data_7D4D # _model_server_result.job_id tX9EYNtsT4t34aoyD6gCRA _model_server_result.datetime_utc '2025-04-26 15:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 7D4D # _exptl.entry_id 7D4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.195 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description LYSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D4D _cell.length_a 94.31 _cell.length_b 127.96 _cell.length_c 94.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H15 N2 O2 1' _chem_comp.formula_weight 147.195 _chem_comp.id LYS _chem_comp.mon_nstd_flag y _chem_comp.name LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LYS sing 285 n n N H LYS sing 286 n n N H2 LYS sing 287 n n CA C LYS sing 288 n n CA CB LYS sing 289 n n CA HA LYS sing 290 n n C O LYS doub 291 n n C OXT LYS sing 292 n n CB CG LYS sing 293 n n CB HB2 LYS sing 294 n n CB HB3 LYS sing 295 n n CG CD LYS sing 296 n n CG HG2 LYS sing 297 n n CG HG3 LYS sing 298 n n CD CE LYS sing 299 n n CD HD2 LYS sing 300 n n CD HD3 LYS sing 301 n n CE NZ LYS sing 302 n n CE HE2 LYS sing 303 n n CE HE3 LYS sing 304 n n NZ HZ1 LYS sing 305 n n NZ HZ2 LYS sing 306 n n NZ HZ3 LYS sing 307 n n OXT HXT LYS sing 308 n n # _atom_sites.entry_id 7D4D _atom_sites.fract_transf_matrix[1][1] 0.010603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 800 800 FAD FAD . C 3 LYS A 1 801 801 LYS LYS . D 4 HOH A 1 901 56 HOH HOH . D 4 HOH A 2 902 203 HOH HOH . D 4 HOH A 3 903 97 HOH HOH . D 4 HOH A 4 904 66 HOH HOH . D 4 HOH A 5 905 24 HOH HOH . D 4 HOH A 6 906 45 HOH HOH . D 4 HOH A 7 907 44 HOH HOH . D 4 HOH A 8 908 10 HOH HOH . D 4 HOH A 9 909 121 HOH HOH . D 4 HOH A 10 910 125 HOH HOH . D 4 HOH A 11 911 68 HOH HOH . D 4 HOH A 12 912 105 HOH HOH . D 4 HOH A 13 913 173 HOH HOH . D 4 HOH A 14 914 201 HOH HOH . D 4 HOH A 15 915 53 HOH HOH . D 4 HOH A 16 916 5 HOH HOH . D 4 HOH A 17 917 202 HOH HOH . D 4 HOH A 18 918 204 HOH HOH . D 4 HOH A 19 919 139 HOH HOH . D 4 HOH A 20 920 101 HOH HOH . D 4 HOH A 21 921 140 HOH HOH . D 4 HOH A 22 922 145 HOH HOH . D 4 HOH A 23 923 95 HOH HOH . D 4 HOH A 24 924 34 HOH HOH . D 4 HOH A 25 925 150 HOH HOH . D 4 HOH A 26 926 87 HOH HOH . D 4 HOH A 27 927 134 HOH HOH . D 4 HOH A 28 928 110 HOH HOH . D 4 HOH A 29 929 7 HOH HOH . D 4 HOH A 30 930 74 HOH HOH . D 4 HOH A 31 931 6 HOH HOH . D 4 HOH A 32 932 4 HOH HOH . D 4 HOH A 33 933 39 HOH HOH . D 4 HOH A 34 934 25 HOH HOH . D 4 HOH A 35 935 28 HOH HOH . D 4 HOH A 36 936 127 HOH HOH . D 4 HOH A 37 937 123 HOH HOH . D 4 HOH A 38 938 120 HOH HOH . D 4 HOH A 39 939 42 HOH HOH . D 4 HOH A 40 940 49 HOH HOH . D 4 HOH A 41 941 9 HOH HOH . D 4 HOH A 42 942 177 HOH HOH . D 4 HOH A 43 943 86 HOH HOH . D 4 HOH A 44 944 2 HOH HOH . D 4 HOH A 45 945 35 HOH HOH . D 4 HOH A 46 946 89 HOH