data_7D3B
#
_model_server_result.job_id            UjGU97ZAy09WDV0JhlYjqQ 
_model_server_result.datetime_utc      '2024-12-01 21:04:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d3b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    7D3B 
#
_exptl.entry_id    7D3B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              286.236 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7D3B 
_cell.length_a            65.465 
_cell.length_b            65.465 
_cell.length_c            193.544 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D3B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 216 A CYS 216 1_555 A SG CYS 219 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf2 A SG CYS 219 A CYS 219 1_555 A SG CYS 233 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 219 A CYS 219 1_555 A SG CYS 236 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A C GLY 9 A GLY 9 1_555 A N MSE 10 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C MSE 10 A MSE 10 1_555 A N ARG 11 A ARG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale4 A C GLY 17 A GLY 17 1_555 A N MSE 18 A MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C MSE 18 A MSE 18 1_555 A N CYS 19 A CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 A C LEU 23 A LEU 23 1_555 A N MSE 24 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 A C MSE 24 A MSE 24 1_555 A N GLY 25 A GLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 A C GLU 28 A GLU 28 1_555 A N MSE 29 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 A C MSE 29 A MSE 29 1_555 A N GLY 30 A GLY 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C LYS 76 A LYS 76 1_555 A N MSE 77 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale11 A C MSE 77 A MSE 77 1_555 A N LEU 78 A LEU 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale12 A C ARG 108 A ARG 108 1_555 A N MSE 109 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale13 A C MSE 109 A MSE 109 1_555 A N ASP 110 A ASP 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale14 A C PHE 141 A PHE 141 1_555 A N MSE 142 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale15 A C MSE 142 A MSE 142 1_555 A N SER 143 A SER 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale16 A C GLY 158 A GLY 158 1_555 A N MSE 159 A MSE 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale17 A C MSE 159 A MSE 159 1_555 A N LEU 160 A LEU 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale18 A C PRO 164 A PRO 164 1_555 A N MSE 165 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale19 A C MSE 165 A MSE 165 1_555 A N TRP 166 A TRP 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale20 A C ASN 285 A ASN 285 1_555 A N MSE 286 A MSE 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale21 A C MSE 286 A MSE 286 1_555 A N GLN 287 A GLN 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C15 H10 O6' 
_chem_comp.formula_weight    286.236 
_chem_comp.id                LU2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Luteolin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LU2 doub 248 n y 
C1 C6 LU2 sing 249 n y 
C1 H1 LU2 sing 250 n n 
O1 C2 LU2 sing 251 n n 
O1 HO1 LU2 sing 252 n n 
C2 C3 LU2 sing 253 n y 
C4 O2 LU2 sing 254 n n 
O2 HO2 LU2 sing 255 n n 
C3 C4 LU2 doub 256 n y 
C3 H3 LU2 sing 257 n n 
C7 O3 LU2 doub 258 n n 
C5 C4 LU2 sing 259 n y 
O4 C6 LU2 sing 260 n n 
O4 C9 LU2 sing 261 n n 
C6 C5 LU2 doub 262 n y 
C5 C7 LU2 sing 263 n n 
C12 O5 LU2 sing 264 n n 
O5 HO5 LU2 sing 265 n n 
O6 C13 LU2 sing 266 n n 
O6 HO6 LU2 sing 267 n n 
C8 C7 LU2 sing 268 n n 
C9 C8 LU2 doub 269 n n 
C8 H8 LU2 sing 270 n n 
C10 C9 LU2 sing 271 n n 
C15 C10 LU2 doub 272 n y 
C10 C11 LU2 sing 273 n y 
C12 C11 LU2 doub 274 n y 
C11 H11 LU2 sing 275 n n 
C13 C12 LU2 sing 276 n y 
C14 C13 LU2 doub 277 n y 
C14 C15 LU2 sing 278 n y 
C14 H14 LU2 sing 279 n n 
C15 H15 LU2 sing 280 n n 
#
_atom_sites.entry_id                     7D3B 
_atom_sites.fract_transf_matrix[1][1]    0.015275 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015275 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 401 309 FMN FMN . 
C 3 LU2 A 1 402 400 LU2 LU2 . 
D 4 HOH A 1 501 85 HOH HOH . 
D 4 HOH A 2 502 50 HOH HOH . 
D 4 HOH A 3 503 94 HOH HOH . 
D 4 HOH A 4 504 8 HOH HOH . 
D 4 HOH A 5 505 28 HOH HOH . 
D 4 HOH A 6 506 1 HOH HOH . 
D 4 HOH A 7 507 13 HOH HOH . 
D 4 HOH A 8 508 24 HOH HOH . 
D 4 HOH A 9 509 36 HOH HOH . 
D 4 HOH A 10 510 93 HOH HOH . 
D 4 HOH A 11 511 6 HOH HOH . 
D 4 HOH A 12 512 2 HOH HOH . 
D 4 HOH A 13 513 14 HOH HOH . 
D 4 HOH A 14 514 26 HOH HOH . 
D 4 HOH A 15 515 78 HOH HOH . 
D 4 HOH A 16 516 3 HOH HOH . 
D 4 HOH A 17 517 59 HOH HOH . 
D 4 HOH A 18 518 83 HOH HOH . 
D 4 HOH A 19 519 7 HOH HOH . 
D 4 HOH A 20 520 42 HOH HOH . 
D 4 HOH A 21 521 16 HOH HOH . 
D 4 HOH A 22 522 17 HOH HOH . 
D 4 HOH A 23 523 10 HOH HOH . 
D 4 HOH A 24 524 37 HOH HOH . 
D 4 HOH A 25 525 75 HOH HOH . 
D 4 HOH A 26 526 49 HOH HOH . 
D 4 HOH A 27 527 11 HOH HOH . 
D 4 HOH A 28 528 74 HOH HOH . 
D 4 HOH A 29 529 44 HOH HOH . 
D 4 HOH A 30 530 47 HOH HOH . 
D 4 HOH A 31 531 20 HOH HOH . 
D 4 HOH A 32 532 22 HOH HOH . 
D 4 HOH A 33 533 18 HOH HOH . 
D 4 HOH A 34 534 23 HOH HOH . 
D 4 HOH A 35 535 33 HOH HOH . 
D 4 HOH A 36 536 34 HOH HOH . 
D 4 HOH A 37 537 15 HOH HOH . 
D 4 HOH A 38 538 63 HOH HOH . 
D 4 HOH A 39 539 57 HOH HOH . 
D 4 HOH A 40 540 41 HOH HOH . 
D 4 HOH A 41 541 32 HOH HOH . 
D 4 HOH A 42 542 9 HOH HOH . 
D 4 HOH A 43 543 21 HOH HOH . 
D 4 HOH A 44 544 19 HOH HOH . 
D 4 HOH A 45 545 27 HOH HOH . 
D 4 HOH A 46 546 58 HOH HOH . 
D 4 HOH A 47 547 67 HOH HOH . 
D 4 HOH A 48 548 72 HOH HOH . 
D 4 HOH A 49 549 45 HOH HOH . 
D 4 HOH A 50 550 51 HOH HOH . 
D 4 HOH A 51 551 71 HOH HOH . 
D 4 HOH A 52 552 12 HOH HOH . 
D 4 HOH A 53 553 70 HOH HOH . 
D 4 HOH A 54 554 31 HOH HOH . 
D 4 HOH A 55 555 87 HOH HOH . 
D 4 HOH A 56 556 64 HOH HOH . 
D 4 HOH A 57 557 84 HOH HOH . 
D 4 HOH A 58 558 4 HOH HOH . 
D 4 HOH A 59 559 35 HOH HOH . 
D 4 HOH A 60 560 60 HOH HOH . 
D 4 HOH A 61 561 40 HOH HOH . 
D 4 HOH A 62 562 46 HOH HOH . 
D 4 HOH A 63 563 61 HOH HOH . 
D 4 HOH A 64 564 62 HOH HOH . 
D 4 HOH A 65 565 48 HOH HOH . 
D 4 HOH A 66 566 76 HOH HOH . 
D 4 HOH A 67 567 68 HOH HOH . 
D 4 HOH A 68 568 29 HOH HOH . 
D 4 HOH A 69 569 95 HOH HOH . 
D 4 HOH A 70 570 91 HOH HOH . 
D 4 HOH A 71 571 103 HOH HOH . 
D 4 HOH A 72 572 55 HOH HOH . 
D 4 HOH A 73 573 54 HOH HOH . 
D 4 HOH A 74 574 80 HOH HOH . 
D 4 HOH A 75 575 53 HOH HOH . 
D 4 HOH A 76 576 30 HOH HOH . 
D 4 HOH A 77 577 79 HOH HOH . 
D 4 HOH A 78 578 90 HOH HOH . 
D 4 HOH A 79 579 43 HOH HOH . 
D 4 HOH A 80 580 82 HOH HOH . 
D 4 HOH A 81 581 52 HOH HOH . 
D 4 HOH A 82 582 97 HOH HOH . 
D 4 HOH A 83 583 39 HOH HOH . 
D 4 HOH A 84 584 73 HOH HOH . 
D 4 HOH A 85 585 25 HOH HOH . 
D 4 HOH A 86 586 38 HOH HOH . 
D 4 HOH A 87 587 81 HOH HOH . 
D 4 HOH A 88 588 65 HOH HOH . 
D 4 HOH A 89 589 101 HOH HOH . 
D 4 HOH A 90 590 102 HOH HOH . 
D 4 HOH A 91 591 88 HOH HOH . 
D 4 HOH A 92 592 77 HOH HOH . 
D 4 HOH A 93 593 100 HOH HOH . 
D 4 HOH A 94 594 69 HOH HOH . 
D 4 HOH A 95 595 92 HOH HOH . 
D 4 HOH A 96 596 98 HOH HOH . 
D 4 HOH A 97 597 86 HOH HOH . 
D 4 HOH A 98 598 96 HOH HOH . 
D 4 HOH A 99 599 66 HOH HOH . 
D 4 HOH A 100 600 56 HOH HOH . 
D 4 HOH A 101 601 5 HOH HOH . 
D 4 HOH A 102 602 99 HOH HOH . 
D 4 HOH A 103 603 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LU2 . . . C 3 -13.859 -1.8 -13.388 0 25.87 ? C1 LU2 402 A 1 
HETATM 2 O O1 LU2 . . . C 3 -11.606 -1.081 -13.329 0 23.18 ? O1 LU2 402 A 1 
HETATM 3 C C2 LU2 . . . C 3 -12.576 -1.818 -13.916 0 24.52 ? C2 LU2 402 A 1 
HETATM 4 O O2 LU2 . . . C 3 -12.929 -4.075 -16.744 0 28.45 ? O2 LU2 402 A 1 
HETATM 5 C C3 LU2 . . . C 3 -12.261 -2.585 -15.048 0 26.01 ? C3 LU2 402 A 1 
HETATM 6 O O3 LU2 . . . C 3 -15.471 -4.843 -16.753 0 29.89 ? O3 LU2 402 A 1 
HETATM 7 C C4 LU2 . . . C 3 -13.239 -3.338 -15.653 0 27.65 ? C4 LU2 402 A 1 
HETATM 8 O O4 LU2 . . . C 3 -16.078 -2.518 -13.457 0 31.63 ? O4 LU2 402 A 1 
HETATM 9 C C5 LU2 . . . C 3 -14.562 -3.348 -15.146 0 28.58 ? C5 LU2 402 A 1 
HETATM 10 O O5 LU2 . . . C 3 -21.865 -2.149 -13.991 0 54.33 ? O5 LU2 402 A 1 
HETATM 11 C C6 LU2 . . . C 3 -14.821 -2.568 -14.018 0 28.43 ? C6 LU2 402 A 1 
HETATM 12 O O6 LU2 . . . C 3 -22.018 -2.665 -11.34 0 53.74 ? O6 LU2 402 A 1 
HETATM 13 C C7 LU2 . . . C 3 -15.637 -4.125 -15.744 0 30.23 ? C7 LU2 402 A 1 
HETATM 14 C C8 LU2 . . . C 3 -16.91 -4.01 -15.091 0 32.65 ? C8 LU2 402 A 1 
HETATM 15 C C9 LU2 . . . C 3 -17.095 -3.239 -14.004 0 35.9 ? C9 LU2 402 A 1 
HETATM 16 C C10 LU2 . . . C 3 -18.379 -3.09 -13.303 0 44.04 ? C10 LU2 402 A 1 
HETATM 17 C C11 LU2 . . . C 3 -19.528 -2.684 -13.991 0 48.65 ? C11 LU2 402 A 1 
HETATM 18 C C12 LU2 . . . C 3 -20.734 -2.545 -13.333 0 52.3 ? C12 LU2 402 A 1 
HETATM 19 C C13 LU2 . . . C 3 -20.817 -2.811 -11.964 0 52.57 ? C13 LU2 402 A 1 
HETATM 20 C C14 LU2 . . . C 3 -19.693 -3.212 -11.273 0 50.41 ? C14 LU2 402 A 1 
HETATM 21 C C15 LU2 . . . C 3 -18.482 -3.351 -11.938 0 47.47 ? C15 LU2 402 A 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           932 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#