data_7D3Y # _model_server_result.job_id rxMpiQSoSyRRG-EDvDvILA _model_server_result.datetime_utc '2024-11-22 21:12:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 7D3Y # _exptl.entry_id 7D3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7D3Y _cell.length_a 147.812 _cell.length_b 147.812 _cell.length_c 143.287 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 150 n n C1 C6 IHP sing 151 n n C1 O11 IHP sing 152 n n C1 H1 IHP sing 153 n n C2 C3 IHP sing 154 n n C2 O12 IHP sing 155 n n C2 H2 IHP sing 156 n n C3 C4 IHP sing 157 n n C3 O13 IHP sing 158 n n C3 H3 IHP sing 159 n n C4 C5 IHP sing 160 n n C4 O14 IHP sing 161 n n C4 H4 IHP sing 162 n n C5 C6 IHP sing 163 n n C5 O15 IHP sing 164 n n C5 H5 IHP sing 165 n n C6 O16 IHP sing 166 n n C6 H6 IHP sing 167 n n O11 P1 IHP sing 168 n n P1 O21 IHP doub 169 n n P1 O31 IHP sing 170 n n P1 O41 IHP sing 171 n n O31 H31 IHP sing 172 n n O41 H41 IHP sing 173 n n O12 P2 IHP sing 174 n n P2 O22 IHP doub 175 n n P2 O32 IHP sing 176 n n P2 O42 IHP sing 177 n n O32 H32 IHP sing 178 n n O42 H42 IHP sing 179 n n O13 P3 IHP sing 180 n n P3 O23 IHP doub 181 n n P3 O33 IHP sing 182 n n P3 O43 IHP sing 183 n n O33 H33 IHP sing 184 n n O43 H43 IHP sing 185 n n O14 P4 IHP sing 186 n n P4 O24 IHP doub 187 n n P4 O34 IHP sing 188 n n P4 O44 IHP sing 189 n n O34 H34 IHP sing 190 n n O44 H44 IHP sing 191 n n O15 P5 IHP sing 192 n n P5 O25 IHP doub 193 n n P5 O35 IHP sing 194 n n P5 O45 IHP sing 195 n n O35 H35 IHP sing 196 n n O45 H45 IHP sing 197 n n O16 P6 IHP sing 198 n n P6 O26 IHP doub 199 n n P6 O36 IHP sing 200 n n P6 O46 IHP sing 201 n n O36 H36 IHP sing 202 n n O46 H46 IHP sing 203 n n # _atom_sites.entry_id 7D3Y _atom_sites.fract_transf_matrix[1][1] 0.006765 _atom_sites.fract_transf_matrix[1][2] 0.003906 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 IHP A 1 401 1 IHP I6P . G 3 IHP A 1 402 2 IHP I6P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . G 3 38.933 -93.148 -6.387 1 274.35 ? C1 IHP 402 A 1 HETATM 2 C C2 IHP . . . G 3 37.416 -93.326 -6.272 1 280.18 ? C2 IHP 402 A 1 HETATM 3 C C3 IHP . . . G 3 36.944 -92.834 -4.893 1 276.4 ? C3 IHP 402 A 1 HETATM 4 C C4 IHP . . . G 3 37.322 -91.349 -4.743 1 276.94 ? C4 IHP 402 A 1 HETATM 5 C C5 IHP . . . G 3 38.824 -91.062 -4.943 1 275.01 ? C5 IHP 402 A 1 HETATM 6 C C6 IHP . . . G 3 39.336 -91.674 -6.258 1 276.76 ? C6 IHP 402 A 1 HETATM 7 O O11 IHP . . . G 3 39.461 -93.715 -7.564 1 272.14 ? O11 IHP 402 A 1 HETATM 8 P P1 IHP . . . G 3 38.848 -93.5 -9.048 1 282.57 ? P1 IHP 402 A 1 HETATM 9 O O21 IHP . . . G 3 40.071 -93.392 -10.085 1 252.79 ? O21 IHP 402 A 1 HETATM 10 O O31 IHP . . . G 3 37.978 -94.801 -9.439 1 285.95 ? O31 IHP 402 A 1 HETATM 11 O O41 IHP . . . G 3 37.962 -92.181 -9.235 1 280.05 ? O41 IHP 402 A 1 HETATM 12 O O12 IHP . . . G 3 37.143 -94.696 -6.437 1 286.66 ? O12 IHP 402 A 1 HETATM 13 P P2 IHP . . . G 3 35.745 -95.244 -7.043 1 288.45 ? P2 IHP 402 A 1 HETATM 14 O O22 IHP . . . G 3 34.858 -95.911 -5.894 1 270.5 ? O22 IHP 402 A 1 HETATM 15 O O32 IHP . . . G 3 34.917 -94.111 -7.814 1 287.92 ? O32 IHP 402 A 1 HETATM 16 O O42 IHP . . . G 3 36.159 -96.355 -8.133 1 270.09 ? O42 IHP 402 A 1 HETATM 17 O O13 IHP . . . G 3 35.555 -93.033 -4.852 1 280.5 ? O13 IHP 402 A 1 HETATM 18 P P3 IHP . . . G 3 34.698 -93.133 -3.488 1 278.89 ? P3 IHP 402 A 1 HETATM 19 O O23 IHP . . . G 3 33.671 -94.351 -3.732 1 261.66 ? O23 IHP 402 A 1 HETATM 20 O O33 IHP . . . G 3 33.881 -91.783 -3.239 1 276.16 ? O33 IHP 402 A 1 HETATM 21 O O43 IHP . . . G 3 35.573 -93.546 -2.216 1 263.98 ? O43 IHP 402 A 1 HETATM 22 O O14 IHP . . . G 3 36.811 -90.794 -3.553 1 279.99 ? O14 IHP 402 A 1 HETATM 23 P P4 IHP . . . G 3 37.573 -90.849 -2.125 1 261.87 ? P4 IHP 402 A 1 HETATM 24 O O24 IHP . . . G 3 38.382 -92.209 -1.901 1 268.38 ? O24 IHP 402 A 1 HETATM 25 O O34 IHP . . . G 3 36.452 -90.738 -0.98 1 223.25 ? O34 IHP 402 A 1 HETATM 26 O O44 IHP . . . G 3 38.538 -89.574 -1.997 1 220.95 ? O44 IHP 402 A 1 HETATM 27 O O15 IHP . . . G 3 38.94 -89.658 -4.925 1 265.03 ? O15 IHP 402 A 1 HETATM 28 P P5 IHP . . . G 3 40.333 -88.865 -4.723 1 234.86 ? P5 IHP 402 A 1 HETATM 29 O O25 IHP . . . G 3 41.116 -88.64 -6.097 1 257.88 ? O25 IHP 402 A 1 HETATM 30 O O35 IHP . . . G 3 39.956 -87.439 -4.089 1 168.05 ? O35 IHP 402 A 1 HETATM 31 O O45 IHP . . . G 3 41.231 -89.634 -3.637 1 209.52 ? O45 IHP 402 A 1 HETATM 32 O O16 IHP . . . G 3 40.716 -91.477 -6.451 1 282.22 ? O16 IHP 402 A 1 HETATM 33 P P6 IHP . . . G 3 41.878 -92.335 -5.72 1 266.82 ? P6 IHP 402 A 1 HETATM 34 O O26 IHP . . . G 3 43.104 -91.348 -5.397 1 230.53 ? O26 IHP 402 A 1 HETATM 35 O O36 IHP . . . G 3 42.385 -93.497 -6.702 1 233.08 ? O36 IHP 402 A 1 HETATM 36 O O46 IHP . . . G 3 41.436 -93.022 -4.338 1 254.47 ? O46 IHP 402 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #