data_7D5O # _model_server_result.job_id JCJUHQVavo-wyd-b90aknw _model_server_result.datetime_utc '2025-01-10 01:55:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7D5O # _exptl.entry_id 7D5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.448 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]prop-2-en-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.64 _cell.angle_beta 90.61 _cell.angle_gamma 89.82 _cell.entry_id 7D5O _cell.length_a 41.969 _cell.length_b 63.184 _cell.length_c 73.137 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H22 N6 O3' _chem_comp.formula_weight 418.448 _chem_comp.id TZ0 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C0N O01 TZ0 sing 358 n n O01 C0E TZ0 sing 359 n n C0E C0C TZ0 doub 360 n y C0E C0O TZ0 sing 361 n y C0C C0D TZ0 sing 362 n y C0O C0J TZ0 doub 363 n y C0U O02 TZ0 sing 364 n n C0D O02 TZ0 sing 365 n n C0D C0R TZ0 doub 366 n y O03 C0P TZ0 doub 367 n n C0J C0R TZ0 sing 368 n y C0J C0S TZ0 sing 369 n n C0T N07 TZ0 sing 370 n n C0T C0Q TZ0 sing 371 n n C0S C0H TZ0 trip 372 n n C0P N07 TZ0 sing 373 n n C0P C0M TZ0 sing 374 n n C0V C0M TZ0 doub 375 n n C0H C0G TZ0 sing 376 n n N07 C0I TZ0 sing 377 n n C0Q C0K TZ0 sing 378 n n N09 C0G TZ0 doub 379 n y N09 N04 TZ0 sing 380 n y C0G C0A TZ0 sing 381 n y N04 C0K TZ0 sing 382 n n N04 C0B TZ0 sing 383 n y C0K C0I TZ0 sing 384 n n C0A C0B TZ0 doub 385 n y C0A C0F TZ0 sing 386 n y N05 C0F TZ0 sing 387 n n C0B N08 TZ0 sing 388 n y C0F N06 TZ0 doub 389 n y N08 C0L TZ0 doub 390 n y N06 C0L TZ0 sing 391 n y C0N H1 TZ0 sing 392 n n C0N H2 TZ0 sing 393 n n C0N H3 TZ0 sing 394 n n C0O H4 TZ0 sing 395 n n C0C H5 TZ0 sing 396 n n C0U H6 TZ0 sing 397 n n C0U H7 TZ0 sing 398 n n C0U H8 TZ0 sing 399 n n C0R H9 TZ0 sing 400 n n N05 H10 TZ0 sing 401 n n N05 H11 TZ0 sing 402 n n C0L H12 TZ0 sing 403 n n C0K H13 TZ0 sing 404 n n C0I H14 TZ0 sing 405 n n C0I H15 TZ0 sing 406 n n C0Q H16 TZ0 sing 407 n n C0Q H17 TZ0 sing 408 n n C0T H18 TZ0 sing 409 n n C0T H19 TZ0 sing 410 n n C0M H20 TZ0 sing 411 n n C0V H21 TZ0 sing 412 n n C0V H22 TZ0 sing 413 n n # _atom_sites.entry_id 7D5O _atom_sites.fract_transf_matrix[1][1] 0.023827 _atom_sites.fract_transf_matrix[1][2] -0.000077 _atom_sites.fract_transf_matrix[1][3] 0.000242 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015827 _atom_sites.fract_transf_matrix[2][3] 0.002973 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TZ0 B 1 601 601 TZ0 DRG . D 2 TZ0 A 1 601 601 TZ0 DRG . E 3 HOH B 1 701 56 HOH HOH . E 3 HOH B 2 702 9 HOH HOH . E 3 HOH B 3 703 37 HOH HOH . E 3 HOH B 4 704 35 HOH HOH . E 3 HOH B 5 705 11 HOH HOH . E 3 HOH B 6 706 22 HOH HOH . E 3 HOH B 7 707 49 HOH HOH . E 3 HOH B 8 708 40 HOH HOH . E 3 HOH B 9 709 7 HOH HOH . E 3 HOH B 10 710 28 HOH HOH . E 3 HOH B 11 711 10 HOH HOH . E 3 HOH B 12 712 36 HOH HOH . E 3 HOH B 13 713 59 HOH HOH . E 3 HOH B 14 714 6 HOH HOH . E 3 HOH B 15 715 43 HOH HOH . E 3 HOH B 16 716 45 HOH HOH . E 3 HOH B 17 717 16 HOH HOH . E 3 HOH B 18 718 34 HOH HOH . E 3 HOH B 19 719 46 HOH HOH . E 3 HOH B 20 720 44 HOH HOH . E 3 HOH B 21 721 13 HOH HOH . E 3 HOH B 22 722 31 HOH HOH . E 3 HOH B 23 723 42 HOH HOH . E 3 HOH B 24 724 47 HOH HOH . E 3 HOH B 25 725 58 HOH HOH . E 3 HOH B 26 726 14 HOH HOH . E 3 HOH B 27 727 30 HOH HOH . E 3 HOH B 28 728 38 HOH HOH . E 3 HOH B 29 729 41 HOH HOH . E 3 HOH B 30 730 27 HOH HOH . E 3 HOH B 31 731 51 HOH HOH . E 3 HOH B 32 732 53 HOH HOH . F 3 HOH A 1 701 52 HOH HOH . F 3 HOH A 2 702 48 HOH HOH . F 3 HOH A 3 703 18 HOH HOH . F 3 HOH A 4 704 20 HOH HOH . F 3 HOH A 5 705 3 HOH HOH . F 3 HOH A 6 706 29 HOH HOH . F 3 HOH A 7 707 39 HOH HOH . F 3 HOH A 8 708 19 HOH HOH . F 3 HOH A 9 709 57 HOH HOH . F 3 HOH A 10 710 21 HOH HOH . F 3 HOH A 11 711 24 HOH HOH . F 3 HOH A 12 712 8 HOH HOH . F 3 HOH A 13 713 1 HOH HOH . F 3 HOH A 14 714 12 HOH HOH . F 3 HOH A 15 715 5 HOH HOH . F 3 HOH A 16 716 54 HOH HOH . F 3 HOH A 17 717 23 HOH HOH . F 3 HOH A 18 718 17 HOH HOH . F 3 HOH A 19 719 4 HOH HOH . F 3 HOH A 20 720 55 HOH HOH . F 3 HOH A 21 721 15 HOH HOH . F 3 HOH A 22 722 26 HOH HOH . F 3 HOH A 23 723 25 HOH HOH . F 3 HOH A 24 724 32 HOH HOH . F 3 HOH A 25 725 33 HOH HOH . F 3 HOH A 26 726 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C0N TZ0 . . . D 2 12.154 29.894 1.725 1 64.95 ? C0N TZ0 601 A 1 HETATM 2 O O01 TZ0 . . . D 2 11.133 30.535 2.48 1 78.96 ? O01 TZ0 601 A 1 HETATM 3 C C0E TZ0 . . . D 2 11.469 31.816 2.764 1 66.73 ? C0E TZ0 601 A 1 HETATM 4 C C0O TZ0 . . . D 2 10.518 32.667 3.301 1 62.56 ? C0O TZ0 601 A 1 HETATM 5 C C0C TZ0 . . . D 2 12.749 32.275 2.511 1 61.79 ? C0C TZ0 601 A 1 HETATM 6 C C0D TZ0 . . . D 2 13.066 33.59 2.806 1 72.96 ? C0D TZ0 601 A 1 HETATM 7 O O02 TZ0 . . . D 2 14.315 34.045 2.569 1 75.42 ? O02 TZ0 601 A 1 HETATM 8 C C0U TZ0 . . . D 2 14.964 33.169 1.662 1 64.08 ? C0U TZ0 601 A 1 HETATM 9 C C0R TZ0 . . . D 2 12.115 34.444 3.345 1 72.14 ? C0R TZ0 601 A 1 HETATM 10 C C0J TZ0 . . . D 2 10.834 33.981 3.581 1 61.57 ? C0J TZ0 601 A 1 HETATM 11 C C0S TZ0 . . . D 2 9.871 34.792 4.123 1 55.83 ? C0S TZ0 601 A 1 HETATM 12 C C0H TZ0 . . . D 2 9.157 35.357 4.508 1 56.01 ? C0H TZ0 601 A 1 HETATM 13 C C0G TZ0 . . . D 2 8.12 36.135 5.05 1 59.86 ? C0G TZ0 601 A 1 HETATM 14 N N09 TZ0 . . . D 2 8.334 37.241 5.737 1 67.65 ? N09 TZ0 601 A 1 HETATM 15 C C0A TZ0 . . . D 2 6.811 35.915 4.984 1 61.91 ? C0A TZ0 601 A 1 HETATM 16 C C0F TZ0 . . . D 2 5.994 34.992 4.459 1 58.29 ? C0F TZ0 601 A 1 HETATM 17 N N05 TZ0 . . . D 2 6.512 33.97 3.794 1 56.77 ? N05 TZ0 601 A 1 HETATM 18 N N06 TZ0 . . . D 2 4.677 35.085 4.589 1 46.78 ? N06 TZ0 601 A 1 HETATM 19 C C0L TZ0 . . . D 2 4.152 36.154 5.283 1 50.62 ? C0L TZ0 601 A 1 HETATM 20 N N08 TZ0 . . . D 2 5.006 37.087 5.822 1 47.03 ? N08 TZ0 601 A 1 HETATM 21 C C0B TZ0 . . . D 2 6.314 36.936 5.657 1 47.85 ? C0B TZ0 601 A 1 HETATM 22 N N04 TZ0 . . . D 2 7.321 37.687 6.07 1 63.41 ? N04 TZ0 601 A 1 HETATM 23 C C0K TZ0 . . . D 2 7.025 38.902 6.851 1 51.89 ? C0K TZ0 601 A 1 HETATM 24 C C0I TZ0 . . . D 2 8.035 39.989 6.622 1 57.97 ? C0I TZ0 601 A 1 HETATM 25 C C0Q TZ0 . . . D 2 7.11 38.615 8.338 1 44.61 ? C0Q TZ0 601 A 1 HETATM 26 C C0T TZ0 . . . D 2 8.523 38.954 8.742 1 43.94 ? C0T TZ0 601 A 1 HETATM 27 N N07 TZ0 . . . D 2 9.063 39.754 7.633 1 57.16 ? N07 TZ0 601 A 1 HETATM 28 C C0P TZ0 . . . D 2 10.305 40.223 7.536 1 72.29 ? C0P TZ0 601 A 1 HETATM 29 O O03 TZ0 . . . D 2 11.176 40.04 8.378 1 87.29 ? O03 TZ0 601 A 1 HETATM 30 C C0M TZ0 . . . D 2 10.589 41.027 6.277 1 84.68 ? C0M TZ0 601 A 1 HETATM 31 C C0V TZ0 . . . D 2 12.019 41.549 6.162 1 96.91 ? C0V TZ0 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #