data_7D61 # _model_server_result.job_id sI5_CZMld4ajoG-eJGuWpA _model_server_result.datetime_utc '2024-11-21 14:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":303}' # _entry.id 7D61 # _exptl.entry_id 7D61 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 423.458 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHATE _entity.pdbx_number_of_molecules 55 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D61 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N ? 2 WA N N ? 2 XA N N ? 2 YA N N ? 2 ZA N N ? 2 AB N N ? 2 BB N N ? 2 CB N N ? 2 DB N N ? 2 EB N N ? 2 FB N N ? 2 GB N N ? 2 HB N N ? 2 IB N N ? 2 JB N N ? 2 KB N N ? 2 LB N N ? 2 MB N N ? 2 NB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 41 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 43 A CYS 43 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 142 A CYS 142 1_555 A SG CYS 149 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 41 B CYS 41 1_555 B SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 43 B CYS 43 1_555 B SG CYS 158 B CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 142 B CYS 142 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 41 C CYS 41 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 C SG CYS 43 C CYS 43 1_555 C SG CYS 158 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 142 C CYS 142 1_555 C SG CYS 149 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 D SG CYS 41 D CYS 41 1_555 D SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 D SG CYS 43 D CYS 43 1_555 D SG CYS 158 D CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 D SG CYS 142 D CYS 142 1_555 D SG CYS 149 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 E SG CYS 41 E CYS 41 1_555 E SG CYS 127 E CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 E SG CYS 43 E CYS 43 1_555 E SG CYS 158 E CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 E SG CYS 142 E CYS 142 1_555 E SG CYS 149 E CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 F SG CYS 41 F CYS 41 1_555 F SG CYS 127 F CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf17 F SG CYS 43 F CYS 43 1_555 F SG CYS 158 F CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 F SG CYS 142 F CYS 142 1_555 F SG CYS 149 F CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf19 G SG CYS 41 G CYS 41 1_555 G SG CYS 127 G CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf20 G SG CYS 43 G CYS 43 1_555 G SG CYS 158 G CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 G SG CYS 142 G CYS 142 1_555 G SG CYS 149 G CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf22 H SG CYS 41 H CYS 41 1_555 H SG CYS 127 H CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf23 H SG CYS 43 H CYS 43 1_555 H SG CYS 158 H CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf24 H SG CYS 142 H CYS 142 1_555 H SG CYS 149 H CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf25 I SG CYS 41 I CYS 41 1_555 I SG CYS 127 I CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf26 I SG CYS 43 I CYS 43 1_555 I SG CYS 158 I CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 I SG CYS 142 I CYS 142 1_555 I SG CYS 149 I CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf28 J SG CYS 41 J CYS 41 1_555 J SG CYS 127 J CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf29 J SG CYS 43 J CYS 43 1_555 J SG CYS 158 J CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf30 J SG CYS 142 J CYS 142 1_555 J SG CYS 149 J CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf31 K SG CYS 41 K CYS 41 1_555 K SG CYS 127 K CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf32 K SG CYS 43 K CYS 43 1_555 K SG CYS 158 K CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf33 K SG CYS 142 K CYS 142 1_555 K SG CYS 149 K CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C19 H36 O8 P -1' _chem_comp.formula_weight 423.458 _chem_comp.id PA8 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PA8 sing 235 n n O2 P1 PA8 doub 236 n n P1 O3 PA8 sing 237 n n P1 O4 PA8 sing 238 n n O3 H1 PA8 sing 239 n n O4 C1 PA8 sing 240 n n C1 C2 PA8 sing 241 n n C1 H2 PA8 sing 242 n n C1 H3 PA8 sing 243 n n C2 C3 PA8 sing 244 n n C2 O7 PA8 sing 245 n n C2 H4 PA8 sing 246 n n C3 O5 PA8 sing 247 n n C3 H5 PA8 sing 248 n n C3 H6 PA8 sing 249 n n O5 C4 PA8 sing 250 n n C4 O6 PA8 doub 251 n n C4 C5 PA8 sing 252 n n C5 C6 PA8 sing 253 n n C5 H7 PA8 sing 254 n n C5 H8 PA8 sing 255 n n C6 C7 PA8 sing 256 n n C6 H9 PA8 sing 257 n n C6 H10 PA8 sing 258 n n C7 C8 PA8 sing 259 n n C7 H11 PA8 sing 260 n n C7 H12 PA8 sing 261 n n C8 C9 PA8 sing 262 n n C8 H13 PA8 sing 263 n n C8 H14 PA8 sing 264 n n C9 C10 PA8 sing 265 n n C9 H15 PA8 sing 266 n n C9 H16 PA8 sing 267 n n C10 C11 PA8 sing 268 n n C10 H17 PA8 sing 269 n n C10 H18 PA8 sing 270 n n C11 H19 PA8 sing 271 n n C11 H20 PA8 sing 272 n n C11 H21 PA8 sing 273 n n O7 C12 PA8 sing 274 n n C12 O8 PA8 doub 275 n n C12 C13 PA8 sing 276 n n C13 C14 PA8 sing 277 n n C13 H22 PA8 sing 278 n n C13 H23 PA8 sing 279 n n C14 C15 PA8 sing 280 n n C14 H24 PA8 sing 281 n n C14 H25 PA8 sing 282 n n C15 C16 PA8 sing 283 n n C15 H26 PA8 sing 284 n n C15 H27 PA8 sing 285 n n C16 C17 PA8 sing 286 n n C16 H28 PA8 sing 287 n n C16 H29 PA8 sing 288 n n C17 C18 PA8 sing 289 n n C17 H30 PA8 sing 290 n n C17 H31 PA8 sing 291 n n C18 C19 PA8 sing 292 n n C18 H32 PA8 sing 293 n n C18 H33 PA8 sing 294 n n C19 H34 PA8 sing 295 n n C19 H35 PA8 sing 296 n n C19 H36 PA8 sing 297 n n # _atom_sites.entry_id 7D61 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 2 PA8 A 1 301 301 PA8 PA8 . M 2 PA8 A 1 302 401 PA8 PA8 . N 2 PA8 A 1 303 501 PA8 PA8 . O 2 PA8 A 1 304 601 PA8 PA8 . P 2 PA8 A 1 305 701 PA8 PA8 . Q 2 PA8 B 1 301 301 PA8 PA8 . R 2 PA8 B 1 302 401 PA8 PA8 . S 2 PA8 B 1 303 501 PA8 PA8 . T 2 PA8 B 1 304 601 PA8 PA8 . U 2 PA8 B 1 305 701 PA8 PA8 . V 2 PA8 C 1 301 301 PA8 PA8 . W 2 PA8 C 1 302 401 PA8 PA8 . X 2 PA8 C 1 303 501 PA8 PA8 . Y 2 PA8 C 1 304 601 PA8 PA8 . Z 2 PA8 C 1 305 701 PA8 PA8 . AA 2 PA8 D 1 301 301 PA8 PA8 . BA 2 PA8 D 1 302 401 PA8 PA8 . CA 2 PA8 D 1 303 501 PA8 PA8 . DA 2 PA8 D 1 304 601 PA8 PA8 . EA 2 PA8 D 1 305 701 PA8 PA8 . FA 2 PA8 E 1 301 301 PA8 PA8 . GA 2 PA8 E 1 302 401 PA8 PA8 . HA 2 PA8 E 1 303 501 PA8 PA8 . IA 2 PA8 E 1 304 601 PA8 PA8 . JA 2 PA8 E 1 305 701 PA8 PA8 . KA 2 PA8 F 1 301 301 PA8 PA8 . LA 2 PA8 F 1 302 401 PA8 PA8 . MA 2 PA8 F 1 303 501 PA8 PA8 . NA 2 PA8 F 1 304 601 PA8 PA8 . OA 2 PA8 F 1 305 701 PA8 PA8 . PA 2 PA8 G 1 301 301 PA8 PA8 . QA 2 PA8 G 1 302 401 PA8 PA8 . RA 2 PA8 G 1 303 501 PA8 PA8 . SA 2 PA8 G 1 304 601 PA8 PA8 . TA 2 PA8 G 1 305 701 PA8 PA8 . UA 2 PA8 H 1 301 301 PA8 PA8 . VA 2 PA8 H 1 302 401 PA8 PA8 . WA 2 PA8 H 1 303 501 PA8 PA8 . XA 2 PA8 H 1 304 601 PA8 PA8 . YA 2 PA8 H 1 305 701 PA8 PA8 . ZA 2 PA8 I 1 301 301 PA8 PA8 . AB 2 PA8 I 1 302 401 PA8 PA8 . BB 2 PA8 I 1 303 501 PA8 PA8 . CB 2 PA8 I 1 304 601 PA8 PA8 . DB 2 PA8 I 1 305 701 PA8 PA8 . EB 2 PA8 J 1 301 301 PA8 PA8 . FB 2 PA8 J 1 302 401 PA8 PA8 . GB 2 PA8 J 1 303 501 PA8 PA8 . HB 2 PA8 J 1 304 601 PA8 PA8 . IB 2 PA8 J 1 305 701 PA8 PA8 . JB 2 PA8 K 1 301 301 PA8 PA8 . KB 2 PA8 K 1 302 401 PA8 PA8 . LB 2 PA8 K 1 303 501 PA8 PA8 . MB 2 PA8 K 1 304 601 PA8 PA8 . NB 2 PA8 K 1 305 701 PA8 PA8 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PA8 . . . X 2 230.871 168.312 175.364 1 74.17 ? O1 PA8 303 C 1 HETATM 2 O O2 PA8 . . . X 2 232.616 167.437 173.862 1 74.17 ? O2 PA8 303 C 1 HETATM 3 P P1 PA8 . . . X 2 232.359 168.136 175.176 1 74.17 ? P1 PA8 303 C 1 HETATM 4 O O3 PA8 . . . X 2 233.028 169.489 175.168 1 74.17 ? O3 PA8 303 C 1 HETATM 5 O O4 PA8 . . . X 2 232.964 167.229 176.412 1 74.17 ? O4 PA8 303 C 1 HETATM 6 C C1 PA8 . . . X 2 234.335 167.289 176.683 1 74.17 ? C1 PA8 303 C 1 HETATM 7 C C2 PA8 . . . X 2 234.689 166.113 177.59 1 74.17 ? C2 PA8 303 C 1 HETATM 8 C C3 PA8 . . . X 2 236.014 165.499 177.143 1 74.17 ? C3 PA8 303 C 1 HETATM 9 O O5 PA8 . . . X 2 236.93 165.577 178.196 1 74.17 ? O5 PA8 303 C 1 HETATM 10 C C4 PA8 . . . X 2 237.129 164.368 178.87 1 74.17 ? C4 PA8 303 C 1 HETATM 11 O O6 PA8 . . . X 2 236.298 163.964 179.609 1 74.17 ? O6 PA8 303 C 1 HETATM 12 C C5 PA8 . . . X 2 238.412 163.567 178.668 1 74.17 ? C5 PA8 303 C 1 HETATM 13 C C6 PA8 . . . X 2 238.639 162.571 179.803 1 74.17 ? C6 PA8 303 C 1 HETATM 14 C C7 PA8 . . . X 2 239.884 161.713 179.595 1 74.17 ? C7 PA8 303 C 1 HETATM 15 O O7 PA8 . . . X 2 234.79 166.553 178.916 1 74.17 ? O7 PA8 303 C 1 HETATM 16 C C12 PA8 . . . X 2 233.662 166.309 179.715 1 74.17 ? C12 PA8 303 C 1 HETATM 17 O O8 PA8 . . . X 2 232.706 165.77 179.266 1 74.17 ? O8 PA8 303 C 1 HETATM 18 C C13 PA8 . . . X 2 233.653 166.746 181.179 1 74.17 ? C13 PA8 303 C 1 HETATM 19 C C14 PA8 . . . X 2 232.255 166.672 181.788 1 74.17 ? C14 PA8 303 C 1 HETATM 20 C C15 PA8 . . . X 2 232.152 167.39 183.131 1 74.17 ? C15 PA8 303 C 1 HETATM 21 C C16 PA8 . . . X 2 232.774 166.591 184.274 1 74.17 ? C16 PA8 303 C 1 HETATM 22 C C17 PA8 . . . X 2 232.175 166.962 185.629 1 74.17 ? C17 PA8 303 C 1 HETATM 23 C C18 PA8 . . . X 2 232.727 166.098 186.761 1 74.17 ? C18 PA8 303 C 1 HETATM 24 C C19 PA8 . . . X 2 232.099 166.433 188.11 1 74.17 ? C19 PA8 303 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #