data_7D6X
#
_model_server_result.job_id            ZWto7TPx7nIsYfszRzxYVw 
_model_server_result.datetime_utc      '2024-10-19 09:22:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d6x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    7D6X 
#
_exptl.entry_id    7D6X 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7D6X 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D6X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 54 B CYS 54 1_555 E FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc2 B SG CYS 59 B CYS 59 1_555 E FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc3 B SG CYS 62 B CYS 62 1_555 E FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc4 B SG CYS 74 B CYS 74 1_555 E FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc5 B SG CYS 145 B CYS 145 1_555 F FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc6 B SG CYS 148 B CYS 148 1_555 F FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc7 B SG CYS 151 B CYS 151 1_555 F FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc8 B SG CYS 155 B CYS 155 1_555 G FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc9 B SG CYS 203 B CYS 203 1_555 G FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc10 B O LYS 207 B LYS 207 1_555 G FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc11 B SG CYS 209 B CYS 209 1_555 G FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc12 B SG CYS 213 B CYS 213 1_555 F FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc13 C SG CYS 114 C CYS 114 1_555 I FE2 FES . C FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc14 C NE2 HIS 155 C HIS 155 1_555 I FE1 FES . C FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? 
metalc ? metalc15 C SG CYS 206 C CYS 206 1_555 I FE1 FES . C FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc16 C NE2 HIS 240 C HIS 240 1_555 I FE2 FES . C FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 92 n n 
PA O2A FAD sing 93 n n 
PA O5B FAD sing 94 n n 
PA O3P FAD sing 95 n n 
O2A HOA2 FAD sing 96 n n 
O5B C5B FAD sing 97 n n 
C5B C4B FAD sing 98 n n 
C5B H51A FAD sing 99 n n 
C5B H52A FAD sing 100 n n 
C4B O4B FAD sing 101 n n 
C4B C3B FAD sing 102 n n 
C4B H4B FAD sing 103 n n 
O4B C1B FAD sing 104 n n 
C3B O3B FAD sing 105 n n 
C3B C2B FAD sing 106 n n 
C3B H3B FAD sing 107 n n 
O3B HO3A FAD sing 108 n n 
C2B O2B FAD sing 109 n n 
C2B C1B FAD sing 110 n n 
C2B H2B FAD sing 111 n n 
O2B HO2A FAD sing 112 n n 
C1B N9A FAD sing 113 n n 
C1B H1B FAD sing 114 n n 
N9A C8A FAD sing 115 n y 
N9A C4A FAD sing 116 n y 
C8A N7A FAD doub 117 n y 
C8A H8A FAD sing 118 n n 
N7A C5A FAD sing 119 n y 
C5A C6A FAD sing 120 n y 
C5A C4A FAD doub 121 n y 
C6A N6A FAD sing 122 n n 
C6A N1A FAD doub 123 n y 
N6A H61A FAD sing 124 n n 
N6A H62A FAD sing 125 n n 
N1A C2A FAD sing 126 n y 
C2A N3A FAD doub 127 n y 
C2A H2A FAD sing 128 n n 
N3A C4A FAD sing 129 n y 
N1 C2 FAD sing 130 n n 
N1 C10 FAD doub 131 n n 
C2 O2 FAD doub 132 n n 
C2 N3 FAD sing 133 n n 
N3 C4 FAD sing 134 n n 
N3 HN3 FAD sing 135 n n 
C4 O4 FAD doub 136 n n 
C4 C4X FAD sing 137 n n 
C4X N5 FAD doub 138 n n 
C4X C10 FAD sing 139 n n 
N5 C5X FAD sing 140 n n 
C5X C6 FAD doub 141 n y 
C5X C9A FAD sing 142 n y 
C6 C7 FAD sing 143 n y 
C6 H6 FAD sing 144 n n 
C7 C7M FAD sing 145 n n 
C7 C8 FAD doub 146 n y 
C7M HM71 FAD sing 147 n n 
C7M HM72 FAD sing 148 n n 
C7M HM73 FAD sing 149 n n 
C8 C8M FAD sing 150 n n 
C8 C9 FAD sing 151 n y 
C8M HM81 FAD sing 152 n n 
C8M HM82 FAD sing 153 n n 
C8M HM83 FAD sing 154 n n 
C9 C9A FAD doub 155 n y 
C9 H9 FAD sing 156 n n 
C9A N10 FAD sing 157 n n 
N10 C10 FAD sing 158 n n 
N10 C1' FAD sing 159 n n 
C1' C2' FAD sing 160 n n 
C1' "H1'1" FAD sing 161 n n 
C1' "H1'2" FAD sing 162 n n 
C2' O2' FAD sing 163 n n 
C2' C3' FAD sing 164 n n 
C2' H2' FAD sing 165 n n 
O2' HO2' FAD sing 166 n n 
C3' O3' FAD sing 167 n n 
C3' C4' FAD sing 168 n n 
C3' H3' FAD sing 169 n n 
O3' HO3' FAD sing 170 n n 
C4' O4' FAD sing 171 n n 
C4' C5' FAD sing 172 n n 
C4' H4' FAD sing 173 n n 
O4' HO4' FAD sing 174 n n 
C5' O5' FAD sing 175 n n 
C5' "H5'1" FAD sing 176 n n 
C5' "H5'2" FAD sing 177 n n 
O5' P FAD sing 178 n n 
P O1P FAD doub 179 n n 
P O2P FAD sing 180 n n 
P O3P FAD sing 181 n n 
O2P HOP2 FAD sing 182 n n 
#
_atom_sites.entry_id                     7D6X 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FAD A 1 701 701 FAD FAD . 
