data_7D4Q # _model_server_result.job_id IgbxNiGcpjKR99NFkP3MTA _model_server_result.datetime_utc '2024-11-21 13:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":803}' # _entry.id 7D4Q # _exptl.entry_id 7D4Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 M N N ? 4 S N N ? 4 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 A OE1 GLU 418 A GLU 418 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc6 A OD1 ASN 436 A ASN 436 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc7 A OD2 ASP 439 A ASP 439 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc8 B ND1 HIS 172 B HIS 172 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc9 B SG CYS 176 B CYS 176 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 B SG CYS 178 B CYS 178 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 B SG CYS 181 B CYS 181 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc12 B OE1 GLU 418 B GLU 418 1_555 O CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc13 B OD1 ASN 436 B ASN 436 1_555 O CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc14 B OD2 ASP 439 B ASP 439 1_555 O CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc15 C ND1 HIS 172 C HIS 172 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc16 C SG CYS 176 C CYS 176 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc17 C SG CYS 178 C CYS 178 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc18 C SG CYS 181 C CYS 181 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc19 C OE1 GLU 418 C GLU 418 1_555 U CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc20 C OD1 ASN 436 C ASN 436 1_555 U CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc21 C OD2 ASP 439 C ASP 439 1_555 U CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc22 D ND1 HIS 172 D HIS 172 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc23 D SG CYS 176 D CYS 176 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc24 D SG CYS 178 D CYS 178 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc25 D SG CYS 181 D CYS 181 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc26 D OE1 GLU 418 D GLU 418 1_555 AA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc27 D OD1 ASN 436 D ASN 436 1_555 AA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc28 D OD2 ASP 439 D ASP 439 1_555 AA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 691 n n CBA CAB Y01 sing 692 n n CBA CAN Y01 sing 693 n n CAN CAJ Y01 sing 694 n n CAJ CAO Y01 sing 695 n n CAO CBB Y01 sing 696 n n CBB CAC Y01 sing 697 n n CBB CBE Y01 sing 698 n n CBE CAP Y01 sing 699 n n CBE CBI Y01 sing 700 n n CAP CAQ Y01 sing 701 n n CAQ CBG Y01 sing 702 n n CBG CBI Y01 sing 703 n n CBG CBD Y01 sing 704 n n CBI CAE Y01 sing 705 n n CBI CAU Y01 sing 706 n n CAU CAS Y01 sing 707 n n CAS CBF Y01 sing 708 n n CBF CBD Y01 sing 709 n n CBF CBH Y01 sing 710 n n CBD CAK Y01 sing 711 n n CAK CAI Y01 sing 712 n n CAI CAZ Y01 doub 713 n n CAZ CAV Y01 sing 714 n n CAZ CBH Y01 sing 715 n n CAV CBC Y01 sing 716 n n CBH CAD Y01 sing 717 n n CBH CAT Y01 sing 718 n n CAT CAR Y01 sing 719 n n CAR CBC Y01 sing 720 n n CBC OAW Y01 sing 721 n n OAW CAY Y01 sing 722 n n CAY OAG Y01 doub 723 n n CAY CAM Y01 sing 724 n n CAM CAL Y01 sing 725 n n CAL CAX Y01 sing 726 n n CAX OAH Y01 sing 727 n n CAX OAF Y01 doub 728 n n CAA HAA1 Y01 sing 729 n n CAA HAA2 Y01 sing 730 n n CAA HAA3 Y01 sing 731 n n CBA HBA Y01 sing 732 n n CAB HAB1 Y01 sing 733 n n CAB HAB2 Y01 sing 734 n n CAB HAB3 Y01 sing 735 n n CAN HAN1 Y01 sing 736 n n CAN HAN2 Y01 sing 737 n n CAJ HAJ1 Y01 sing 738 n n CAJ HAJ2 Y01 sing 739 n n CAO HAO1 Y01 sing 740 n n CAO HAO2 Y01 sing 741 n n CBB HBB Y01 sing 742 n n CAC HAC1 Y01 sing 743 n n CAC HAC2 Y01 sing 744 n n CAC HAC3 Y01 sing 745 n n CBE HBE Y01 sing 746 n n CAP HAP1 Y01 sing 747 n n CAP HAP2 Y01 sing 748 n n CAQ HAQ1 Y01 sing 749 n n CAQ HAQ2 Y01 sing 750 n n CBG HBG Y01 sing 751 n n CBD HBD Y01 sing 752 n n CAE HAE1 Y01 sing 753 n n CAE HAE2 Y01 sing 754 n n CAE HAE3 Y01 sing 755 n n CAU HAU1 Y01 sing 756 n n CAU HAU2 Y01 sing 757 n n CAS HAS1 Y01 sing 758 n n CAS HAS2 Y01 sing 759 n n CBF HBF Y01 sing 760 n n CAK HAK1 Y01 sing 761 n n CAK HAK2 Y01 sing 762 n n CAI HAI Y01 sing 763 n n CAV HAV1 Y01 sing 764 n n CAV HAV2 Y01 sing 765 n n CBC HBC Y01 sing 766 n n CAD HAD1 Y01 sing 767 n n CAD HAD2 Y01 sing 768 n n CAD HAD3 Y01 sing 769 n n CAT HAT1 Y01 sing 770 n n CAT HAT2 Y01 sing 771 n n CAR HAR1 Y01 sing 772 n n CAR HAR2 Y01 sing 773 n n CAM HAM1 Y01 sing 774 n n CAM HAM2 Y01 sing 775 n n CAL HAL1 Y01 sing 776 n n CAL HAL2 Y01 sing 777 n n OAH HAH Y01 sing 778 n n # _atom_sites.entry_id 7D4Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PTY A 1 801 801 PTY PTY . F 3 POV A 1 802 901 POV POV . G 4 Y01 A 1 803 1001 Y01 Y01 . H 5 ZN A 1 804 1101 ZN ZN . I 6 CA A 1 805 1201 CA CA . J 7 GWR A 1 806 1301 GWR LIG . K 2 PTY B 1 801 801 PTY PTY . L 3 POV B 1 802 901 POV POV . M 4 Y01 B 1 803 1001 Y01 Y01 . N 5 ZN B 1 804 1101 ZN ZN . O 6 CA B 1 805 1201 CA CA . P 7 GWR B 1 806 1301 GWR LIG . Q 2 PTY C 1 801 801 PTY PTY . R 3 POV C 1 802 901 POV POV . S 4 Y01 C 1 803 1001 Y01 Y01 . T 5 ZN C 1 804 1101 ZN ZN . U 6 CA C 1 805 1201 CA CA . V 7 GWR C 1 806 1301 GWR LIG . W 2 PTY D 1 801 801 PTY PTY . X 3 POV D 1 802 901 POV POV . Y 4 Y01 D 1 803 1001 Y01 Y01 . Z 5 ZN D 1 804 1101 ZN ZN . AA 6 CA D 1 805 1201 CA CA . BA 7 GWR D 1 806 1301 GWR LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . M 4 143.047 172.911 133.324 1 122.31 ? CAA Y01 803 B 1 HETATM 2 C CBA Y01 . . . M 4 144.313 172.415 134.003 1 132.9 ? CBA Y01 803 B 1 HETATM 3 C CAB Y01 . . . M 4 144.092 172.187 135.491 1 133.81 ? CAB Y01 803 B 1 HETATM 4 C CAN Y01 . . . M 4 145.436 173.403 133.802 1 125.14 ? CAN Y01 803 B 1 HETATM 5 C CAJ Y01 . . . M 4 145.105 174.642 134.614 1 130.03 ? CAJ Y01 803 B 1 HETATM 6 C CAO Y01 . . . M 4 146.186 175.7 134.473 1 127.6 ? CAO Y01 803 B 1 HETATM 7 C CBB Y01 . . . M 4 145.957 176.782 135.508 1 122.5 ? CBB Y01 803 B 1 HETATM 8 C CAC Y01 . . . M 4 144.756 177.636 135.13 1 121.55 ? CAC Y01 803 B 1 HETATM 9 C CBE Y01 . . . M 4 145.727 176.147 136.864 1 122.75 ? CBE Y01 803 B 1 HETATM 10 C CAP Y01 . . . M 4 146.537 174.879 137.116 1 113.65 ? CAP Y01 803 B 1 HETATM 11 C CAQ Y01 . . . M 4 146.992 174.946 138.572 1 120.58 ? CAQ Y01 803 B 1 HETATM 12 C CBG Y01 . . . M 4 146.202 176.102 139.152 1 126.6 ? CBG Y01 803 B 1 HETATM 13 C CBI Y01 . . . M 4 146.098 177.063 138 1 125.06 ? CBI Y01 803 B 1 HETATM 14 C CAE Y01 . . . M 4 147.456 177.698 137.824 1 115.63 ? CAE Y01 803 B 1 HETATM 15 C CAU Y01 . . . M 4 145.094 178.131 138.361 1 120.93 ? CAU Y01 803 B 1 HETATM 16 C CAS Y01 . . . M 4 145.497 178.825 139.658 1 117.61 ? CAS Y01 803 B 1 HETATM 17 C CBF Y01 . . . M 4 145.786 177.862 140.838 1 119.75 ? CBF Y01 803 B 1 HETATM 18 C CBD Y01 . . . M 4 146.745 176.752 140.415 1 116.91 ? CBD Y01 803 B 1 HETATM 19 C CAK Y01 . . . M 4 146.877 175.721 141.515 1 113.8 ? CAK Y01 803 B 1 HETATM 20 C CAI Y01 . . . M 4 147.172 176.373 142.835 1 119.07 ? CAI Y01 803 B 1 HETATM 21 C CAZ Y01 . . . M 4 146.592 177.509 143.22 1 120.98 ? CAZ Y01 803 B 1 HETATM 22 C CAV Y01 . . . M 4 146.446 177.738 144.719 1 111.53 ? CAV Y01 803 B 1 HETATM 23 C CBH Y01 . . . M 4 146.197 178.523 142.173 1 122.06 ? CBH Y01 803 B 1 HETATM 24 C CAD Y01 . . . M 4 147.386 179.445 142.026 1 114.06 ? CAD Y01 803 B 1 HETATM 25 C CAT Y01 . . . M 4 145.056 179.341 142.729 1 121.53 ? CAT Y01 803 B 1 HETATM 26 C CAR Y01 . . . M 4 145.414 179.894 144.095 1 120.56 ? CAR Y01 803 B 1 HETATM 27 C CBC Y01 . . . M 4 145.4 178.774 145.119 1 116.18 ? CBC Y01 803 B 1 HETATM 28 O OAW Y01 . . . M 4 145.584 179.298 146.42 1 122.07 ? OAW Y01 803 B 1 HETATM 29 C CAY Y01 . . . M 4 144.491 178.862 147.255 1 112.72 ? CAY Y01 803 B 1 HETATM 30 O OAG Y01 . . . M 4 144.188 177.702 147.26 1 106.02 ? OAG Y01 803 B 1 HETATM 31 C CAM Y01 . . . M 4 143.711 179.808 148.111 1 109.74 ? CAM Y01 803 B 1 HETATM 32 C CAL Y01 . . . M 4 144.264 179.751 149.515 1 109.22 ? CAL Y01 803 B 1 HETATM 33 C CAX Y01 . . . M 4 145.619 180.394 149.447 1 110.62 ? CAX Y01 803 B 1 HETATM 34 O OAH Y01 . . . M 4 145.944 181.43 150.169 1 105.83 ? OAH Y01 803 B 1 HETATM 35 O OAF Y01 . . . M 4 146.468 179.984 148.705 1 110.29 ? OAF Y01 803 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 35 #