data_7D31 # _model_server_result.job_id VXLP9kuMWEqUh4CCTq9eRg _model_server_result.datetime_utc '2024-12-26 20:39:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 7D31 # _exptl.entry_id 7D31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.2 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LEAD (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D31 _cell.length_a 40.017 _cell.length_b 40.017 _cell.length_c 99.896 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 DG 1 A DG 1 1_555 C PB PB . A PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc2 A O6 DG 2 A DG 2 1_555 C PB PB . A PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc3 A O6 DG 5 A DG 5 1_555 C PB PB . A PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 A O6 DG 6 A DG 6 1_555 C PB PB . A PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc5 A O6 DG 10 A DG 10 1_555 C PB PB . A PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc6 A O6 DG 11 A DG 11 1_555 C PB PB . A PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc7 A O6 DG 14 A DG 14 1_555 C PB PB . A PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc8 A O6 DG 15 A DG 15 1_555 C PB PB . A PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc9 B O6 DG 1 B DG 1 1_555 D PB PB . B PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc10 B O6 DG 2 B DG 2 1_555 D PB PB . B PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc11 B O6 DG 5 B DG 5 1_555 D PB PB . B PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 B O6 DG 6 B DG 6 1_555 D PB PB . B PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc13 B O6 DG 10 B DG 10 1_555 D PB PB . B PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc14 B O6 DG 11 B DG 11 1_555 D PB PB . B PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc15 B O6 DG 14 B DG 14 1_555 D PB PB . B PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc16 B O6 DG 15 B DG 15 1_555 D PB PB . B PB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? hydrog TYPE_6_PAIR hydrog1 A N1 DG 1 A DG 1 1_555 A O6 DG 6 A DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 DG 1 A DG 1 1_555 A N7 DG 6 A DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N7 DG 1 A DG 1 1_555 A N2 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A O6 DG 1 A DG 1 1_555 A N1 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N7 DG 2 A DG 2 1_555 A N2 DG 5 A DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A O6 DG 2 A DG 2 1_555 A N1 DG 5 A DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N1 DG 2 A DG 2 1_555 A O6 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A N2 DG 2 A DG 2 1_555 A N7 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_12_PAIR hydrog9 A N3 DT 3 A DT 3 1_555 B O4 DT 13 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_12_PAIR hydrog10 A O4 DT 3 A DT 3 1_555 B N3 DT 13 B DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_12_PAIR hydrog11 A N3 DT 4 A DT 4 1_555 B O4 DT 12 B DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_12_PAIR hydrog12 A O4 DT 4 A DT 4 1_555 B N3 DT 12 B DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N7 DG 5 A DG 5 1_555 A N2 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A O6 DG 5 A DG 5 1_555 A N1 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N1 DG 6 A DG 6 1_555 A O6 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A N2 DG 6 A DG 6 1_555 A N7 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N1 DG 10 A DG 10 1_555 A O6 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N2 DG 10 A DG 10 1_555 A N7 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 A N7 DG 11 A DG 11 1_555 A N2 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A O6 DG 11 A DG 11 1_555 A N1 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_12_PAIR hydrog21 A N3 DT 12 A DT 12 1_555 B O4 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_12_PAIR hydrog22 A O4 DT 12 A DT 12 1_555 B N3 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_12_PAIR hydrog23 A N3 DT 13 A DT 13 1_555 B O4 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_12_PAIR hydrog24 A O4 DT 13 A DT 13 1_555 B N3 DT 3 B DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog25 B N1 DG 1 B DG 1 1_555 B O6 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 B N2 DG 1 B DG 1 1_555 B N7 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog27 B N7 DG 1 B DG 1 1_555 B N2 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog28 B O6 DG 1 B DG 1 1_555 B N1 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog29 B N7 DG 2 B DG 2 1_555 B N2 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog30 B O6 DG 2 B DG 2 1_555 B N1 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog31 B N1 DG 2 B DG 2 1_555 B O6 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog32 B N2 DG 2 B DG 2 1_555 B N7 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog33 B N7 DG 5 B DG 5 1_555 B N2 DG 11 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog34 B O6 DG 5 B DG 5 1_555 B N1 DG 11 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog35 B N1 DG 6 B DG 6 1_555 B O6 DG 10 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog36 B N2 DG 6 B DG 6 1_555 B N7 DG 10 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog37 B N1 DG 10 B DG 10 1_555 B O6 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog38 B N2 DG 10 B DG 10 1_555 B N7 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog39 B N7 DG 11 B DG 11 1_555 B N2 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog40 B O6 DG 11 B DG 11 1_555 B N1 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Pb 2' _chem_comp.formula_weight 207.2 _chem_comp.id PB _chem_comp.mon_nstd_flag . _chem_comp.name 'LEAD (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7D31 _atom_sites.fract_transf_matrix[1][1] 0.024989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PB A 1 101 1 PB PB . D 2 PB B 1 101 2 PB PB . E 3 HOH A 1 201 12 HOH HOH . E 3 HOH A 2 202 48 HOH HOH . E 3 HOH A 3 203 27 HOH HOH . E 3 HOH A 4 204 34 HOH HOH . E 3 HOH A 5 205 33 HOH HOH . E 3 HOH A 6 206 36 HOH HOH . E 3 HOH A 7 207 53 HOH HOH . E 3 HOH A 8 208 44 HOH HOH . E 3 HOH A 9 209 47 HOH HOH . E 3 HOH A 10 210 38 HOH HOH . E 3 HOH A 11 211 55 HOH HOH . E 3 HOH A 12 212 2 HOH HOH . E 3 HOH A 13 213 25 HOH HOH . E 3 HOH A 14 214 5 HOH HOH . E 3 HOH A 15 215 13 HOH HOH . E 3 HOH A 16 216 8 HOH HOH . E 3 HOH A 17 217 14 HOH HOH . E 3 HOH A 18 218 28 HOH HOH . E 3 HOH A 19 219 18 HOH HOH . E 3 HOH A 20 220 32 HOH HOH . E 3 HOH A 21 221 9 HOH HOH . E 3 HOH A 22 222 4 HOH HOH . E 3 HOH A 23 223 54 HOH HOH . E 3 HOH A 24 224 6 HOH HOH . E 3 HOH A 25 225 46 HOH HOH . E 3 HOH A 26 226 30 HOH HOH . E 3 HOH A 27 227 52 HOH HOH . F 3 HOH B 1 201 50 HOH HOH . F 3 HOH B 2 202 16 HOH HOH . F 3 HOH B 3 203 23 HOH HOH . F 3 HOH B 4 204 39 HOH HOH . F 3 HOH B 5 205 26 HOH HOH . F 3 HOH B 6 206 56 HOH HOH . F 3 HOH B 7 207 45 HOH HOH . F 3 HOH B 8 208 15 HOH HOH . F 3 HOH B 9 209 22 HOH HOH . F 3 HOH B 10 210 35 HOH HOH . F 3 HOH B 11 211 11 HOH HOH . F 3 HOH B 12 212 3 HOH HOH . F 3 HOH B 13 213 40 HOH HOH . F 3 HOH B 14 214 1 HOH HOH . F 3 HOH B 15 215 20 HOH HOH . F 3 HOH B 16 216 10 HOH HOH . F 3 HOH B 17 217 21 HOH HOH . F 3 HOH B 18 218 7 HOH HOH . F 3 HOH B 19 219 29 HOH HOH . F 3 HOH B 20 220 17 HOH HOH . F 3 HOH B 21 221 42 HOH HOH . F 3 HOH B 22 222 24 HOH HOH . F 3 HOH B 23 223 37 HOH HOH . F 3 HOH B 24 224 19 HOH HOH . F 3 HOH B 25 225 43 HOH HOH . F 3 HOH B 26 226 49 HOH HOH . F 3 HOH B 27 227 51 HOH HOH . F 3 HOH B 28 228 41 HOH HOH . F 3 HOH B 29 229 57 HOH HOH . F 3 HOH B 30 230 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PB _atom_site.label_atom_id PB _atom_site.label_comp_id PB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 3.329 _atom_site.Cartn_y 18.678 _atom_site.Cartn_z 92.788 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PB _atom_site.auth_comp_id PB _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #