data_7D3A # _model_server_result.job_id OFpSwDJcLM7YuMuyqDwiYQ _model_server_result.datetime_utc '2025-02-20 16:34:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7D3A # _exptl.entry_id 7D3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D3A _cell.length_a 63.969 _cell.length_b 63.969 _cell.length_c 192.262 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 216 A CYS 216 1_555 A SG CYS 219 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? disulf ? disulf2 A SG CYS 219 A CYS 219 1_555 A SG CYS 233 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? disulf ? disulf3 A SG CYS 219 A CYS 219 1_555 A SG CYS 236 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C GLY 9 A GLY 9 1_555 A N MSE 10 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C MSE 10 A MSE 10 1_555 A N ARG 11 A ARG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C GLY 17 A GLY 17 1_555 A N MSE 18 A MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C MSE 18 A MSE 18 1_555 A N CYS 19 A CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 A C LEU 23 A LEU 23 1_555 A N MSE 24 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C MSE 24 A MSE 24 1_555 A N GLY 25 A GLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C GLU 28 A GLU 28 1_555 A N MSE 29 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 29 A MSE 29 1_555 A N GLY 30 A GLY 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale10 A C LYS 76 A LYS 76 1_555 A N MSE 77 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 A C MSE 77 A MSE 77 1_555 A N LEU 78 A LEU 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 A C ARG 108 A ARG 108 1_555 A N MSE 109 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C MSE 109 A MSE 109 1_555 A N ASP 110 A ASP 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale14 A C PHE 141 A PHE 141 1_555 A N MSE 142 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 A C MSE 142 A MSE 142 1_555 A N SER 143 A SER 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 A C GLY 158 A GLY 158 1_555 A N MSE 159 A MSE 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 A C MSE 159 A MSE 159 1_555 A N LEU 160 A LEU 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 A C PRO 164 A PRO 164 1_555 A N MSE 165 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 A C MSE 165 A MSE 165 1_555 A N TRP 166 A TRP 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale20 A C ASN 285 A ASN 285 1_555 A N MSE 286 A MSE 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale21 A C MSE 286 A MSE 286 1_555 A N GLN 287 A GLN 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 115 n n N1 C10 FMN doub 116 n n C2 O2 FMN doub 117 n n C2 N3 FMN sing 118 n n N3 C4 FMN sing 119 n n N3 HN3 FMN sing 120 n n C4 O4 FMN doub 121 n n C4 C4A FMN sing 122 n n C4A N5 FMN doub 123 n n C4A C10 FMN sing 124 n n N5 C5A FMN sing 125 n n C5A C6 FMN doub 126 n y C5A C9A FMN sing 127 n y C6 C7 FMN sing 128 n y C6 H6 FMN sing 129 n n C7 C7M FMN sing 130 n n C7 C8 FMN doub 131 n y C7M HM71 FMN sing 132 n n C7M HM72 FMN sing 133 n n C7M HM73 FMN sing 134 n n C8 C8M FMN sing 135 n n C8 C9 FMN sing 136 n y C8M HM81 FMN sing 137 n n C8M HM82 FMN sing 138 n n C8M HM83 FMN sing 139 n n C9 C9A FMN doub 140 n y C9 H9 FMN sing 141 n n C9A N10 FMN sing 142 n n N10 C10 FMN sing 143 n n N10 C1' FMN sing 144 n n C1' C2' FMN sing 145 n n C1' "H1'1" FMN sing 146 n n C1' "H1'2" FMN sing 147 n n C2' O2' FMN sing 148 n n C2' C3' FMN sing 149 n n C2' H2' FMN sing 150 n n O2' HO2' FMN sing 151 n n C3' O3' FMN sing 152 n n C3' C4' FMN sing 153 n n C3' H3' FMN sing 154 n n O3' HO3' FMN sing 155 n n C4' O4' FMN sing 156 n n C4' C5' FMN sing 157 n n C4' H4' FMN sing 158 n n O4' HO4' FMN sing 159 n n C5' O5' FMN sing 160 n n C5' "H5'1" FMN sing 161 n n C5' "H5'2" FMN sing 162 n n O5' P FMN sing 163 n n P O1P FMN doub 164 n n P O2P FMN sing 165 n n P O3P FMN sing 166 n n O2P HOP2 FMN sing 167 n n O3P HOP3 FMN sing 168 n n # _atom_sites.entry_id 7D3A _atom_sites.fract_transf_matrix[1][1] 0.015633 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 309 FMN FMN . C 3 AGI A 1 402 311 AGI AGI . D 4 HOH A 1 501 24 HOH HOH . D 4 HOH A 2 502 21 HOH HOH . D 4 HOH A 3 503 4 HOH HOH . D 4 HOH A 4 504 29 HOH HOH . D 4 HOH A 5 505 31 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 20 HOH HOH . D 4 HOH A 8 508 14 HOH HOH . D 4 HOH A 9 509 10 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 22 HOH HOH . D 4 HOH A 12 512 2 HOH HOH . D 4 HOH A 13 513 35 HOH HOH . D 4 HOH A 14 514 5 HOH HOH . D 4 HOH A 15 515 18 HOH HOH . D 4 HOH A 16 516 3 HOH HOH . D 4 HOH A 17 517 7 HOH HOH . D 4 HOH A 18 518 13 HOH HOH . D 4 HOH A 19 519 37 HOH HOH . D 4 HOH A 20 520 34 HOH HOH . D 4 HOH A 21 521 8 HOH HOH . D 4 HOH A 22 522 11 HOH HOH . D 4 HOH A 23 523 1 HOH HOH . D 4 HOH A 24 524 9 HOH HOH . D 4 HOH A 25 525 17 HOH HOH . D 4 HOH A 26 526 25 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 15 HOH HOH . D 4 HOH A 29 529 12 HOH HOH . D 4 HOH A 30 530 33 HOH HOH . D 4 HOH A 31 531 32 HOH HOH . D 4 HOH A 32 532 27 HOH HOH . D 4 HOH A 33 533 19 HOH HOH . D 4 HOH A 34 534 36 HOH HOH . D 4 HOH A 35 535 16 HOH HOH . D 4 HOH A 36 536 30 HOH HOH . D 4 HOH A 37 537 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 41.927 -29.269 -13.095 1 21.79 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 40.918 -30.07 -12.784 1 23.32 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 40.141 -30.203 -13.734 1 27.42 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 40.807 -30.661 -11.563 1 25.99 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 41.742 -30.393 -10.623 1 22.46 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 41.776 -30.846 -9.493 1 26.49 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 42.869 -29.511 -10.96 1 20.73 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 43.821 -29.215 -10.108 1 22.19 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 44.829 -28.386 -10.376 1 19.89 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 45.814 -28.083 -9.454 1 17.83 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 46.857 -27.219 -9.76 1 22.19 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 47.93 -26.91 -8.749 1 17.62 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 46.93 -26.628 -11.119 1 22.87 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 48.066 -25.71 -11.474 1 18.6 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 45.945 -26.947 -12.038 1 20.94 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 44.901 -27.789 -11.713 1 17.75 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 43.923 -28.121 -12.658 1 18.09 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 42.896 -28.951 -12.276 1 18.31 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 43.984 -27.493 -13.972 1 18.32 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 43.437 -26.06 -13.925 1 21.95 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 42.065 -26.002 -13.584 1 18.78 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 43.735 -25.318 -15.261 1 18.42 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 45.113 -25.195 -15.476 1 22.49 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 43.021 -23.947 -15.35 1 18.4 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 41.629 -24.078 -15.573 1 18.68 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 43.676 -23.079 -16.411 1 18.64 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 43.063 -21.843 -16.552 1 20.21 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 43.611 -20.522 -17.041 1 19.94 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 42.648 -19.544 -16.846 1 29.01 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 44.743 -20.249 -16.254 1 18.53 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 43.798 -20.788 -18.432 1 19.31 ? O3P FMN 401 A 1 HETATM 32 H HN3 FMN . . . B 2 39.963 -31.33 -11.349 1 31.18 ? HN3 FMN 401 A 1 HETATM 33 H H6 FMN . . . B 2 45.795 -28.511 -8.443 1 21.39 ? H6 FMN 401 A 1 HETATM 34 H HM71 FMN . . . B 2 48.422 -25.996 -8.969 1 21.14 ? HM71 FMN 401 A 1 HETATM 35 H HM72 FMN . . . B 2 48.643 -27.693 -8.756 1 21.14 ? HM72 FMN 401 A 1 HETATM 36 H HM73 FMN . . . B 2 47.513 -26.835 -7.776 1 21.14 ? HM73 FMN 401 A 1 HETATM 37 H HM81 FMN . . . B 2 48.364 -25.85 -12.484 1 22.33 ? HM81 FMN 401 A 1 HETATM 38 H HM82 FMN . . . B 2 48.914 -25.875 -10.858 1 22.33 ? HM82 FMN 401 A 1 HETATM 39 H HM83 FMN . . . B 2 47.745 -24.707 -11.35 1 22.33 ? HM83 FMN 401 A 1 HETATM 40 H H9 FMN . . . B 2 46.015 -26.487 -13.03 1 25.13 ? H9 FMN 401 A 1 HETATM 41 H "H1'1" FMN . . . B 2 45.012 -27.511 -14.376 1 21.98 ? "H1'1" FMN 401 A 1 HETATM 42 H "H1'2" FMN . . . B 2 43.412 -28.033 -14.741 1 21.98 ? "H1'2" FMN 401 A 1 HETATM 43 H H2' FMN . . . B 2 43.912 -25.478 -13.1 1 26.34 ? H2' FMN 401 A 1 HETATM 44 H HO2' FMN . . . B 2 41.512 -26.453 -14.241 1 22.53 ? HO2' FMN 401 A 1 HETATM 45 H H3' FMN . . . B 2 43.436 -25.97 -16.115 1 22.1 ? H3' FMN 401 A 1 HETATM 46 H HO3' FMN . . . B 2 45.561 -24.655 -14.802 1 26.99 ? HO3' FMN 401 A 1 HETATM 47 H H4' FMN . . . B 2 43.157 -23.428 -14.381 1 22.07 ? H4' FMN 401 A 1 HETATM 48 H HO4' FMN . . . B 2 41.418 -24.547 -16.398 1 22.41 ? HO4' FMN 401 A 1 HETATM 49 H "H5'1" FMN . . . B 2 44.726 -22.929 -16.151 1 22.37 ? "H5'1" FMN 401 A 1 HETATM 50 H "H5'2" FMN . . . B 2 43.647 -23.603 -17.369 1 22.37 ? "H5'2" FMN 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #