data_7D2X # _model_server_result.job_id SYAqQfTtwBfnEyRCa9HJiQ _model_server_result.datetime_utc '2024-11-08 20:52:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 7D2X # _exptl.entry_id 7D2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.372 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-[(4R)-2-azanyl-4-prop-1-ynyl-5,6-dihydro-1,3-oxazin-4-yl]-4-fluoranyl-phenyl]-5-cyano-pyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7D2X _cell.length_a 101.719 _cell.length_b 101.719 _cell.length_c 169.35 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 155 1_555 A SG CYS 382 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 240 A CYS 217 1_555 A SG CYS 405 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 292 A CYS 269 1_555 A SG CYS 342 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C20 H16 F N5 O2' _chem_comp.formula_weight 377.372 _chem_comp.id GTU _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-[(4R)-2-azanyl-4-prop-1-ynyl-5,6-dihydro-1,3-oxazin-4-yl]-4-fluoranyl-phenyl]-5-cyano-pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C19 GTU sing 142 n n C C1 GTU sing 143 n n C4 C5 GTU sing 144 n n C4 C3 GTU sing 145 n n C1 C2 GTU trip 146 n n C5 O GTU sing 147 n n C19 C18 GTU doub 148 n y C19 C7 GTU sing 149 n y C2 C3 GTU sing 150 n n C18 C17 GTU sing 151 n y C3 C7 GTU sing 152 n n C3 N1 GTU sing 153 n n C7 C8 GTU doub 154 n y O C6 GTU sing 155 n n C17 C9 GTU doub 156 n y N1 C6 GTU doub 157 n n C6 N GTU sing 158 n n C8 C9 GTU sing 159 n y C9 N2 GTU sing 160 n n O1 C10 GTU doub 161 n n N2 C10 GTU sing 162 n n C10 C11 GTU sing 163 n n C11 N3 GTU doub 164 n y C11 C15 GTU sing 165 n y N3 C12 GTU sing 166 n y C15 C14 GTU doub 167 n y C12 C13 GTU doub 168 n y C14 C13 GTU sing 169 n y C13 C16 GTU sing 170 n n C16 N4 GTU trip 171 n n C4 H1 GTU sing 172 n n C4 H2 GTU sing 173 n n C5 H3 GTU sing 174 n n C5 H4 GTU sing 175 n n N2 H5 GTU sing 176 n n C8 H6 GTU sing 177 n n C12 H7 GTU sing 178 n n C14 H8 GTU sing 179 n n C15 H9 GTU sing 180 n n N H10 GTU sing 181 n n N H11 GTU sing 182 n n C H12 GTU sing 183 n n C H13 GTU sing 184 n n C H14 GTU sing 185 n n C18 H15 GTU sing 186 n n C17 H16 GTU sing 187 n n # _atom_sites.entry_id 7D2X _atom_sites.fract_transf_matrix[1][1] 0.009831 _atom_sites.fract_transf_matrix[1][2] 0.005676 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 501 501 IOD IOD . C 2 IOD A 1 502 502 IOD IOD . D 3 GOL A 1 503 503 GOL GOL . E 3 GOL A 1 504 504 GOL GOL . F 4 GTU A 1 505 701 GTU MOL . G 5 HOH A 1 601 1112 HOH HOH . G 5 HOH A 2 602 1068 HOH HOH . G 5 HOH A 3 603 1081 HOH HOH . G 5 HOH A 4 604 1058 HOH HOH . G 5 HOH A 5 605 1074 HOH HOH . G 5 HOH A 6 606 1038 HOH HOH . G 5 HOH A 7 607 1013 HOH HOH . G 5 HOH A 8 608 1066 HOH HOH . G 5 HOH A 9 609 1043 HOH HOH . G 5 HOH A 10 610 1002 HOH HOH . G 5 HOH A 11 611 1016 HOH HOH . G 5 HOH A 12 612 1028 HOH HOH . G 5 HOH A 13 613 1037 HOH HOH . G 5 HOH A 14 614 1091 HOH HOH . G 5 HOH A 15 615 1009 HOH HOH . G 5 HOH A 16 616 1022 HOH HOH . G 5 HOH A 17 617 1007 HOH HOH . G 5 HOH A 18 618 1121 HOH HOH . G 5 HOH A 19 619 1027 HOH HOH . G 5 HOH A 20 620 1089 HOH HOH . G 5 HOH A 21 621 1143 HOH HOH . G 5 HOH A 22 622 1078 HOH HOH . G 5 HOH A 23 623 1031 HOH HOH . G 5 HOH A 24 624 1060 HOH HOH . G 5 HOH A 25 625 1094 HOH HOH . G 5 HOH A 26 626 1164 HOH HOH . G 5 HOH A 27 627 1023 HOH HOH . G 5 HOH A 28 628 1006 HOH HOH . G 5 HOH A 29 629 1111 HOH HOH . G 5 HOH A 30 630 1109 HOH HOH . G 5 HOH A 31 631 1133 HOH HOH . G 5 HOH A 32 632 1024 HOH HOH . G 5 HOH A 33 633 1138 HOH HOH . G 5 HOH A 34 634 1070 HOH HOH . G 5 HOH A 35 635 1035 HOH HOH . G 5 HOH A 36 636 1017 HOH HOH . G 5 HOH A 37 637 1001 HOH HOH . G 5 HOH A 38 638 1159 HOH HOH . G 5 HOH A 39 639 1030 HOH HOH . G 5 HOH A 40 640 1125 HOH HOH . G 5 HOH A 41 641 1110 HOH HOH . G 5 HOH A 42 642 1051 HOH HOH . G 5 HOH A 43 643 1139 HOH HOH . G 5 HOH A 44 644 1019 HOH HOH . G 5 HOH A 45 645 1018 HOH HOH . G 5 HOH A 46 646 1174 HOH HOH . G 5 HOH A 47 647 1015 HOH HOH . G 5 HOH A 48 648 1042 HOH HOH . G 5 HOH A 49 649 1054 HOH HOH . G 5 HOH A 50 650 1026 HOH HOH . G 5 HOH A 51 651 1010 HOH HOH . G 5 HOH A 52 652 1158 HOH HOH . G 5 HOH A 53 653 1173 HOH HOH . G 5 HOH A 54 654 1072 HOH HOH . G 5 HOH A 55 655 1047 HOH HOH . G 5 HOH A 56 656 1036 HOH HOH . G 5 HOH A 57 657 1153 HOH HOH . G 5 HOH A 58 658 1092 HOH HOH . G 5 HOH A 59 659 1108 HOH HOH . G 5 HOH A 60 660 1077 HOH HOH . G 5 HOH A 61 661 1064 HOH HOH . G 5 HOH A 62 662 1049 HOH HOH . G 5 HOH A 63 663 1014 HOH HOH . G 5 HOH A 64 664 1033 HOH HOH . G 5 HOH A 65 665 1062 HOH HOH . G 5 HOH A 66 666 1057 HOH HOH . G 5 HOH A 67 667 1005 HOH HOH . G 5 HOH A 68 668 1115 HOH HOH . G 5 HOH A 69 669 1052 HOH HOH . G 5 HOH A 70 670 1008 HOH HOH . G 5 HOH A 71 671 1045 HOH HOH . G 5 HOH A 72 672 1025 HOH HOH . G 5 HOH A 73 673 1021 HOH HOH . G 5 HOH A 74 674 1083 HOH HOH . G 5 HOH A 75 675 1003 HOH HOH . G 5 HOH A 76 676 1095 HOH HOH . G 5 HOH A 77 677 1020 HOH HOH . G 5 HOH A 78 678 1107 HOH HOH . G 5 HOH A 79 679 1012 HOH HOH . G 5 HOH A 80 680 1082 HOH HOH . G 5 HOH A 81 681 1063 HOH HOH . G 5 HOH A 82 682 1040 HOH HOH . G 5 HOH A 83 683 1032 HOH HOH . G 5 HOH A 84 684 1046 HOH HOH . G 5 HOH A 85 685 1160 HOH HOH . G 5 HOH A 86 686 1105 HOH HOH . G 5 HOH A 87 687 1155 HOH HOH . G 5 HOH A 88 688 1136 HOH HOH . G 5 HOH A 89 689 1106 HOH HOH . G 5 HOH A 90 690 1080 HOH HOH . G 5 HOH A 91 691 1088 HOH HOH . G 5 HOH A 92 692 1103 HOH HOH . G 5 HOH A 93 693 1132 HOH HOH . G 5 HOH A 94 694 1150 HOH HOH . G 5 HOH A 95 695 1163 HOH HOH . G 5 HOH A 96 696 1075 HOH HOH . G 5 HOH A 97 697 1148 HOH HOH . G 5 HOH A 98 698 1059 HOH HOH . G 5 HOH A 99 699 1004 HOH HOH . G 5 HOH A 100 700 1093 HOH HOH . G 5 HOH A 101 701 1145 HOH HOH . G 5 HOH A 102 702 1044 HOH HOH . G 5 HOH A 103 703 1171 HOH HOH . G 5 HOH A 104 704 1084 HOH HOH . G 5 HOH A 105 705 1086 HOH HOH . G 5 HOH A 106 706 1175 HOH HOH . G 5 HOH A 107 707 1172 HOH HOH . G 5 HOH A 108 708 1118 HOH HOH . G 5 HOH A 109 709 1056 HOH HOH . G 5 HOH A 110 710 1113 HOH HOH . G 5 HOH A 111 711 1144 HOH HOH . G 5 HOH A 112 712 1149 HOH HOH . G 5 HOH A 113 713 1152 HOH HOH . G 5 HOH A 114 714 1114 HOH HOH . G 5 HOH A 115 715 1157 HOH HOH . G 5 HOH A 116 716 1034 HOH HOH . G 5 HOH A 117 717 1167 HOH HOH . G 5 HOH A 118 718 1099 HOH HOH . G 5 HOH A 119 719 1123 HOH HOH . G 5 HOH A 120 720 1096 HOH HOH . G 5 HOH A 121 721 1141 HOH HOH . G 5 HOH A 122 722 1067 HOH HOH . G 5 HOH A 123 723 1098 HOH HOH . G 5 HOH A 124 724 1120 HOH HOH . G 5 HOH A 125 725 1137 HOH HOH . G 5 HOH A 126 726 1087 HOH HOH . G 5 HOH A 127 727 1101 HOH HOH . G 5 HOH A 128 728 1169 HOH HOH . G 5 HOH A 129 729 1129 HOH HOH . G 5 HOH A 130 730 1073 HOH HOH . G 5 HOH A 131 731 1076 HOH HOH . G 5 HOH A 132 732 1104 HOH HOH . G 5 HOH A 133 733 1055 HOH HOH . G 5 HOH A 134 734 1161 HOH HOH . G 5 HOH A 135 735 1048 HOH HOH . G 5 HOH A 136 736 1069 HOH HOH . G 5 HOH A 137 737 1135 HOH HOH . G 5 HOH A 138 738 1050 HOH HOH . G 5 HOH A 139 739 1168 HOH HOH . G 5 HOH A 140 740 1065 HOH HOH . G 5 HOH A 141 741 1041 HOH HOH . G 5 HOH A 142 742 1116 HOH HOH . G 5 HOH A 143 743 1085 HOH HOH . G 5 HOH A 144 744 1029 HOH HOH . G 5 HOH A 145 745 1011 HOH HOH . G 5 HOH A 146 746 1117 HOH HOH . G 5 HOH A 147 747 1130 HOH HOH . G 5 HOH A 148 748 1097 HOH HOH . G 5 HOH A 149 749 1071 HOH HOH . G 5 HOH A 150 750 1061 HOH HOH . G 5 HOH A 151 751 1100 HOH HOH . G 5 HOH A 152 752 1090 HOH HOH . G 5 HOH A 153 753 1154 HOH HOH . G 5 HOH A 154 754 1165 HOH HOH . G 5 HOH A 155 755 1127 HOH HOH . G 5 HOH A 156 756 1122 HOH HOH . G 5 HOH A 157 757 1128 HOH HOH . G 5 HOH A 158 758 1151 HOH HOH . G 5 HOH A 159 759 1147 HOH HOH . G 5 HOH A 160 760 1102 HOH HOH . G 5 HOH A 161 761 1142 HOH HOH . G 5 HOH A 162 762 1166 HOH HOH . G 5 HOH A 163 763 1124 HOH HOH . G 5 HOH A 164 764 1126 HOH HOH . G 5 HOH A 165 765 1146 HOH HOH . G 5 HOH A 166 766 1053 HOH HOH . G 5 HOH A 167 767 1079 HOH HOH . G 5 HOH A 168 768 1134 HOH HOH . G 5 HOH A 169 769 1140 HOH HOH . G 5 HOH A 170 770 1119 HOH HOH . G 5 HOH A 171 771 1131 HOH HOH . G 5 HOH A 172 772 1039 HOH HOH . G 5 HOH A 173 773 1170 HOH HOH . G 5 HOH A 174 774 1162 HOH HOH . G 5 HOH A 175 775 1156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GTU . . . F 4 -17.334 -35.573 -9.221 1 29.64 ? C1 GTU 505 A 1 HETATM 2 C C2 GTU . . . F 4 -17.347 -36.705 -8.906 1 29.6 ? C2 GTU 505 A 1 HETATM 3 C C3 GTU . . . F 4 -17.381 -38.103 -8.487 1 30.46 ? C3 GTU 505 A 1 HETATM 4 C C4 GTU . . . F 4 -16.891 -38.974 -9.641 1 29.24 ? C4 GTU 505 A 1 HETATM 5 C C5 GTU . . . F 4 -16.718 -40.428 -9.197 1 29.49 ? C5 GTU 505 A 1 HETATM 6 C C6 GTU . . . F 4 -15.885 -39.315 -7.075 1 29.98 ? C6 GTU 505 A 1 HETATM 7 N N1 GTU . . . F 4 -16.472 -38.227 -7.353 1 29.6 ? N1 GTU 505 A 1 HETATM 8 N N2 GTU . . . F 4 -20.725 -40.021 -5.427 1 32.34 ? N2 GTU 505 A 1 HETATM 9 N N3 GTU . . . F 4 -22.544 -42.408 -3.373 1 31.1 ? N3 GTU 505 A 1 HETATM 10 O O1 GTU . . . F 4 -22.886 -40.706 -5.608 1 34.05 ? O1 GTU 505 A 1 HETATM 11 C C7 GTU . . . F 4 -18.828 -38.483 -8.142 1 31.32 ? C7 GTU 505 A 1 HETATM 12 C C8 GTU . . . F 4 -19.176 -39.095 -6.933 1 31.09 ? C8 GTU 505 A 1 HETATM 13 C C9 GTU . . . F 4 -20.499 -39.453 -6.643 1 32.17 ? C9 GTU 505 A 1 HETATM 14 C C10 GTU . . . F 4 -21.818 -40.674 -5.01 1 32.77 ? C10 GTU 505 A 1 HETATM 15 C C11 GTU . . . F 4 -21.689 -41.403 -3.711 1 31.81 ? C11 GTU 505 A 1 HETATM 16 C C12 GTU . . . F 4 -22.402 -43.057 -2.195 1 31.52 ? C12 GTU 505 A 1 HETATM 17 C C13 GTU . . . F 4 -21.369 -42.71 -1.31 1 31.65 ? C13 GTU 505 A 1 HETATM 18 C C14 GTU . . . F 4 -20.491 -41.682 -1.64 1 31.2 ? C14 GTU 505 A 1 HETATM 19 C C15 GTU . . . F 4 -20.66 -41.023 -2.848 1 31.37 ? C15 GTU 505 A 1 HETATM 20 F F GTU . . . F 4 -19.673 -37.654 -10.283 1 32.08 ? F GTU 505 A 1 HETATM 21 C C19 GTU . . . F 4 -19.941 -38.233 -9.108 1 30.85 ? C19 GTU 505 A 1 HETATM 22 N N GTU . . . F 4 -15.142 -39.409 -5.972 1 29.99 ? N GTU 505 A 1 HETATM 23 O O GTU . . . F 4 -16.019 -40.48 -7.943 1 30.38 ? O GTU 505 A 1 HETATM 24 C C GTU . . . F 4 -17.327 -34.175 -9.654 1 30.07 ? C GTU 505 A 1 HETATM 25 C C18 GTU . . . F 4 -21.255 -38.593 -8.797 1 30.57 ? C18 GTU 505 A 1 HETATM 26 C C17 GTU . . . F 4 -21.53 -39.195 -7.567 1 31.25 ? C17 GTU 505 A 1 HETATM 27 C C16 GTU . . . F 4 -21.228 -43.286 -0.166 1 32.57 ? C16 GTU 505 A 1 HETATM 28 N N4 GTU . . . F 4 -21.118 -43.786 0.879 1 32.5 ? N4 GTU 505 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #