_555 A SG CYS 194 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc1 A NE2 HIS 16 A HIS 40 1_555 E CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc2 A OD1 ASP 17 A ASP 41 1_555 E CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc3 A OD2 ASP 17 A ASP 41 1_555 E CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc4 A OE1 GLU 27 A GLU 51 1_555 G CD CD . A CD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc5 A OE2 GLU 27 A GLU 51 1_555 G CD CD . A CD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc6 A OD1 ASP 65 A ASP 89 1_555 H CD CD . A CD 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc7 A OD1 ASP 71 A ASP 95 1_555 G CD CD . A CD 406 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 A NE2 HIS 104 A HIS 128 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc9 A OD2 ASP 120 A ASP 144 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 A OD1 ASP 120 A ASP 144 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc11 A OD1 ASN 141 A ASN 165 1_555 I CD CD . A CD 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc12 A OE2 GLU 159 A GLU 183 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc13 A OE1 GLU 160 A GLU 184 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc14 A NE2 HIS 176 A HIS 200 1_555 G CD CD . A CD 406 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc15 A OE2 GLU 196 A GLU 220 1_555 F CD CD . A CD 405 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc16 A OD1 ASP 214 A ASP 238 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc17 A OD2 ASP 214 A ASP 238 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc18 A OD1 ASP 273 A ASP 297 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc19 A OD2 ASP 273 A ASP 297 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc20 A OD2 ASP 295 A ASP 319 1_555 I CD CD . A CD 408 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc21 A NE2 HIS 298 A HIS 322 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc22 A OD1 ASP 301 A ASP 325 1_555 E CD CD . A CD 404 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc23 A OD2 ASP 301 A ASP 325 1_555 E CD CD . A CD 404 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc24 A OE1 GLU 304 A GLU 328 1_555 J CD CD . A CD 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc25 A NE2 HIS 309 A HIS 333 1_555 J CD CD . A CD 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc26 B CD CD . A CD 401 1_555 K O1 BCT . A BCT 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc27 C CD CD . A CD 402 1_555 K O1 BCT . A BCT 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc28 E CD CD . A CD 404 1_555 L O HOH . A HOH 535 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc29 E CD CD . A CD 404 1_555 L O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc30 G CD CD . A CD 406 1_555 L O HOH . A HOH 512 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc31 G CD CD . A CD 406 1_555 L O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc32 I CD CD . A CD 408 1_555 L O HOH . A HOH 501 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc33 J CD CD . A CD 409 1_555 L O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc34 J CD CD . A CD 409 1_555 L O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc35 J CD CD . A CD 409 1_555 L O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc36 J CD CD . A CD 409 1_555 L O HOH . A HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7D1P _atom_sites.fract_transf_matrix[1][1] 0.019796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 401 401 CD CD . C 2 CD A 1 402 402 CD CD . D 2 CD A 1 403 403 CD CD . E 2 CD A 1 404 404 CD CD . F 2 CD A 1 405 405 CD CD . G 2 CD A 1 406 406 CD CD . H 2 CD A 1 407 407 CD CD . I 2 CD A 1 408 408 CD CD . J 2 CD A 1 409 409 CD CD . K 3 BCT A 1 410 501 BCT CAR . L 4 HOH A 1 501 104 HOH HOH . L 4 HOH A 2 502 95 HOH HOH . L 4 HOH A 3 503 61 HOH HOH . L 4 HOH A 4 504 88 HOH HOH . L 4 HOH A 5 505 3 HOH HOH . L 4 HOH A 6 506 79 HOH HOH . L 4 HOH A 7 507 77 HOH HOH . L 4 HOH A 8 508 35 HOH HOH . L 4 HOH A 9 509 21 HOH HOH . L 4 HOH A 10 510 7 HOH HOH . L 4 HOH A 11 511 24 HOH HOH . L 4 HOH A 12 512 5 HOH HOH . L 4 HOH A 13 513 55 HOH HOH . L 4 HOH A 14 514 37 HOH HOH . L 4 HOH A 15 515 23 HOH HOH . L 4 HOH A 16 516 94 HOH HOH . L 4 HOH A 17 517 67 HOH HOH . L 4 HOH A 18 518 52 HOH HOH . L 4 HOH A 19 519 9 HOH HOH . L 4 HOH A 20 520 68 HOH HOH . L 4 HOH A 21 521 14 HOH HOH . L 4 HOH A 22 522 39 HOH HOH . L 4 HOH A 23 523 38 HOH HOH . L 4 HOH A 24 524 96 HOH HOH . L 4 HOH A 25 525 47 HOH HOH . L 4 HOH A 26 526 46 HOH HOH . L 4 HOH A 27 527 69 HOH HOH . L 4 HOH A 28 528 41 HOH HOH . L 4 HOH A 29 529 80 HOH HOH . L 4 HOH A 30 530 27 HOH HOH . L 4 HOH A 31 531 93 HOH HOH . L 4 HOH A 32 532 65 HOH HOH . L 4 HOH A 33 533 50 HOH HOH . L 4 HOH A 34 534 56 HOH HOH . L 4 HOH A 35 535 2 HOH HOH . L 4 HOH A 36 536 89 HOH HOH . L 4 HOH A 37 537 83 HOH HOH . L 4 HOH A 38 538 4 HOH HOH . L 4 HOH A 39 539 76 HOH HOH . L 4 HOH A 40 540 1 HOH HOH . L 4 HOH A 41 541 25 HOH HOH . L 4 HOH A 42 542 74 HOH HOH . L 4 HOH A 43 543 75 HOH HOH . L 4 HOH A 44 544 64 HOH HOH . L 4 HOH A 45 545 70 HOH HOH . L 4 HOH A 46 546 53 HOH HOH . L 4 HOH A 47 547 78 HOH HOH . L 4 HOH A 48 548 85 HOH HOH . L 4 HOH A 49 549 13 HOH HOH . L 4 HOH A 50 550 62 HOH HOH . L 4 HOH A 51 551 71 HOH HOH . L 4 HOH A 52 552 20 HOH HOH . L 4 HOH A 53 553 90 HOH HOH . L 4 HOH A 54 554 22 HOH HOH . L 4 HOH A 55 555 49 HOH HOH . L 4 HOH A 56 556 92 HOH HOH . L 4 HOH A 57 557 60 HOH HOH . L 4 HOH A 58 558 99 HOH HOH . L 4 HOH A 59 559 100 HOH HOH . L 4 HOH A 60 560 73 HOH HOH . L 4 HOH A 61 561 72 HOH HOH . L 4 HOH A 62 562 40 HOH HOH . L 4 HOH A 63 563 29 HOH HOH . L 4 HOH A 64 564 98 HOH HOH . L 4 HOH A 65 565 86 HOH HOH . L 4 HOH A 66 566 63 HOH HOH . L 4 HOH A 67 567 8 HOH HOH . L 4 HOH A 68 568 44 HOH HOH . L 4 HOH A 69 569 48 HOH HOH . L 4 HOH A 70 570 42 HOH HOH . L 4 HOH A 71 571 82 HOH HOH . L 4 HOH A 72 572 15 HOH HOH . L 4 HOH A 73 573 26 HOH HOH . L 4 HOH A 74 574 91 HOH HOH . L 4 HOH A 75 575 33 HOH HOH . L 4 HOH A 76 576 54 HOH HOH . L 4 HOH A 77 577 28 HOH HOH . L 4 HOH A 78 578 17 HOH HOH . L 4 HOH A 79 579 36 HOH HOH . L 4 HOH A 80 580 45 HOH HOH . L 4 HOH A 81 581 81 HOH HOH . L 4 HOH A 82 582 12 HOH HOH . L 4 HOH A 83 583 97 HOH HOH . L 4 HOH A 84 584 43 HOH HOH . L 4 HOH A 85 585 57 HOH HOH . L 4 HOH A 86 586 18 HOH HOH . L 4 HOH A 87 587 11 HOH HOH . L 4 HOH A 88 588 32 HOH HOH . L 4 HOH A 89 589 10 HOH HOH . L 4 HOH A 90 590 51 HOH HOH . L 4 HOH A 91 591 31 HOH HOH . L 4 HOH A 92 592 58 HOH HOH . L 4 HOH A 93 593 66 HOH HOH . L 4 HOH A 94 594 6 HOH HOH . L 4 HOH A 95 595 84 HOH HOH . L 4 HOH A 96 596 30 HOH HOH . L 4 HOH A 97 597 103 HOH HOH . L 4 HOH A 98 598 87 HOH HOH . L 4 HOH A 99 599 59 HOH HOH . L 4 HOH A 100 600 16 HOH HOH . L 4 HOH A 101 601 102 HOH HOH . L 4 HOH A 102 602 19 HOH HOH . L 4 HOH A 103 603 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.714 _atom_site.Cartn_y -16.8 _atom_site.Cartn_z 4.86 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #