data_7D2V # _model_server_result.job_id QhspvpAaS83aaEK2YRq1gg _model_server_result.datetime_utc '2024-11-08 19:10:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 7D2V # _exptl.entry_id 7D2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7D2V _cell.length_a 102.72 _cell.length_b 102.72 _cell.length_c 170.591 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 155 1_555 A SG CYS 382 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf2 A SG CYS 240 A CYS 217 1_555 A SG CYS 405 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 292 A CYS 269 1_555 A SG CYS 342 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 176 n n C1 C2 GOL sing 177 n n C1 H11 GOL sing 178 n n C1 H12 GOL sing 179 n n O1 HO1 GOL sing 180 n n C2 O2 GOL sing 181 n n C2 C3 GOL sing 182 n n C2 H2 GOL sing 183 n n O2 HO2 GOL sing 184 n n C3 O3 GOL sing 185 n n C3 H31 GOL sing 186 n n C3 H32 GOL sing 187 n n O3 HO3 GOL sing 188 n n # _atom_sites.entry_id 7D2V _atom_sites.fract_transf_matrix[1][1] 0.009735 _atom_sites.fract_transf_matrix[1][2] 0.005621 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 501 501 IOD IOD . C 2 IOD A 1 502 502 IOD IOD . D 2 IOD A 1 503 503 IOD IOD . E 3 GOL A 1 504 504 GOL GOL . F 3 GOL A 1 505 505 GOL GOL . G 4 66F A 1 506 701 66F MOL . H 5 HOH A 1 601 1214 HOH HOH . H 5 HOH A 2 602 1088 HOH HOH . H 5 HOH A 3 603 1167 HOH HOH . H 5 HOH A 4 604 1051 HOH HOH . H 5 HOH A 5 605 1033 HOH HOH . H 5 HOH A 6 606 1008 HOH HOH . H 5 HOH A 7 607 1145 HOH HOH . H 5 HOH A 8 608 1123 HOH HOH . H 5 HOH A 9 609 1196 HOH HOH . H 5 HOH A 10 610 1046 HOH HOH . H 5 HOH A 11 611 1171 HOH HOH . H 5 HOH A 12 612 1050 HOH HOH . H 5 HOH A 13 613 1127 HOH HOH . H 5 HOH A 14 614 1199 HOH HOH . H 5 HOH A 15 615 1012 HOH HOH . H 5 HOH A 16 616 1020 HOH HOH . H 5 HOH A 17 617 1063 HOH HOH . H 5 HOH A 18 618 1222 HOH HOH . H 5 HOH A 19 619 1111 HOH HOH . H 5 HOH A 20 620 1113 HOH HOH . H 5 HOH A 21 621 1021 HOH HOH . H 5 HOH A 22 622 1016 HOH HOH . H 5 HOH A 23 623 1101 HOH HOH . H 5 HOH A 24 624 1080 HOH HOH . H 5 HOH A 25 625 1027 HOH HOH . H 5 HOH A 26 626 1029 HOH HOH . H 5 HOH A 27 627 1010 HOH HOH . H 5 HOH A 28 628 1085 HOH HOH . H 5 HOH A 29 629 1019 HOH HOH . H 5 HOH A 30 630 1092 HOH HOH . H 5 HOH A 31 631 1144 HOH HOH . H 5 HOH A 32 632 1141 HOH HOH . H 5 HOH A 33 633 1119 HOH HOH . H 5 HOH A 34 634 1118 HOH HOH . H 5 HOH A 35 635 1065 HOH HOH . H 5 HOH A 36 636 1138 HOH HOH . H 5 HOH A 37 637 1041 HOH HOH . H 5 HOH A 38 638 1011 HOH HOH . H 5 HOH A 39 639 1110 HOH HOH . H 5 HOH A 40 640 1073 HOH HOH . H 5 HOH A 41 641 1003 HOH HOH . H 5 HOH A 42 642 1193 HOH HOH . H 5 HOH A 43 643 1066 HOH HOH . H 5 HOH A 44 644 1071 HOH HOH . H 5 HOH A 45 645 1143 HOH HOH . H 5 HOH A 46 646 1023 HOH HOH . H 5 HOH A 47 647 1072 HOH HOH . H 5 HOH A 48 648 1052 HOH HOH . H 5 HOH A 49 649 1084 HOH HOH . H 5 HOH A 50 650 1095 HOH HOH . H 5 HOH A 51 651 1086 HOH HOH . H 5 HOH A 52 652 1081 HOH HOH . H 5 HOH A 53 653 1018 HOH HOH . H 5 HOH A 54 654 1042 HOH HOH . H 5 HOH A 55 655 1122 HOH HOH . H 5 HOH A 56 656 1079 HOH HOH . H 5 HOH A 57 657 1137 HOH HOH . H 5 HOH A 58 658 1058 HOH HOH . H 5 HOH A 59 659 1035 HOH HOH . H 5 HOH A 60 660 1017 HOH HOH . H 5 HOH A 61 661 1014 HOH HOH . H 5 HOH A 62 662 1100 HOH HOH . H 5 HOH A 63 663 1159 HOH HOH . H 5 HOH A 64 664 1114 HOH HOH . H 5 HOH A 65 665 1043 HOH HOH . H 5 HOH A 66 666 1009 HOH HOH . H 5 HOH A 67 667 1161 HOH HOH . H 5 HOH A 68 668 1207 HOH HOH . H 5 HOH A 69 669 1192 HOH HOH . H 5 HOH A 70 670 1039 HOH HOH . H 5 HOH A 71 671 1004 HOH HOH . H 5 HOH A 72 672 1040 HOH HOH . H 5 HOH A 73 673 1054 HOH HOH . H 5 HOH A 74 674 1060 HOH HOH . H 5 HOH A 75 675 1163 HOH HOH . H 5 HOH A 76 676 1037 HOH HOH . H 5 HOH A 77 677 1048 HOH HOH . H 5 HOH A 78 678 1154 HOH HOH . H 5 HOH A 79 679 1087 HOH HOH . H 5 HOH A 80 680 1032 HOH HOH . H 5 HOH A 81 681 1013 HOH HOH . H 5 HOH A 82 682 1121 HOH HOH . H 5 HOH A 83 683 1112 HOH HOH . H 5 HOH A 84 684 1187 HOH HOH . H 5 HOH A 85 685 1074 HOH HOH . H 5 HOH A 86 686 1132 HOH HOH . H 5 HOH A 87 687 1025 HOH HOH . H 5 HOH A 88 688 1158 HOH HOH . H 5 HOH A 89 689 1098 HOH HOH . H 5 HOH A 90 690 1202 HOH HOH . H 5 HOH A 91 691 1228 HOH HOH . H 5 HOH A 92 692 1055 HOH HOH . H 5 HOH A 93 693 1049 HOH HOH . H 5 HOH A 94 694 1129 HOH HOH . H 5 HOH A 95 695 1007 HOH HOH . H 5 HOH A 96 696 1128 HOH HOH . H 5 HOH A 97 697 1147 HOH HOH . H 5 HOH A 98 698 1036 HOH HOH . H 5 HOH A 99 699 1181 HOH HOH . H 5 HOH A 100 700 1078 HOH HOH . H 5 HOH A 101 701 1162 HOH HOH . H 5 HOH A 102 702 1062 HOH HOH . H 5 HOH A 103 703 1103 HOH HOH . H 5 HOH A 104 704 1172 HOH HOH . H 5 HOH A 105 705 1022 HOH HOH . H 5 HOH A 106 706 1001 HOH HOH . H 5 HOH A 107 707 1117 HOH HOH . H 5 HOH A 108 708 1038 HOH HOH . H 5 HOH A 109 709 1194 HOH HOH . H 5 HOH A 110 710 1212 HOH HOH . H 5 HOH A 111 711 1090 HOH HOH . H 5 HOH A 112 712 1168 HOH HOH . H 5 HOH A 113 713 1198 HOH HOH . H 5 HOH A 114 714 1002 HOH HOH . H 5 HOH A 115 715 1164 HOH HOH . H 5 HOH A 116 716 1061 HOH HOH . H 5 HOH A 117 717 1231 HOH HOH . H 5 HOH A 118 718 1045 HOH HOH . H 5 HOH A 119 719 1102 HOH HOH . H 5 HOH A 120 720 1026 HOH HOH . H 5 HOH A 121 721 1083 HOH HOH . H 5 HOH A 122 722 1220 HOH HOH . H 5 HOH A 123 723 1204 HOH HOH . H 5 HOH A 124 724 1195 HOH HOH . H 5 HOH A 125 725 1134 HOH HOH . H 5 HOH A 126 726 1064 HOH HOH . H 5 HOH A 127 727 1148 HOH HOH . H 5 HOH A 128 728 1097 HOH HOH . H 5 HOH A 129 729 1182 HOH HOH . H 5 HOH A 130 730 1131 HOH HOH . H 5 HOH A 131 731 1089 HOH HOH . H 5 HOH A 132 732 1006 HOH HOH . H 5 HOH A 133 733 1069 HOH HOH . H 5 HOH A 134 734 1213 HOH HOH . H 5 HOH A 135 735 1107 HOH HOH . H 5 HOH A 136 736 1091 HOH HOH . H 5 HOH A 137 737 1151 HOH HOH . H 5 HOH A 138 738 1070 HOH HOH . H 5 HOH A 139 739 1209 HOH HOH . H 5 HOH A 140 740 1015 HOH HOH . H 5 HOH A 141 741 1152 HOH HOH . H 5 HOH A 142 742 1215 HOH HOH . H 5 HOH A 143 743 1217 HOH HOH . H 5 HOH A 144 744 1059 HOH HOH . H 5 HOH A 145 745 1223 HOH HOH . H 5 HOH A 146 746 1067 HOH HOH . H 5 HOH A 147 747 1076 HOH HOH . H 5 HOH A 148 748 1057 HOH HOH . H 5 HOH A 149 749 1166 HOH HOH . H 5 HOH A 150 750 1173 HOH HOH . H 5 HOH A 151 751 1174 HOH HOH . H 5 HOH A 152 752 1024 HOH HOH . H 5 HOH A 153 753 1188 HOH HOH . H 5 HOH A 154 754 1106 HOH HOH . H 5 HOH A 155 755 1165 HOH HOH . H 5 HOH A 156 756 1031 HOH HOH . H 5 HOH A 157 757 1096 HOH HOH . H 5 HOH A 158 758 1130 HOH HOH . H 5 HOH A 159 759 1120 HOH HOH . H 5 HOH A 160 760 1126 HOH HOH . H 5 HOH A 161 761 1210 HOH HOH . H 5 HOH A 162 762 1030 HOH HOH . H 5 HOH A 163 763 1190 HOH HOH . H 5 HOH A 164 764 1150 HOH HOH . H 5 HOH A 165 765 1082 HOH HOH . H 5 HOH A 166 766 1175 HOH HOH . H 5 HOH A 167 767 1125 HOH HOH . H 5 HOH A 168 768 1140 HOH HOH . H 5 HOH A 169 769 1221 HOH HOH . H 5 HOH A 170 770 1142 HOH HOH . H 5 HOH A 171 771 1218 HOH HOH . H 5 HOH A 172 772 1047 HOH HOH . H 5 HOH A 173 773 1053 HOH HOH . H 5 HOH A 174 774 1229 HOH HOH . H 5 HOH A 175 775 1044 HOH HOH . H 5 HOH A 176 776 1005 HOH HOH . H 5 HOH A 177 777 1153 HOH HOH . H 5 HOH A 178 778 1133 HOH HOH . H 5 HOH A 179 779 1211 HOH HOH . H 5 HOH A 180 780 1191 HOH HOH . H 5 HOH A 181 781 1183 HOH HOH . H 5 HOH A 182 782 1203 HOH HOH . H 5 HOH A 183 783 1230 HOH HOH . H 5 HOH A 184 784 1135 HOH HOH . H 5 HOH A 185 785 1075 HOH HOH . H 5 HOH A 186 786 1227 HOH HOH . H 5 HOH A 187 787 1056 HOH HOH . H 5 HOH A 188 788 1124 HOH HOH . H 5 HOH A 189 789 1105 HOH HOH . H 5 HOH A 190 790 1170 HOH HOH . H 5 HOH A 191 791 1028 HOH HOH . H 5 HOH A 192 792 1115 HOH HOH . H 5 HOH A 193 793 1169 HOH HOH . H 5 HOH A 194 794 1068 HOH HOH . H 5 HOH A 195 795 1104 HOH HOH . H 5 HOH A 196 796 1208 HOH HOH . H 5 HOH A 197 797 1186 HOH HOH . H 5 HOH A 198 798 1219 HOH HOH . H 5 HOH A 199 799 1205 HOH HOH . H 5 HOH A 200 800 1176 HOH HOH . H 5 HOH A 201 801 1179 HOH HOH . H 5 HOH A 202 802 1156 HOH HOH . H 5 HOH A 203 803 1116 HOH HOH . H 5 HOH A 204 804 1226 HOH HOH . H 5 HOH A 205 805 1160 HOH HOH . H 5 HOH A 206 806 1108 HOH HOH . H 5 HOH A 207 807 1093 HOH HOH . H 5 HOH A 208 808 1224 HOH HOH . H 5 HOH A 209 809 1189 HOH HOH . H 5 HOH A 210 810 1146 HOH HOH . H 5 HOH A 211 811 1200 HOH HOH . H 5 HOH A 212 812 1034 HOH HOH . H 5 HOH A 213 813 1136 HOH HOH . H 5 HOH A 214 814 1157 HOH HOH . H 5 HOH A 215 815 1216 HOH HOH . H 5 HOH A 216 816 1201 HOH HOH . H 5 HOH A 217 817 1206 HOH HOH . H 5 HOH A 218 818 1109 HOH HOH . H 5 HOH A 219 819 1185 HOH HOH . H 5 HOH A 220 820 1099 HOH HOH . H 5 HOH A 221 821 1178 HOH HOH . H 5 HOH A 222 822 1177 HOH HOH . H 5 HOH A 223 823 1149 HOH HOH . H 5 HOH A 224 824 1225 HOH HOH . H 5 HOH A 225 825 1139 HOH HOH . H 5 HOH A 226 826 1184 HOH HOH . H 5 HOH A 227 827 1094 HOH HOH . H 5 HOH A 228 828 1155 HOH HOH . H 5 HOH A 229 829 1077 HOH HOH . H 5 HOH A 230 830 1197 HOH HOH . H 5 HOH A 231 831 1180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -11.25 48.635 3.172 1 43.07 ? C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . F 3 -10.959 49.809 3.93 1 37.91 ? O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . F 3 -10.975 47.354 3.946 1 42.03 ? C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . F 3 -11.92 46.361 3.551 1 49.96 ? O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . F 3 -9.55 46.869 3.658 1 45.78 ? C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . F 3 -9.44 45.5 3.243 1 43.07 ? O3 GOL 505 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #