data_7D4U # _model_server_result.job_id V7kzEVaNNlY5anLzTaZloQ _model_server_result.datetime_utc '2024-11-13 04:13:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7D4U # _exptl.entry_id 7D4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D4U _cell.length_a 68.864 _cell.length_b 118.221 _cell.length_c 102.381 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7D4U _atom_sites.fract_transf_matrix[1][1] 0.014521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 401 ATP ATP . C 2 ATP A 1 402 402 ATP ATP . D 3 HOH A 1 501 20 HOH HOH . D 3 HOH A 2 502 194 HOH HOH . D 3 HOH A 3 503 97 HOH HOH . D 3 HOH A 4 504 187 HOH HOH . D 3 HOH A 5 505 163 HOH HOH . D 3 HOH A 6 506 28 HOH HOH . D 3 HOH A 7 507 128 HOH HOH . D 3 HOH A 8 508 123 HOH HOH . D 3 HOH A 9 509 69 HOH HOH . D 3 HOH A 10 510 164 HOH HOH . D 3 HOH A 11 511 16 HOH HOH . D 3 HOH A 12 512 14 HOH HOH . D 3 HOH A 13 513 114 HOH HOH . D 3 HOH A 14 514 193 HOH HOH . D 3 HOH A 15 515 195 HOH HOH . D 3 HOH A 16 516 188 HOH HOH . D 3 HOH A 17 517 112 HOH HOH . D 3 HOH A 18 518 205 HOH HOH . D 3 HOH A 19 519 129 HOH HOH . D 3 HOH A 20 520 37 HOH HOH . D 3 HOH A 21 521 1 HOH HOH . D 3 HOH A 22 522 3 HOH HOH . D 3 HOH A 23 523 197 HOH HOH . D 3 HOH A 24 524 189 HOH HOH . D 3 HOH A 25 525 158 HOH HOH . D 3 HOH A 26 526 198 HOH HOH . D 3 HOH A 27 527 113 HOH HOH . D 3 HOH A 28 528 124 HOH HOH . D 3 HOH A 29 529 167 HOH HOH . D 3 HOH A 30 530 127 HOH HOH . D 3 HOH A 31 531 184 HOH HOH . D 3 HOH A 32 532 108 HOH HOH . D 3 HOH A 33 533 161 HOH HOH . D 3 HOH A 34 534 53 HOH HOH . D 3 HOH A 35 535 86 HOH HOH . D 3 HOH A 36 536 119 HOH HOH . D 3 HOH A 37 537 9 HOH HOH . D 3 HOH A 38 538 200 HOH HOH . D 3 HOH A 39 539 7 HOH HOH . D 3 HOH A 40 540 12 HOH HOH . D 3 HOH A 41 541 133 HOH HOH . D 3 HOH A 42 542 98 HOH HOH . D 3 HOH A 43 543 64 HOH HOH . D 3 HOH A 44 544 49 HOH HOH . D 3 HOH A 45 545 26 HOH HOH . D 3 HOH A 46 546 159 HOH HOH . D 3 HOH A 47 547 160 HOH HOH . D 3 HOH A 48 548 21 HOH HOH . D 3 HOH A 49 549 34 HOH HOH . D 3 HOH A 50 550 175 HOH HOH . D 3 HOH A 51 551 51 HOH HOH . D 3 HOH A 52 552 183 HOH HOH . D 3 HOH A 53 553 145 HOH HOH . D 3 HOH A 54 554 196 HOH HOH . D 3 HOH A 55 555 70 HOH HOH . D 3 HOH A 56 556 142 HOH HOH . D 3 HOH A 57 557 93 HOH HOH . D 3 HOH A 58 558 95 HOH HOH . D 3 HOH A 59 559 13 HOH HOH . D 3 HOH A 60 560 82 HOH HOH . D 3 HOH A 61 561 41 HOH HOH . D 3 HOH A 62 562 75 HOH HOH . D 3 HOH A 63 563 115 HOH HOH . D 3 HOH A 64 564 135 HOH HOH . D 3 HOH A 65 565 91 HOH HOH . D 3 HOH A 66 566 23 HOH HOH . D 3 HOH A 67 567 35 HOH HOH . D 3 HOH A 68 568 30 HOH HOH . D 3 HOH A 69 569 17 HOH HOH . D 3 HOH A 70 570 96 HOH HOH . D 3 HOH A 71 571 144 HOH HOH . D 3 HOH A 72 572 5 HOH HOH . D 3 HOH A 73 573 4 HOH HOH . D 3 HOH A 74 574 27 HOH HOH . D 3 HOH A 75 575 182 HOH HOH . D 3 HOH A 76 576 192 HOH HOH . D 3 HOH A 77 577 24 HOH HOH . D 3 HOH A 78 578 36 HOH HOH . D 3 HOH A 79 579 174 HOH HOH . D 3 HOH A 80 580 176 HOH HOH . D 3 HOH A 81 581 170 HOH HOH . D 3 HOH A 82 582 109 HOH HOH . D 3 HOH A 83 583 141 HOH HOH . D 3 HOH A 84 584 85 HOH HOH . D 3 HOH A 85 585 169 HOH HOH . D 3 HOH A 86 586 140 HOH HOH . D 3 HOH A 87 587 38 HOH HOH . D 3 HOH A 88 588 106 HOH HOH . D 3 HOH A 89 589 178 HOH HOH . D 3 HOH A 90 590 80 HOH HOH . D 3 HOH A 91 591 180 HOH HOH . D 3 HOH A 92 592 83 HOH HOH . D 3 HOH A 93 593 116 HOH HOH . D 3 HOH A 94 594 92 HOH HOH . D 3 HOH A 95 595 166 HOH HOH . D 3 HOH A 96 596 202 HOH HOH . D 3 HOH A 97 597 19 HOH HOH . D 3 HOH A 98 598 157 HOH HOH . D 3 HOH A 99 599 8 HOH HOH . D 3 HOH A 100 600 29 HOH HOH . D 3 HOH A 101 601 56 HOH HOH . D 3 HOH A 102 602 60 HOH HOH . D 3 HOH A 103 603 6 HOH HOH . D 3 HOH A 104 604 110 HOH HOH . D 3 HOH A 105 605 39 HOH HOH . D 3 HOH A 106 606 146 HOH HOH . D 3 HOH A 107 607 42 HOH HOH . D 3 HOH A 108 608 199 HOH HOH . D 3 HOH A 109 609 31 HOH HOH . D 3 HOH A 110 610 32 HOH HOH . D 3 HOH A 111 611 130 HOH HOH . D 3 HOH A 112 612 179 HOH HOH . D 3 HOH A 113 613 67 HOH HOH . D 3 HOH A 114 614 57 HOH HOH . D 3 HOH A 115 615 59 HOH HOH . D 3 HOH A 116 616 173 HOH HOH . D 3 HOH A 117 617 203 HOH HOH . D 3 HOH A 118 618 201 HOH HOH . D 3 HOH A 119 619 148 HOH HOH . D 3 HOH A 120 620 105 HOH HOH . D 3 HOH A 121 621 50 HOH HOH . D 3 HOH A 122 622 74 HOH HOH . D 3 HOH A 123 623 138 HOH HOH . D 3 HOH A 124 624 89 HOH HOH . D 3 HOH A 125 625 147 HOH HOH . D 3 HOH A 126 626 165 HOH HOH . D 3 HOH A 127 627 204 HOH HOH . D 3 HOH A 128 628 76 HOH HOH . D 3 HOH A 129 629 191 HOH HOH . D 3 HOH A 130 630 65 HOH HOH . D 3 HOH A 131 631 100 HOH HOH . D 3 HOH A 132 632 185 HOH HOH . D 3 HOH A 133 633 22 HOH HOH . D 3 HOH A 134 634 61 HOH HOH . D 3 HOH A 135 635 206 HOH HOH . D 3 HOH A 136 636 40 HOH HOH . D 3 HOH A 137 637 94 HOH HOH . D 3 HOH A 138 638 72 HOH HOH . D 3 HOH A 139 639 137 HOH HOH . D 3 HOH A 140 640 125 HOH HOH . D 3 HOH A 141 641 2 HOH HOH . D 3 HOH A 142 642 111 HOH HOH . D 3 HOH A 143 643 52 HOH HOH . D 3 HOH A 144 644 118 HOH HOH . D 3 HOH A 145 645 120 HOH HOH . D 3 HOH A 146 646 81 HOH HOH . D 3 HOH A 147 647 68 HOH HOH . D 3 HOH A 148 648 48 HOH HOH . D 3 HOH A 149 649 149 HOH HOH . D 3 HOH A 150 650 172 HOH HOH . D 3 HOH A 151 651 186 HOH HOH . D 3 HOH A 152 652 10 HOH HOH . D 3 HOH A 153 653 15 HOH HOH . D 3 HOH A 154 654 168 HOH HOH . D 3 HOH A 155 655 90 HOH HOH . D 3 HOH A 156 656 11 HOH HOH . D 3 HOH A 157 657 62 HOH HOH . D 3 HOH A 158 658 63 HOH HOH . D 3 HOH A 159 659 162 HOH HOH . D 3 HOH A 160 660 99 HOH HOH . D 3 HOH A 161 661 44 HOH HOH . D 3 HOH A 162 662 18 HOH HOH . D 3 HOH A 163 663 181 HOH HOH . D 3 HOH A 164 664 150 HOH HOH . D 3 HOH A 165 665 171 HOH HOH . D 3 HOH A 166 666 73 HOH HOH . D 3 HOH A 167 667 131 HOH HOH . D 3 HOH A 168 668 71 HOH HOH . D 3 HOH A 169 669 58 HOH HOH . D 3 HOH A 170 670 46 HOH HOH . D 3 HOH A 171 671 43 HOH HOH . D 3 HOH A 172 672 25 HOH HOH . D 3 HOH A 173 673 156 HOH HOH . D 3 HOH A 174 674 190 HOH HOH . D 3 HOH A 175 675 117 HOH HOH . D 3 HOH A 176 676 143 HOH HOH . D 3 HOH A 177 677 107 HOH HOH . D 3 HOH A 178 678 84 HOH HOH . D 3 HOH A 179 679 47 HOH HOH . D 3 HOH A 180 680 153 HOH HOH . D 3 HOH A 181 681 87 HOH HOH . D 3 HOH A 182 682 104 HOH HOH . D 3 HOH A 183 683 66 HOH HOH . D 3 HOH A 184 684 45 HOH HOH . D 3 HOH A 185 685 102 HOH HOH . D 3 HOH A 186 686 126 HOH HOH . D 3 HOH A 187 687 151 HOH HOH . D 3 HOH A 188 688 122 HOH HOH . D 3 HOH A 189 689 121 HOH HOH . D 3 HOH A 190 690 33 HOH HOH . D 3 HOH A 191 691 101 HOH HOH . D 3 HOH A 192 692 152 HOH HOH . D 3 HOH A 193 693 139 HOH HOH . D 3 HOH A 194 694 132 HOH HOH . D 3 HOH A 195 695 154 HOH HOH . D 3 HOH A 196 696 136 HOH HOH . D 3 HOH A 197 697 54 HOH HOH . D 3 HOH A 198 698 103 HOH HOH . D 3 HOH A 199 699 177 HOH HOH . D 3 HOH A 200 700 77 HOH HOH . D 3 HOH A 201 701 155 HOH HOH . D 3 HOH A 202 702 88 HOH HOH . D 3 HOH A 203 703 55 HOH HOH . D 3 HOH A 204 704 134 HOH HOH . D 3 HOH A 205 705 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 4.183 24.28 45.226 1 70.19 ? PG ATP 402 A 1 HETATM 2 O O1G ATP . . . C 2 5.533 23.967 44.628 1 74.11 ? O1G ATP 402 A 1 HETATM 3 O O2G ATP . . . C 2 3.131 23.244 44.918 1 71.27 ? O2G ATP 402 A 1 HETATM 4 O O3G ATP . . . C 2 4.231 24.705 46.674 1 71.4 ? O3G ATP 402 A 1 HETATM 5 P PB ATP . . . C 2 2.219 26.058 44.118 1 44.01 ? PB ATP 402 A 1 HETATM 6 O O1B ATP . . . C 2 1.402 24.858 43.703 1 48.4 ? O1B ATP 402 A 1 HETATM 7 O O2B ATP . . . C 2 1.732 26.951 45.234 1 32.49 ? O2B ATP 402 A 1 HETATM 8 O O3B ATP . . . C 2 3.739 25.618 44.44 1 61.86 ? O3B ATP 402 A 1 HETATM 9 P PA ATP . . . C 2 2.699 28.536 42.908 1 32.71 ? PA ATP 402 A 1 HETATM 10 O O1A ATP . . . C 2 1.49 29.184 43.54 1 24.85 ? O1A ATP 402 A 1 HETATM 11 O O2A ATP . . . C 2 3.201 29.02 41.569 1 38.01 ? O2A ATP 402 A 1 HETATM 12 O O3A ATP . . . C 2 2.446 26.95 42.798 1 42.21 ? O3A ATP 402 A 1 HETATM 13 O O5' ATP . . . C 2 3.916 28.577 43.958 1 30.29 ? O5' ATP 402 A 1 HETATM 14 C C5' ATP . . . C 2 4.989 29.499 43.799 1 27.14 ? C5' ATP 402 A 1 HETATM 15 C C4' ATP . . . C 2 5.756 29.597 45.11 1 29.24 ? C4' ATP 402 A 1 HETATM 16 O O4' ATP . . . C 2 5.925 30.977 45.441 1 35.77 ? O4' ATP 402 A 1 HETATM 17 C C3' ATP . . . C 2 5.001 28.947 46.256 1 31.22 ? C3' ATP 402 A 1 HETATM 18 O O3' ATP . . . C 2 5.629 27.717 46.628 1 31.63 ? O3' ATP 402 A 1 HETATM 19 C C2' ATP . . . C 2 5.086 29.937 47.396 1 31.57 ? C2' ATP 402 A 1 HETATM 20 O O2' ATP . . . C 2 6.132 29.522 48.275 1 29.2 ? O2' ATP 402 A 1 HETATM 21 C C1' ATP . . . C 2 5.446 31.266 46.755 1 31.75 ? C1' ATP 402 A 1 HETATM 22 N N9 ATP . . . C 2 4.232 32.109 46.614 1 35.13 ? N9 ATP 402 A 1 HETATM 23 C C8 ATP . . . C 2 3.352 32.041 45.597 1 32.01 ? C8 ATP 402 A 1 HETATM 24 N N7 ATP . . . C 2 2.346 32.938 45.752 1 29.1 ? N7 ATP 402 A 1 HETATM 25 C C5 ATP . . . C 2 2.576 33.605 46.897 1 31.06 ? C5 ATP 402 A 1 HETATM 26 C C6 ATP . . . C 2 1.901 34.687 47.651 1 34.79 ? C6 ATP 402 A 1 HETATM 27 N N6 ATP . . . C 2 0.754 35.246 47.198 1 30.4 ? N6 ATP 402 A 1 HETATM 28 N N1 ATP . . . C 2 2.471 35.096 48.806 1 35.2 ? N1 ATP 402 A 1 HETATM 29 C C2 ATP . . . C 2 3.612 34.547 49.265 1 31.6 ? C2 ATP 402 A 1 HETATM 30 N N3 ATP . . . C 2 4.276 33.563 48.632 1 28.96 ? N3 ATP 402 A 1 HETATM 31 C C4 ATP . . . C 2 3.818 33.054 47.464 1 31.5 ? C4 ATP 402 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #