data_7D21 # _model_server_result.job_id vaHHJxcUKcuZR5rwtD05FA _model_server_result.datetime_utc '2024-11-15 14:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 7D21 # _exptl.entry_id 7D21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D21 _cell.length_a 55.646 _cell.length_b 70.932 _cell.length_c 80.556 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 96 1_555 A SG CYS 85 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf2 A SG CYS 96 A CYS 120 1_555 A SG CYS 194 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc1 A NE2 HIS 2 A HIS 26 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc2 A OD1 ASP 71 A ASP 95 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc3 A NE2 HIS 104 A HIS 128 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 A OD2 ASP 120 A ASP 144 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 A OD1 ASP 120 A ASP 144 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 A OE2 GLU 160 A GLU 184 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc7 A NE2 HIS 176 A HIS 200 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 A NZ LYS 180 A LYS 204 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc9 A OD2 ASP 214 A ASP 238 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc10 A OE1 GLU 251 A GLU 275 1_555 D ZN ZN . A ZN 403 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc11 A NE2 HIS 275 A HIS 299 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc12 A ND1 HIS 287 A HIS 311 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc13 A NE2 HIS 298 A HIS 322 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc14 A NE2 HIS 309 A HIS 333 1_555 D ZN ZN . A ZN 403 3_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc15 B ZN ZN . A ZN 401 1_555 G O8 EPE . A EPE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc16 C ZN ZN . A ZN 402 1_555 G O8 EPE . A EPE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc17 D ZN ZN . A ZN 403 1_555 H O HOH . A HOH 620 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 7D21 _atom_sites.fract_transf_matrix[1][1] 0.017971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 2 ZN A 1 402 402 ZN ZN . D 2 ZN A 1 403 403 ZN ZN . E 2 ZN A 1 404 404 ZN ZN . F 2 ZN A 1 405 405 ZN ZN . G 3 EPE A 1 406 501 EPE EPE . H 4 HOH A 1 501 12 HOH HOH . H 4 HOH A 2 502 78 HOH HOH . H 4 HOH A 3 503 76 HOH HOH . H 4 HOH A 4 504 111 HOH HOH . H 4 HOH A 5 505 94 HOH HOH . H 4 HOH A 6 506 126 HOH HOH . H 4 HOH A 7 507 22 HOH HOH . H 4 HOH A 8 508 26 HOH HOH . H 4 HOH A 9 509 3 HOH HOH . H 4 HOH A 10 510 36 HOH HOH . H 4 HOH A 11 511 40 HOH HOH . H 4 HOH A 12 512 51 HOH HOH . H 4 HOH A 13 513 43 HOH HOH . H 4 HOH A 14 514 123 HOH HOH . H 4 HOH A 15 515 61 HOH HOH . H 4 HOH A 16 516 8 HOH HOH . H 4 HOH A 17 517 83 HOH HOH . H 4 HOH A 18 518 89 HOH HOH . H 4 HOH A 19 519 106 HOH HOH . H 4 HOH A 20 520 16 HOH HOH . H 4 HOH A 21 521 21 HOH HOH . H 4 HOH A 22 522 96 HOH HOH . H 4 HOH A 23 523 7 HOH HOH . H 4 HOH A 24 524 74 HOH HOH . H 4 HOH A 25 525 55 HOH HOH . H 4 HOH A 26 526 77 HOH HOH . H 4 HOH A 27 527 82 HOH HOH . H 4 HOH A 28 528 44 HOH HOH . H 4 HOH A 29 529 73 HOH HOH . H 4 HOH A 30 530 1 HOH HOH . H 4 HOH A 31 531 38 HOH HOH . H 4 HOH A 32 532 5 HOH HOH . H 4 HOH A 33 533 24 HOH HOH . H 4 HOH A 34 534 48 HOH HOH . H 4 HOH A 35 535 6 HOH HOH . H 4 HOH A 36 536 10 HOH HOH . H 4 HOH A 37 537 93 HOH HOH . H 4 HOH A 38 538 17 HOH HOH . H 4 HOH A 39 539 41 HOH HOH . H 4 HOH A 40 540 130 HOH HOH . H 4 HOH A 41 541 29 HOH HOH . H 4 HOH A 42 542 105 HOH HOH . H 4 HOH A 43 543 140 HOH HOH . H 4 HOH A 44 544 31 HOH HOH . H 4 HOH A 45 545 60 HOH HOH . H 4 HOH A 46 546 52 HOH HOH . H 4 HOH A 47 547 57 HOH HOH . H 4 HOH A 48 548 81 HOH HOH . H 4 HOH A 49 549 121 HOH HOH . H 4 HOH A 50 550 135 HOH HOH . H 4 HOH A 51 551 128 HOH HOH . H 4 HOH A 52 552 35 HOH HOH . H 4 HOH A 53 553 71 HOH HOH . H 4 HOH A 54 554 131 HOH HOH . H 4 HOH A 55 555 95 HOH HOH . H 4 HOH A 56 556 125 HOH HOH . H 4 HOH A 57 557 2 HOH HOH . H 4 HOH A 58 558 53 HOH HOH . H 4 HOH A 59 559 88 HOH HOH . H 4 HOH A 60 560 50 HOH HOH . H 4 HOH A 61 561 59 HOH HOH . H 4 HOH A 62 562 45 HOH HOH . H 4 HOH A 63 563 87 HOH HOH . H 4 HOH A 64 564 14 HOH HOH . H 4 HOH A 65 565 13 HOH HOH . H 4 HOH A 66 566 68 HOH HOH . H 4 HOH A 67 567 20 HOH HOH . H 4 HOH A 68 568 9 HOH HOH . H 4 HOH A 69 569 70 HOH HOH . H 4 HOH A 70 570 75 HOH HOH . H 4 HOH A 71 571 30 HOH HOH . H 4 HOH A 72 572 42 HOH HOH . H 4 HOH A 73 573 28 HOH HOH . H 4 HOH A 74 574 72 HOH HOH . H 4 HOH A 75 575 15 HOH HOH . H 4 HOH A 76 576 84 HOH HOH . H 4 HOH A 77 577 58 HOH HOH . H 4 HOH A 78 578 101 HOH HOH . H 4 HOH A 79 579 25 HOH HOH . H 4 HOH A 80 580 103 HOH HOH . H 4 HOH A 81 581 56 HOH HOH . H 4 HOH A 82 582 54 HOH HOH . H 4 HOH A 83 583 18 HOH HOH . H 4 HOH A 84 584 108 HOH HOH . H 4 HOH A 85 585 19 HOH HOH . H 4 HOH A 86 586 127 HOH HOH . H 4 HOH A 87 587 115 HOH HOH . H 4 HOH A 88 588 4 HOH HOH . H 4 HOH A 89 589 120 HOH HOH . H 4 HOH A 90 590 85 HOH HOH . H 4 HOH A 91 591 11 HOH HOH . H 4 HOH A 92 592 62 HOH HOH . H 4 HOH A 93 593 91 HOH HOH . H 4 HOH A 94 594 124 HOH HOH . H 4 HOH A 95 595 117 HOH HOH . H 4 HOH A 96 596 46 HOH HOH . H 4 HOH A 97 597 34 HOH HOH . H 4 HOH A 98 598 110 HOH HOH . H 4 HOH A 99 599 63 HOH HOH . H 4 HOH A 100 600 90 HOH HOH . H 4 HOH A 101 601 64 HOH HOH . H 4 HOH A 102 602 66 HOH HOH . H 4 HOH A 103 603 49 HOH HOH . H 4 HOH A 104 604 104 HOH HOH . H 4 HOH A 105 605 67 HOH HOH . H 4 HOH A 106 606 141 HOH HOH . H 4 HOH A 107 607 132 HOH HOH . H 4 HOH A 108 608 23 HOH HOH . H 4 HOH A 109 609 100 HOH HOH . H 4 HOH A 110 610 32 HOH HOH . H 4 HOH A 111 611 97 HOH HOH . H 4 HOH A 112 612 102 HOH HOH . H 4 HOH A 113 613 37 HOH HOH . H 4 HOH A 114 614 118 HOH HOH . H 4 HOH A 115 615 99 HOH HOH . H 4 HOH A 116 616 119 HOH HOH . H 4 HOH A 117 617 116 HOH HOH . H 4 HOH A 118 618 27 HOH HOH . H 4 HOH A 119 619 65 HOH HOH . H 4 HOH A 120 620 143 HOH HOH . H 4 HOH A 121 621 107 HOH HOH . H 4 HOH A 122 622 33 HOH HOH . H 4 HOH A 123 623 129 HOH HOH . H 4 HOH A 124 624 114 HOH HOH . H 4 HOH A 125 625 98 HOH HOH . H 4 HOH A 126 626 79 HOH HOH . H 4 HOH A 127 627 92 HOH HOH . H 4 HOH A 128 628 146 HOH HOH . H 4 HOH A 129 629 137 HOH HOH . H 4 HOH A 130 630 142 HOH HOH . H 4 HOH A 131 631 122 HOH HOH . H 4 HOH A 132 632 113 HOH HOH . H 4 HOH A 133 633 144 HOH HOH . H 4 HOH A 134 634 145 HOH HOH . H 4 HOH A 135 635 80 HOH HOH . H 4 HOH A 136 636 86 HOH HOH . H 4 HOH A 137 637 138 HOH HOH . H 4 HOH A 138 638 109 HOH HOH . H 4 HOH A 139 639 39 HOH HOH . H 4 HOH A 140 640 134 HOH HOH . H 4 HOH A 141 641 136 HOH HOH . H 4 HOH A 142 642 133 HOH HOH . H 4 HOH A 143 643 69 HOH HOH . H 4 HOH A 144 644 47 HOH HOH . H 4 HOH A 145 645 139 HOH HOH . H 4 HOH A 146 646 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . G 3 -18.541 22.295 -4.874 1 74.89 ? N1 EPE 406 A 1 HETATM 2 C C2 EPE . . . G 3 -17.408 22.55 -5.747 1 71.89 ? C2 EPE 406 A 1 HETATM 3 C C3 EPE . . . G 3 -16.714 21.208 -6.025 1 70.41 ? C3 EPE 406 A 1 HETATM 4 N N4 EPE . . . G 3 -17.684 20.368 -6.788 1 67.49 ? N4 EPE 406 A 1 HETATM 5 C C5 EPE . . . G 3 -18.939 20.235 -6.045 1 69.71 ? C5 EPE 406 A 1 HETATM 6 C C6 EPE . . . G 3 -19.544 21.581 -5.669 1 72.19 ? C6 EPE 406 A 1 HETATM 7 C C7 EPE . . . G 3 -17.213 19.041 -7.229 1 59.49 ? C7 EPE 406 A 1 HETATM 8 C C8 EPE . . . G 3 -16.67 18.226 -6.061 1 52.6 ? C8 EPE 406 A 1 HETATM 9 O O8 EPE . . . G 3 -15.184 18.259 -6.133 1 52.66 ? O8 EPE 406 A 1 HETATM 10 C C9 EPE . . . G 3 -19.18 23.555 -4.385 1 77.3 ? C9 EPE 406 A 1 HETATM 11 C C10 EPE . . . G 3 -19.617 23.372 -2.938 1 81.48 ? C10 EPE 406 A 1 HETATM 12 S S EPE . . . G 3 -21.421 23.067 -3.021 1 88.42 ? S EPE 406 A 1 HETATM 13 O O1S EPE . . . G 3 -22.106 24.03 -4.009 1 89.22 ? O1S EPE 406 A 1 HETATM 14 O O2S EPE . . . G 3 -21.729 21.613 -3.415 1 83.43 ? O2S EPE 406 A 1 HETATM 15 O O3S EPE . . . G 3 -21.954 23.326 -1.609 1 85.16 ? O3S EPE 406 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #