data_7D4Q # _model_server_result.job_id sDKi5rjjgIocWtty2FtrSg _model_server_result.datetime_utc '2024-11-21 13:58:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":806}' # _entry.id 7D4Q # _exptl.entry_id 7D4Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 475.325 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-(3-chloranylphenoxy)-7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)purine-2,6-dione _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 P N N ? 7 V N N ? 7 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 A OE1 GLU 418 A GLU 418 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc6 A OD1 ASN 436 A ASN 436 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc7 A OD2 ASP 439 A ASP 439 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc8 B ND1 HIS 172 B HIS 172 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc9 B SG CYS 176 B CYS 176 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 B SG CYS 178 B CYS 178 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 B SG CYS 181 B CYS 181 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc12 B OE1 GLU 418 B GLU 418 1_555 O CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc13 B OD1 ASN 436 B ASN 436 1_555 O CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc14 B OD2 ASP 439 B ASP 439 1_555 O CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc15 C ND1 HIS 172 C HIS 172 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc16 C SG CYS 176 C CYS 176 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc17 C SG CYS 178 C CYS 178 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc18 C SG CYS 181 C CYS 181 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc19 C OE1 GLU 418 C GLU 418 1_555 U CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc20 C OD1 ASN 436 C ASN 436 1_555 U CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc21 C OD2 ASP 439 C ASP 439 1_555 U CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc22 D ND1 HIS 172 D HIS 172 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc23 D SG CYS 176 D CYS 176 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc24 D SG CYS 178 D CYS 178 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc25 D SG CYS 181 D CYS 181 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc26 D OE1 GLU 418 D GLU 418 1_555 AA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc27 D OD1 ASN 436 D ASN 436 1_555 AA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc28 D OD2 ASP 439 D ASP 439 1_555 AA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? # _chem_comp.formula 'C22 H20 Cl2 N4 O4' _chem_comp.formula_weight 475.325 _chem_comp.id GWR _chem_comp.mon_nstd_flag . _chem_comp.name 8-(3-chloranylphenoxy)-7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 C21 GWR sing 129 n n C21 C18 GWR sing 130 n n C18 C14 GWR sing 131 n n C14 N08 GWR sing 132 n n O04 C13 GWR doub 133 n n C26 C23 GWR doub 134 n y C26 C27 GWR sing 135 n y C23 C19 GWR sing 136 n y N08 C13 GWR sing 137 n n N08 C16 GWR sing 138 n n CL1 C27 GWR sing 139 n n C13 C11 GWR sing 140 n n C27 C25 GWR doub 141 n y O05 C16 GWR doub 142 n n C16 N09 GWR sing 143 n n C19 C15 GWR sing 144 n n C19 C22 GWR doub 145 n y C15 N07 GWR sing 146 n n C11 N07 GWR sing 147 n y C11 C12 GWR doub 148 n y C25 C22 GWR sing 149 n y N07 C17 GWR sing 150 n y N09 C12 GWR sing 151 n n N09 C20 GWR sing 152 n n C12 N10 GWR sing 153 n y C17 N10 GWR doub 154 n y C17 O03 GWR sing 155 n n O03 C24 GWR sing 156 n n C28 C24 GWR doub 157 n y C28 C30 GWR sing 158 n y CL2 C30 GWR sing 159 n n C24 C29 GWR sing 160 n y C30 C32 GWR doub 161 n y C29 C31 GWR doub 162 n y C32 C31 GWR sing 163 n y C15 H1 GWR sing 164 n n C15 H2 GWR sing 165 n n C20 H3 GWR sing 166 n n C20 H4 GWR sing 167 n n C20 H5 GWR sing 168 n n C21 H6 GWR sing 169 n n C21 H7 GWR sing 170 n n C22 H8 GWR sing 171 n n C26 H9 GWR sing 172 n n C28 H10 GWR sing 173 n n C14 H11 GWR sing 174 n n C14 H12 GWR sing 175 n n C18 H13 GWR sing 176 n n C18 H14 GWR sing 177 n n C23 H15 GWR sing 178 n n C25 H16 GWR sing 179 n n C29 H17 GWR sing 180 n n C31 H18 GWR sing 181 n n C32 H19 GWR sing 182 n n O06 H20 GWR sing 183 n n # _atom_sites.entry_id 7D4Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PTY A 1 801 801 PTY PTY . F 3 POV A 1 802 901 POV POV . G 4 Y01 A 1 803 1001 Y01 Y01 . H 5 ZN A 1 804 1101 ZN ZN . I 6 CA A 1 805 1201 CA CA . J 7 GWR A 1 806 1301 GWR LIG . K 2 PTY B 1 801 801 PTY PTY . L 3 POV B 1 802 901 POV POV . M 4 Y01 B 1 803 1001 Y01 Y01 . N 5 ZN B 1 804 1101 ZN ZN . O 6 CA B 1 805 1201 CA CA . P 7 GWR B 1 806 1301 GWR LIG . Q 2 PTY C 1 801 801 PTY PTY . R 3 POV C 1 802 901 POV POV . S 4 Y01 C 1 803 1001 Y01 Y01 . T 5 ZN C 1 804 1101 ZN ZN . U 6 CA C 1 805 1201 CA CA . V 7 GWR C 1 806 1301 GWR LIG . W 2 PTY D 1 801 801 PTY PTY . X 3 POV D 1 802 901 POV POV . Y 4 Y01 D 1 803 1001 Y01 Y01 . Z 5 ZN D 1 804 1101 ZN ZN . AA 6 CA D 1 805 1201 CA CA . BA 7 GWR D 1 806 1301 GWR LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 GWR . . . J 7 139.072 163.055 124.991 1 73.59 ? C13 GWR 806 A 1 HETATM 2 C C15 GWR . . . J 7 141.298 165.043 126.332 1 75.13 ? C15 GWR 806 A 1 HETATM 3 C C17 GWR . . . J 7 139.971 164.395 128.338 1 86.72 ? C17 GWR 806 A 1 HETATM 4 C C20 GWR . . . J 7 136.486 161.656 128.181 1 71.27 ? C20 GWR 806 A 1 HETATM 5 C C21 GWR . . . J 7 137.128 162.371 121.042 1 75.65 ? C21 GWR 806 A 1 HETATM 6 C C22 GWR . . . J 7 140.978 167.606 126.903 1 91.66 ? C22 GWR 806 A 1 HETATM 7 C C24 GWR . . . J 7 139.818 165.821 130.126 1 103.27 ? C24 GWR 806 A 1 HETATM 8 C C26 GWR . . . J 7 139.589 168.022 124.215 1 88.74 ? C26 GWR 806 A 1 HETATM 9 C C28 GWR . . . J 7 138.682 166.644 129.543 1 103.31 ? C28 GWR 806 A 1 HETATM 10 C C11 GWR . . . J 7 139.308 163.52 126.451 1 70.13 ? C11 GWR 806 A 1 HETATM 11 C C12 GWR . . . J 7 138.491 163.072 127.438 1 68.49 ? C12 GWR 806 A 1 HETATM 12 C C14 GWR . . . J 7 137.779 161.724 123.321 1 65.54 ? C14 GWR 806 A 1 HETATM 13 C C16 GWR . . . J 7 137.131 161.694 125.744 1 71.7 ? C16 GWR 806 A 1 HETATM 14 C C18 GWR . . . J 7 137.174 162.849 122.49 1 67.93 ? C18 GWR 806 A 1 HETATM 15 C C19 GWR . . . J 7 140.795 166.429 125.945 1 79.43 ? C19 GWR 806 A 1 HETATM 16 C C23 GWR . . . J 7 140.096 166.636 124.603 1 82.32 ? C23 GWR 806 A 1 HETATM 17 C C25 GWR . . . J 7 140.469 168.994 126.515 1 88.38 ? C25 GWR 806 A 1 HETATM 18 C C27 GWR . . . J 7 139.774 169.199 125.17 1 87.92 ? C27 GWR 806 A 1 HETATM 19 C C29 GWR . . . J 7 140.007 165.741 131.639 1 108.65 ? C29 GWR 806 A 1 HETATM 20 C C30 GWR . . . J 7 137.724 167.389 130.457 1 118.61 ? C30 GWR 806 A 1 HETATM 21 C C31 GWR . . . J 7 139.046 166.492 132.569 1 110.84 ? C31 GWR 806 A 1 HETATM 22 C C32 GWR . . . J 7 137.9 167.318 131.972 1 114.74 ? C32 GWR 806 A 1 HETATM 23 N N07 GWR . . . J 7 140.226 164.334 127.011 1 79.19 ? N07 GWR 806 A 1 HETATM 24 N N08 GWR . . . J 7 137.995 162.164 124.686 1 67.11 ? N08 GWR 806 A 1 HETATM 25 N N09 GWR . . . J 7 137.357 162.131 127.121 1 66.46 ? N09 GWR 806 A 1 HETATM 26 N N10 GWR . . . J 7 138.901 163.613 128.597 1 81.68 ? N10 GWR 806 A 1 HETATM 27 O O03 GWR . . . J 7 140.697 165.14 129.278 1 99.57 ? O03 GWR 806 A 1 HETATM 28 O O04 GWR . . . J 7 139.78 163.433 124.12 1 78.99 ? O04 GWR 806 A 1 HETATM 29 O O05 GWR . . . J 7 136.237 160.953 125.504 1 80.49 ? O05 GWR 806 A 1 HETATM 30 O O06 GWR . . . J 7 138.387 162.557 120.458 1 85.36 ? O06 GWR 806 A 1 HETATM 31 CL CL1 GWR . . . J 7 139.175 170.815 124.708 1 128.29 ? CL1 GWR 806 A 1 HETATM 32 CL CL2 GWR . . . J 7 136.392 168.348 129.754 1 157.46 ? CL2 GWR 806 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #