data_7D2B
#
_model_server_result.job_id            OsTU9haW9t-yY1WtTnZqSg 
_model_server_result.datetime_utc      '2024-11-15 13:29:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d2b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":400}' 
#
_entry.id    7D2B 
#
_exptl.entry_id    7D2B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7D2B 
_cell.length_a            55.066 
_cell.length_b            71.26 
_cell.length_c            80.119 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D2B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 72 A CYS 96 1_555 A SG CYS 85 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf2 A SG CYS 96 A CYS 120 1_555 A SG CYS 194 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc1 A OD2 ASP 120 A ASP 144 1_555 B NI NI . A NI 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc2 A OE2 GLU 160 A GLU 184 1_555 B NI NI . A NI 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc3 A NE2 HIS 298 A HIS 322 1_555 B NI NI . A NI 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc4 B NI NI . A NI 400 1_555 C O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7D2B 
_atom_sites.fract_transf_matrix[1][1]    0.01816 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014033 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012481 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 400 400 NI NI . 
C 3 HOH A 1 501 48 HOH HOH . 
C 3 HOH A 2 502 178 HOH HOH . 
C 3 HOH A 3 503 162 HOH HOH . 
C 3 HOH A 4 504 57 HOH HOH . 
C 3 HOH A 5 505 159 HOH HOH . 
C 3 HOH A 6 506 53 HOH HOH . 
C 3 HOH A 7 507 50 HOH HOH . 
C 3 HOH A 8 508 13 HOH HOH . 
C 3 HOH A 9 509 102 HOH HOH . 
C 3 HOH A 10 510 110 HOH HOH . 
C 3 HOH A 11 511 99 HOH HOH . 
C 3 HOH A 12 512 17 HOH HOH . 
C 3 HOH A 13 513 12 HOH HOH . 
C 3 HOH A 14 514 139 HOH HOH . 
C 3 HOH A 15 515 91 HOH HOH . 
C 3 HOH A 16 516 188 HOH HOH . 
C 3 HOH A 17 517 154 HOH HOH . 
C 3 HOH A 18 518 119 HOH HOH . 
C 3 HOH A 19 519 224 HOH HOH . 
C 3 HOH A 20 520 229 HOH HOH . 
C 3 HOH A 21 521 175 HOH HOH . 
C 3 HOH A 22 522 104 HOH HOH . 
C 3 HOH A 23 523 29 HOH HOH . 
C 3 HOH A 24 524 23 HOH HOH . 
C 3 HOH A 25 525 108 HOH HOH . 
C 3 HOH A 26 526 80 HOH HOH . 
C 3 HOH A 27 527 148 HOH HOH . 
C 3 HOH A 28 528 164 HOH HOH . 
C 3 HOH A 29 529 61 HOH HOH . 
C 3 HOH A 30 530 207 HOH HOH . 
C 3 HOH A 31 531 40 HOH HOH . 
C 3 HOH A 32 532 11 HOH HOH . 
C 3 HOH A 33 533 114 HOH HOH . 
C 3 HOH A 34 534 43 HOH HOH . 
C 3 HOH A 35 535 9 HOH HOH . 
C 3 HOH A 36 536 155 HOH HOH . 
C 3 HOH A 37 537 39 HOH HOH . 
C 3 HOH A 38 538 214 HOH HOH . 
C 3 HOH A 39 539 72 HOH HOH . 
C 3 HOH A 40 540 7 HOH HOH . 
C 3 HOH A 41 541 97 HOH HOH . 
C 3 HOH A 42 542 49 HOH HOH . 
C 3 HOH A 43 543 161 HOH HOH . 
C 3 HOH A 44 544 46 HOH HOH . 
C 3 HOH A 45 545 150 HOH HOH . 
C 3 HOH A 46 546 58 HOH HOH . 
C 3 HOH A 47 547 131 HOH HOH . 
C 3 HOH A 48 548 60 HOH HOH . 
C 3 HOH A 49 549 4 HOH HOH . 
C 3 HOH A 50 550 172 HOH HOH . 
C 3 HOH A 51 551 87 HOH HOH . 
C 3 HOH A 52 552 240 HOH HOH . 
C 3 HOH A 53 553 52 HOH HOH . 
C 3 HOH A 54 554 144 HOH HOH . 
C 3 HOH A 55 555 184 HOH HOH . 
C 3 HOH A 56 556 220 HOH HOH . 
C 3 HOH A 57 557 16 HOH HOH . 
C 3 HOH A 58 558 77 HOH HOH . 
C 3 HOH A 59 559 158 HOH HOH . 
C 3 HOH A 60 560 18 HOH HOH . 
C 3 HOH A 61 561 27 HOH HOH . 
C 3 HOH A 62 562 153 HOH HOH . 
C 3 HOH A 63 563 66 HOH HOH . 
C 3 HOH A 64 564 89 HOH HOH . 
C 3 HOH A 65 565 106 HOH HOH . 
C 3 HOH A 66 566 51 HOH HOH . 
C 3 HOH A 67 567 54 HOH HOH . 
C 3 HOH A 68 568 136 HOH HOH . 
C 3 HOH A 69 569 98 HOH HOH . 
C 3 HOH A 70 570 74 HOH HOH . 
C 3 HOH A 71 571 45 HOH HOH . 
C 3 HOH A 72 572 100 HOH HOH . 
C 3 HOH A 73 573 31 HOH HOH . 
C 3 HOH A 74 574 125 HOH HOH . 
C 3 HOH A 75 575 234 HOH HOH . 
C 3 HOH A 76 576 19 HOH HOH . 
C 3 HOH A 77 577 183 HOH HOH . 
C 3 HOH A 78 578 8 HOH HOH . 
C 3 HOH A 79 579 232 HOH HOH . 
C 3 HOH A 80 580 138 HOH HOH . 
C 3 HOH A 81 581 190 HOH HOH . 
C 3 HOH A 82 582 152 HOH HOH . 
C 3 HOH A 83 583 73 HOH HOH . 
C 3 HOH A 84 584 71 HOH HOH . 
C 3 HOH A 85 585 3 HOH HOH . 
C 3 HOH A 86 586 14 HOH HOH . 
C 3 HOH A 87 587 113 HOH HOH . 
C 3 HOH A 88 588 81 HOH HOH . 
C 3 HOH A 89 589 117 HOH HOH . 
C 3 HOH A 90 590 211 HOH HOH . 
C 3 HOH A 91 591 197 HOH HOH . 
C 3 HOH A 92 592 134 HOH HOH . 
C 3 HOH A 93 593 239 HOH HOH . 
C 3 HOH A 94 594 28 HOH HOH . 
C 3 HOH A 95 595 33 HOH HOH . 
C 3 HOH A 96 596 15 HOH HOH . 
C 3 HOH A 97 597 227 HOH HOH . 
C 3 HOH A 98 598 221 HOH HOH . 
C 3 HOH A 99 599 59 HOH HOH . 
C 3 HOH A 100 600 5 HOH HOH . 
C 3 HOH A 101 601 237 HOH HOH . 
C 3 HOH A 102 602 6 HOH HOH . 
C 3 HOH A 103 603 122 HOH HOH . 
C 3 HOH A 104 604 47 HOH HOH . 
C 3 HOH A 105 605 151 HOH HOH . 
C 3 HOH A 106 606 70 HOH HOH . 
C 3 HOH A 107 607 24 HOH HOH . 
C 3 HOH A 108 608 67 HOH HOH . 
C 3 HOH A 109 609 103 HOH HOH . 
C 3 HOH A 110 610 86 HOH HOH . 
C 3 HOH A 111 611 83 HOH HOH . 
C 3 HOH A 112 612 157 HOH HOH . 
C 3 HOH A 113 613 76 HOH HOH . 
C 3 HOH A 114 614 109 HOH HOH . 
C 3 HOH A 115 615 34 HOH HOH . 
C 3 HOH A 116 616 132 HOH HOH . 
C 3 HOH A 117 617 22 HOH HOH . 
C 3 HOH A 118 618 194 HOH HOH . 
C 3 HOH A 119 619 218 HOH HOH . 
C 3 HOH A 120 620 32 HOH HOH . 
C 3 HOH A 121 621 202 HOH HOH . 
C 3 HOH A 122 622 203 HOH HOH . 
C 3 HOH A 123 623 62 HOH HOH . 
C 3 HOH A 124 624 120 HOH HOH . 
C 3 HOH A 125 625 10 HOH HOH . 
C 3 HOH A 126 626 146 HOH HOH . 
C 3 HOH A 127 627 133 HOH HOH . 
C 3 HOH A 128 628 38 HOH HOH . 
C 3 HOH A 129 629 30 HOH HOH . 
C 3 HOH A 130 630 41 HOH HOH . 
C 3 HOH A 131 631 180 HOH HOH . 
C 3 HOH A 132 632 141 HOH HOH . 
C 3 HOH A 133 633 216 HOH HOH . 
C 3 HOH A 134 634 93 HOH HOH . 
C 3 HOH A 135 635 84 HOH HOH . 
C 3 HOH A 136 636 126 HOH HOH . 
C 3 HOH A 137 637 37 HOH HOH . 
C 3 HOH A 138 638 75 HOH HOH . 
C 3 HOH A 139 639 96 HOH HOH . 
C 3 HOH A 140 640 101 HOH HOH . 
C 3 HOH A 141 641 179 HOH HOH . 
C 3 HOH A 142 642 94 HOH HOH . 
C 3 HOH A 143 643 200 HOH HOH . 
C 3 HOH A 144 644 187 HOH HOH . 
C 3 HOH A 145 645 112 HOH HOH . 
C 3 HOH A 146 646 95 HOH HOH . 
C 3 HOH A 147 647 191 HOH HOH . 
C 3 HOH A 148 648 170 HOH HOH . 
C 3 HOH A 149 649 92 HOH HOH . 
C 3 HOH A 150 650 210 HOH HOH . 
C 3 HOH A 151 651 128 HOH HOH . 
C 3 HOH A 152 652 42 HOH HOH . 
C 3 HOH A 153 653 213 HOH HOH . 
C 3 HOH A 154 654 149 HOH HOH . 
C 3 HOH A 155 655 20 HOH HOH . 
C 3 HOH A 156 656 69 HOH HOH . 
C 3 HOH A 157 657 223 HOH HOH . 
C 3 HOH A 158 658 140 HOH HOH . 
C 3 HOH A 159 659 26 HOH HOH . 
C 3 HOH A 160 660 35 HOH HOH . 
C 3 HOH A 161 661 88 HOH HOH . 
C 3 HOH A 162 662 189 HOH HOH . 
C 3 HOH A 163 663 56 HOH HOH . 
C 3 HOH A 164 664 116 HOH HOH . 
C 3 HOH A 165 665 226 HOH HOH . 
C 3 HOH A 166 666 36 HOH HOH . 
C 3 HOH A 167 667 171 HOH HOH . 
C 3 HOH A 168 668 165 HOH HOH . 
C 3 HOH A 169 669 78 HOH HOH . 
C 3 HOH A 170 670 21 HOH HOH . 
C 3 HOH A 171 671 115 HOH HOH . 
C 3 HOH A 172 672 129 HOH HOH . 
C 3 HOH A 173 673 174 HOH HOH . 
C 3 HOH A 174 674 85 HOH HOH . 
C 3 HOH A 175 675 185 HOH HOH . 
C 3 HOH A 176 676 206 HOH HOH . 
C 3 HOH A 177 677 105 HOH HOH . 
C 3 HOH A 178 678 198 HOH HOH . 
C 3 HOH A 179 679 163 HOH HOH . 
C 3 HOH A 180 680 127 HOH HOH . 
C 3 HOH A 181 681 82 HOH HOH . 
C 3 HOH A 182 682 209 HOH HOH . 
C 3 HOH A 183 683 166 HOH HOH . 
C 3 HOH A 184 684 1 HOH HOH . 
C 3 HOH A 185 685 156 HOH HOH . 
C 3 HOH A 186 686 142 HOH HOH . 
C 3 HOH A 187 687 201 HOH HOH . 
C 3 HOH A 188 688 79 HOH HOH . 
C 3 HOH A 189 689 147 HOH HOH . 
C 3 HOH A 190 690 222 HOH HOH . 
C 3 HOH A 191 691 64 HOH HOH . 
C 3 HOH A 192 692 182 HOH HOH . 
C 3 HOH A 193 693 111 HOH HOH . 
C 3 HOH A 194 694 124 HOH HOH . 
C 3 HOH A 195 695 192 HOH HOH . 
C 3 HOH A 196 696 236 HOH HOH . 
C 3 HOH A 197 697 2 HOH HOH . 
C 3 HOH A 198 698 217 HOH HOH . 
C 3 HOH A 199 699 118 HOH HOH . 
C 3 HOH A 200 700 208 HOH HOH . 
C 3 HOH A 201 701 231 HOH HOH . 
C 3 HOH A 202 702 215 HOH HOH . 
C 3 HOH A 203 703 173 HOH HOH . 
C 3 HOH A 204 704 199 HOH HOH . 
C 3 HOH A 205 705 193 HOH HOH . 
C 3 HOH A 206 706 244 HOH HOH . 
C 3 HOH A 207 707 107 HOH HOH . 
C 3 HOH A 208 708 169 HOH HOH . 
C 3 HOH A 209 709 145 HOH HOH . 
C 3 HOH A 210 710 245 HOH HOH . 
C 3 HOH A 211 711 168 HOH HOH . 
C 3 HOH A 212 712 196 HOH HOH . 
C 3 HOH A 213 713 121 HOH HOH . 
C 3 HOH A 214 714 195 HOH HOH . 
C 3 HOH A 215 715 160 HOH HOH . 
C 3 HOH A 216 716 65 HOH HOH . 
C 3 HOH A 217 717 135 HOH HOH . 
C 3 HOH A 218 718 167 HOH HOH . 
C 3 HOH A 219 719 219 HOH HOH . 
C 3 HOH A 220 720 241 HOH HOH . 
C 3 HOH A 221 721 233 HOH HOH . 
C 3 HOH A 222 722 130 HOH HOH . 
C 3 HOH A 223 723 235 HOH HOH . 
C 3 HOH A 224 724 181 HOH HOH . 
C 3 HOH A 225 725 143 HOH HOH . 
C 3 HOH A 226 726 238 HOH HOH . 
C 3 HOH A 227 727 186 HOH HOH . 
C 3 HOH A 228 728 242 HOH HOH . 
C 3 HOH A 229 729 90 HOH HOH . 
C 3 HOH A 230 730 228 HOH HOH . 
C 3 HOH A 231 731 243 HOH HOH . 
C 3 HOH A 232 732 44 HOH HOH . 
C 3 HOH A 233 733 25 HOH HOH . 
C 3 HOH A 234 734 123 HOH HOH . 
C 3 HOH A 235 735 204 HOH HOH . 
C 3 HOH A 236 736 212 HOH HOH . 
C 3 HOH A 237 737 225 HOH HOH . 
C 3 HOH A 238 738 205 HOH HOH . 
C 3 HOH A 239 739 177 HOH HOH . 
C 3 HOH A 240 740 68 HOH HOH . 
C 3 HOH A 241 741 55 HOH HOH . 
C 3 HOH A 242 742 230 HOH HOH . 
C 3 HOH A 243 743 63 HOH HOH . 
C 3 HOH A 244 744 176 HOH HOH . 
C 3 HOH A 245 745 137 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -13.673 
_atom_site.Cartn_y               18.007 
_atom_site.Cartn_z               -3.958 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.61 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           400 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           539 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#