E 5 FES B 1 301 301 FES FES . 
F 6 SF4 B 1 302 302 SF4 SF4 . 
G 7 F3S B 1 303 303 F3S F3S . 
H 8 PEV C 1 301 301 PEV PEV . 
I 5 FES C 1 302 302 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 162.811 157.281 124.926 1 47.92 ? PA FAD 701 A 1 
HETATM 2 O O1A FAD . . . D 4 163.001 156.541 126.212 1 60.35 ? O1A FAD 701 A 1 
HETATM 3 O O2A FAD . . . D 4 161.43 157.597 124.44 1 49.78 ? O2A FAD 701 A 1 
HETATM 4 O O5B FAD . . . D 4 163.611 158.657 125.015 1 56.78 ? O5B FAD 701 A 1 
HETATM 5 C C5B FAD . . . D 4 164.307 159.167 123.888 1 44.11 ? C5B FAD 701 A 1 
HETATM 6 C C4B FAD . . . D 4 165.394 160.097 124.387 1 52.81 ? C4B FAD 701 A 1 
HETATM 7 O O4B FAD . . . D 4 165.91 160.861 123.306 1 51.81 ? O4B FAD 701 A 1 
HETATM 8 C C3B FAD . . . D 4 164.845 161.084 125.39 1 50.05 ? C3B FAD 701 A 1 
HETATM 9 O O3B FAD . . . D 4 165.706 161.066 126.525 1 55.52 ? O3B FAD 701 A 1 
HETATM 10 C C2B FAD . . . D 4 164.915 162.423 124.693 1 47.82 ? C2B FAD 701 A 1 
HETATM 11 O O2B FAD . . . D 4 165.256 163.482 125.585 1 66.09 ? O2B FAD 701 A 1 
HETATM 12 C C1B FAD . . . D 4 166.009 162.228 123.675 1 53.66 ? C1B FAD 701 A 1 
HETATM 13 N N9A FAD . . . D 4 165.796 163.105 122.508 1 52.69 ? N9A FAD 701 A 1 
HETATM 14 C C8A FAD . . . D 4 164.686 163.181 121.766 1 42.11 ? C8A FAD 701 A 1 
HETATM 15 N N7A FAD . . . D 4 164.83 164.09 120.777 1 48.96 ? N7A FAD 701 A 1 
HETATM 16 C C5A FAD . . . D 4 166.06 164.612 120.885 1 47.12 ? C5A FAD 701 A 1 
HETATM 17 C C6A FAD . . . D 4 166.861 165.621 120.168 1 47.41 ? C6A FAD 701 A 1 
HETATM 18 N N6A FAD . . . D 4 166.369 166.28 119.099 1 50.65 ? N6A FAD 701 A 1 
HETATM 19 N N1A FAD . . . D 4 168.104 165.866 120.61 1 47.33 ? N1A FAD 701 A 1 
HETATM 20 C C2A FAD . . . D 4 168.617 165.229 121.667 1 51.28 ? C2A FAD 701 A 1 
HETATM 21 N N3A FAD . . . D 4 167.948 164.306 122.362 1 51.84 ? N3A FAD 701 A 1 
HETATM 22 C C4A FAD . . . D 4 166.69 163.958 122.028 1 48.04 ? C4A FAD 701 A 1 
HETATM 23 N N1 FAD . . . D 4 156.183 149.697 125.961 1 62.94 ? N1 FAD 701 A 1 
HETATM 24 C C2 FAD . . . D 4 156.088 148.476 126.529 1 63.04 ? C2 FAD 701 A 1 
HETATM 25 O O2 FAD . . . D 4 156.696 147.528 126.01 1 56.25 ? O2 FAD 701 A 1 
HETATM 26 N N3 FAD . . . D 4 155.372 148.236 127.628 1 65.67 ? N3 FAD 701 A 1 
HETATM 27 C C4 FAD . . . D 4 154.693 149.196 128.243 1 65.21 ? C4 FAD 701 A 1 
HETATM 28 O O4 FAD . . . D 4 154.031 148.947 129.266 1 66.69 ? O4 FAD 701 A 1 
HETATM 29 C C4X FAD . . . D 4 154.737 150.561 127.693 1 60.33 ? C4X FAD 701 A 1 
HETATM 30 N N5 FAD . . . D 4 154.072 151.578 128.266 1 60.9 ? N5 FAD 701 A 1 
HETATM 31 C C5X FAD . . . D 4 154.131 152.816 127.74 1 55.02 ? C5X FAD 701 A 1 
HETATM 32 C C6 FAD . . . D 4 153.435 153.842 128.355 1 53.65 ? C6 FAD 701 A 1 
HETATM 33 C C7 FAD . . . D 4 153.485 155.12 127.829 1 50.56 ? C7 FAD 701 A 1 
HETATM 34 C C7M FAD . . . D 4 152.728 156.23 128.499 1 49.65 ? C7M FAD 701 A 1 
HETATM 35 C C8 FAD . . . D 4 154.282 155.39 126.609 1 47.62 ? C8 FAD 701 A 1 
HETATM 36 C C8M FAD . . . D 4 154.322 156.78 126.041 1 42.14 ? C8M FAD 701 A 1 
HETATM 37 C C9 FAD . . . D 4 154.98 154.365 125.987 1 49.32 ? C9 FAD 701 A 1 
HETATM 38 C C9A FAD . . . D 4 154.931 153.085 126.515 1 54.45 ? C9A FAD 701 A 1 
HETATM 39 N N10 FAD . . . D 4 155.63 152.032 125.904 1 55.67 ? N10 FAD 701 A 1 
HETATM 40 C C10 FAD . . . D 4 155.548 150.759 126.481 1 57.06 ? C10 FAD 701 A 1 
HETATM 41 C C1' FAD . . . D 4 156.433 152.245 124.704 1 52.27 ? C1' FAD 701 A 1 
HETATM 42 C C2' FAD . . . D 4 157.896 152.144 125.11 1 57.37 ? C2' FAD 701 A 1 
HETATM 43 O O2' FAD . . . D 4 158.101 152.932 126.284 1 60.89 ? O2' FAD 701 A 1 
HETATM 44 C C3' FAD . . . D 4 158.828 152.62 124.005 1 54.68 ? C3' FAD 701 A 1 
HETATM 45 O O3' FAD . . . D 4 159.161 151.515 123.165 1 59.71 ? O3' FAD 701 A 1 
HETATM 46 C C4' FAD . . . D 4 160.106 153.183 124.594 1 52.15 ? C4' FAD 701 A 1 
HETATM 47 O O4' FAD . . . D 4 159.731 153.933 125.744 1 56.02 ? O4' FAD 701 A 1 
HETATM 48 C C5' FAD . . . D 4 160.842 154.08 123.612 1 53.37 ? C5' FAD 701 A 1 
HETATM 49 O O5' FAD . . . D 4 161.996 154.619 124.246 1 50.83 ? O5' FAD 701 A 1 
HETATM 50 P P FAD . . . D 4 163.311 154.967 123.408 1 52.77 ? P FAD 701 A 1 
HETATM 51 O O1P FAD . . . D 4 164.438 154.143 123.942 1 55.36 ? O1P FAD 701 A 1 
HETATM 52 O O2P FAD . . . D 4 162.998 154.897 121.946 1 55.97 ? O2P FAD 701 A 1 
HETATM 53 O O3P FAD . . . D 4 163.603 156.496 123.781 1 53.35 ? O3P FAD 701 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#