HOH . D 4 HOH A 47 947 64 HOH HOH . D 4 HOH A 48 948 48 HOH HOH . D 4 HOH A 49 949 115 HOH HOH . D 4 HOH A 50 950 11 HOH HOH . D 4 HOH A 51 951 27 HOH HOH . D 4 HOH A 52 952 3 HOH HOH . D 4 HOH A 53 953 18 HOH HOH . D 4 HOH A 54 954 90 HOH HOH . D 4 HOH A 55 955 8 HOH HOH . D 4 HOH A 56 956 12 HOH HOH . D 4 HOH A 57 957 21 HOH HOH . D 4 HOH A 58 958 80 HOH HOH . D 4 HOH A 59 959 187 HOH HOH . D 4 HOH A 60 960 141 HOH HOH . D 4 HOH A 61 961 82 HOH HOH . D 4 HOH A 62 962 172 HOH HOH . D 4 HOH A 63 963 128 HOH HOH . D 4 HOH A 64 964 164 HOH HOH . D 4 HOH A 65 965 106 HOH HOH . D 4 HOH A 66 966 111 HOH HOH . D 4 HOH A 67 967 17 HOH HOH . D 4 HOH A 68 968 15 HOH HOH . D 4 HOH A 69 969 194 HOH HOH . D 4 HOH A 70 970 113 HOH HOH . D 4 HOH A 71 971 67 HOH HOH . D 4 HOH A 72 972 1 HOH HOH . D 4 HOH A 73 973 50 HOH HOH . D 4 HOH A 74 974 37 HOH HOH . D 4 HOH A 75 975 41 HOH HOH . D 4 HOH A 76 976 170 HOH HOH . D 4 HOH A 77 977 147 HOH HOH . D 4 HOH A 78 978 159 HOH HOH . D 4 HOH A 79 979 60 HOH HOH . D 4 HOH A 80 980 19 HOH HOH . D 4 HOH A 81 981 103 HOH HOH . D 4 HOH A 82 982 30 HOH HOH . D 4 HOH A 83 983 20 HOH HOH . D 4 HOH A 84 984 152 HOH HOH . D 4 HOH A 85 985 156 HOH HOH . D 4 HOH A 86 986 40 HOH HOH . D 4 HOH A 87 987 57 HOH HOH . D 4 HOH A 88 988 116 HOH HOH . D 4 HOH A 89 989 46 HOH HOH . D 4 HOH A 90 990 133 HOH HOH . D 4 HOH A 91 991 100 HOH HOH . D 4 HOH A 92 992 26 HOH HOH . D 4 HOH A 93 993 117 HOH HOH . D 4 HOH A 94 994 47 HOH HOH . D 4 HOH A 95 995 122 HOH HOH . D 4 HOH A 96 996 63 HOH HOH . D 4 HOH A 97 997 71 HOH HOH . D 4 HOH A 98 998 78 HOH HOH . D 4 HOH A 99 999 65 HOH HOH . D 4 HOH A 100 1000 188 HOH HOH . D 4 HOH A 101 1001 92 HOH HOH . D 4 HOH A 102 1002 131 HOH HOH . D 4 HOH A 103 1003 107 HOH HOH . D 4 HOH A 104 1004 135 HOH HOH . D 4 HOH A 105 1005 32 HOH HOH . D 4 HOH A 106 1006 126 HOH HOH . D 4 HOH A 107 1007 81 HOH HOH . D 4 HOH A 108 1008 130 HOH HOH . D 4 HOH A 109 1009 22 HOH HOH . D 4 HOH A 110 1010 148 HOH HOH . D 4 HOH A 111 1011 79 HOH HOH . D 4 HOH A 112 1012 62 HOH HOH . D 4 HOH A 113 1013 112 HOH HOH . D 4 HOH A 114 1014 75 HOH HOH . D 4 HOH A 115 1015 179 HOH HOH . D 4 HOH A 116 1016 129 HOH HOH . D 4 HOH A 117 1017 195 HOH HOH . D 4 HOH A 118 1018 16 HOH HOH . D 4 HOH A 119 1019 14 HOH HOH . D 4 HOH A 120 1020 104 HOH HOH . D 4 HOH A 121 1021 54 HOH HOH . D 4 HOH A 122 1022 43 HOH HOH . D 4 HOH A 123 1023 96 HOH HOH . D 4 HOH A 124 1024 93 HOH HOH . D 4 HOH A 125 1025 13 HOH HOH . D 4 HOH A 126 1026 88 HOH HOH . D 4 HOH A 127 1027 108 HOH HOH . D 4 HOH A 128 1028 61 HOH HOH . D 4 HOH A 129 1029 77 HOH HOH . D 4 HOH A 130 1030 51 HOH HOH . D 4 HOH A 131 1031 58 HOH HOH . D 4 HOH A 132 1032 174 HOH HOH . D 4 HOH A 133 1033 189 HOH HOH . D 4 HOH A 134 1034 182 HOH HOH . D 4 HOH A 135 1035 157 HOH HOH . D 4 HOH A 136 1036 190 HOH HOH . D 4 HOH A 137 1037 184 HOH HOH . D 4 HOH A 138 1038 83 HOH HOH . D 4 HOH A 139 1039 94 HOH HOH . D 4 HOH A 140 1040 76 HOH HOH . D 4 HOH A 141 1041 162 HOH HOH . D 4 HOH A 142 1042 168 HOH HOH . D 4 HOH A 143 1043 143 HOH HOH . D 4 HOH A 144 1044 31 HOH HOH . D 4 HOH A 145 1045 196 HOH HOH . D 4 HOH A 146 1046 84 HOH HOH . D 4 HOH A 147 1047 132 HOH HOH . D 4 HOH A 148 1048 176 HOH HOH . D 4 HOH A 149 1049 38 HOH HOH . D 4 HOH A 150 1050 153 HOH HOH . D 4 HOH A 151 1051 180 HOH HOH . D 4 HOH A 152 1052 183 HOH HOH . D 4 HOH A 153 1053 119 HOH HOH . D 4 HOH A 154 1054 109 HOH HOH . D 4 HOH A 155 1055 161 HOH HOH . D 4 HOH A 156 1056 144 HOH HOH . D 4 HOH A 157 1057 55 HOH HOH . D 4 HOH A 158 1058 149 HOH HOH . D 4 HOH A 159 1059 166 HOH HOH . D 4 HOH A 160 1060 197 HOH HOH . D 4 HOH A 161 1061 137 HOH HOH . D 4 HOH A 162 1062 192 HOH HOH . D 4 HOH A 163 1063 36 HOH HOH . D 4 HOH A 164 1064 198 HOH HOH . D 4 HOH A 165 1065 23 HOH HOH . D 4 HOH A 166 1066 151 HOH HOH . D 4 HOH A 167 1067 171 HOH HOH . D 4 HOH A 168 1068 193 HOH HOH . D 4 HOH A 169 1069 163 HOH HOH . D 4 HOH A 170 1070 181 HOH HOH . D 4 HOH A 171 1071 200 HOH HOH . D 4 HOH A 172 1072 136 HOH HOH . D 4 HOH A 173 1073 72 HOH HOH . D 4 HOH A 174 1074 158 HOH HOH . D 4 HOH A 175 1075 169 HOH HOH . D 4 HOH A 176 1076 118 HOH HOH . D 4 HOH A 177 1077 85 HOH HOH . D 4 HOH A 178 1078 33 HOH HOH . D 4 HOH A 179 1079 70 HOH HOH . D 4 HOH A 180 1080 191 HOH HOH . D 4 HOH A 181 1081 69 HOH HOH . D 4 HOH A 182 1082 124 HOH HOH . D 4 HOH A 183 1083 102 HOH HOH . D 4 HOH A 184 1084 154 HOH HOH . D 4 HOH A 185 1085 91 HOH HOH . D 4 HOH A 186 1086 98 HOH HOH . D 4 HOH A 187 1087 165 HOH HOH . D 4 HOH A 188 1088 142 HOH HOH . D 4 HOH A 189 1089 52 HOH HOH . D 4 HOH A 190 1090 99 HOH HOH . D 4 HOH A 191 1091 59 HOH HOH . D 4 HOH A 192 1092 199 HOH HOH . D 4 HOH A 193 1093 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LYS . . . C 3 21.575 12.761 -12.552 0.83 32.19 ? N LYS 801 A 1 HETATM 2 C CA LYS . . . C 3 22.159 11.424 -12.569 0.83 37.82 ? CA LYS 801 A 1 HETATM 3 C C LYS . . . C 3 22.346 10.91 -14.01 0.83 41.13 ? C LYS 801 A 1 HETATM 4 O O LYS . . . C 3 22.287 11.661 -14.992 0.83 34.67 ? O LYS 801 A 1 HETATM 5 C CB LYS . . . C 3 21.286 10.458 -11.757 0.83 34.79 ? CB LYS 801 A 1 HETATM 6 C CG LYS . . . C 3 19.811 10.547 -12.101 0.83 37.91 ? CG LYS 801 A 1 HETATM 7 C CD LYS . . . C 3 18.98 9.514 -11.357 0.83 42.21 ? CD LYS 801 A 1 HETATM 8 C CE LYS . . . C 3 18.845 9.878 -9.901 0.83 44.66 ? CE LYS 801 A 1 HETATM 9 N NZ LYS . . . C 3 18.03 8.894 -9.146 0.83 47.36 ? NZ LYS 801 A 1 HETATM 10 O OXT LYS . . . C 3 22.565 9.717 -14.235 0.83 41.82 ? OXT LYS 801 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #