data_7D73 # _model_server_result.job_id 5LLnIN9YfZ7eugTCHwP9TQ _model_server_result.datetime_utc '2024-11-22 21:48:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":401}' # _entry.id 7D73 # _exptl.entry_id 7D73 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D73 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 289 J CYS 289 1_555 I SG CYS 306 J CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 K SG CYS 289 L CYS 289 1_555 K SG CYS 306 L CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 G O ALA 52 G ALA 52 1_555 S N2 GTP . G GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? covale ? covale2 J O ALA 52 K ALA 52 1_555 V N2 GTP . K GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale3 L O ALA 52 H ALA 52 1_555 X N2 GTP . H GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7D73 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 GDD A 1 501 501 GDD GDD . N 4 GTP B 1 501 501 GTP GTP . O 4 GTP E 1 401 401 GTP GTP . P 3 GDD C 1 501 501 GDD GDD . Q 4 GTP D 1 501 501 GTP GTP . R 4 GTP F 1 401 401 GTP GTP . S 4 GTP G 1 401 401 GTP GTP . T 4 GTP I 1 401 401 GTP GTP . U 4 GTP J 1 401 401 GTP GTP . V 4 GTP K 1 401 401 GTP GTP . W 4 GTP L 1 401 401 GTP GTP . X 4 GTP H 1 401 401 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . X 4 93.597 162.562 82.748 1 71.69 ? PG GTP 401 H 1 HETATM 2 O O1G GTP . . . X 4 93.005 161.452 81.972 1 71.69 ? O1G GTP 401 H 1 HETATM 3 O O2G GTP . . . X 4 94.188 162.008 84.139 1 71.69 ? O2G GTP 401 H 1 HETATM 4 O O3G GTP . . . X 4 92.534 163.636 83.042 1 71.69 ? O3G GTP 401 H 1 HETATM 5 O O3B GTP . . . X 4 94.769 163.209 81.87 1 71.69 ? O3B GTP 401 H 1 HETATM 6 P PB GTP . . . X 4 94.73 164.251 80.649 1 71.69 ? PB GTP 401 H 1 HETATM 7 O O1B GTP . . . X 4 93.742 165.323 80.923 1 71.69 ? O1B GTP 401 H 1 HETATM 8 O O2B GTP . . . X 4 94.393 163.508 79.266 1 71.69 ? O2B GTP 401 H 1 HETATM 9 O O3A GTP . . . X 4 96.142 165.016 80.561 1 71.69 ? O3A GTP 401 H 1 HETATM 10 P PA GTP . . . X 4 97.405 164.903 79.571 1 71.69 ? PA GTP 401 H 1 HETATM 11 O O1A GTP . . . X 4 98.632 165.166 80.361 1 71.69 ? O1A GTP 401 H 1 HETATM 12 O O2A GTP . . . X 4 97.484 163.422 78.929 1 71.69 ? O2A GTP 401 H 1 HETATM 13 O O5' GTP . . . X 4 97.241 166.007 78.405 1 71.69 ? O5' GTP 401 H 1 HETATM 14 C C5' GTP . . . X 4 98.019 165.91 77.218 1 71.69 ? C5' GTP 401 H 1 HETATM 15 C C4' GTP . . . X 4 97.273 165.049 76.193 1 71.69 ? C4' GTP 401 H 1 HETATM 16 O O4' GTP . . . X 4 96.996 165.814 74.993 1 71.69 ? O4' GTP 401 H 1 HETATM 17 C C3' GTP . . . X 4 98.143 163.846 75.787 1 71.69 ? C3' GTP 401 H 1 HETATM 18 O O3' GTP . . . X 4 97.369 162.651 75.821 1 71.69 ? O3' GTP 401 H 1 HETATM 19 C C2' GTP . . . X 4 98.569 164.133 74.339 1 71.69 ? C2' GTP 401 H 1 HETATM 20 O O2' GTP . . . X 4 98.408 162.956 73.553 1 71.69 ? O2' GTP 401 H 1 HETATM 21 C C1' GTP . . . X 4 97.58 165.194 73.863 1 71.69 ? C1' GTP 401 H 1 HETATM 22 N N9 GTP . . . X 4 98.273 166.225 73.09 1 71.69 ? N9 GTP 401 H 1 HETATM 23 C C8 GTP . . . X 4 99.088 167.141 73.689 1 71.69 ? C8 GTP 401 H 1 HETATM 24 N N7 GTP . . . X 4 99.578 167.961 72.753 1 71.69 ? N7 GTP 401 H 1 HETATM 25 C C5 GTP . . . X 4 99.078 167.581 71.552 1 71.69 ? C5 GTP 401 H 1 HETATM 26 C C6 GTP . . . X 4 99.249 168.077 70.246 1 71.69 ? C6 GTP 401 H 1 HETATM 27 O O6 GTP . . . X 4 99.971 169.042 70.061 1 71.69 ? O6 GTP 401 H 1 HETATM 28 N N1 GTP . . . X 4 98.619 167.497 69.2 1 71.69 ? N1 GTP 401 H 1 HETATM 29 C C2 GTP . . . X 4 97.823 166.43 69.5 1 71.69 ? C2 GTP 401 H 1 HETATM 30 N N2 GTP . . . X 4 97.221 165.855 68.452 1 71.69 ? N2 GTP 401 H 1 HETATM 31 N N3 GTP . . . X 4 97.626 165.91 70.701 1 71.69 ? N3 GTP 401 H 1 HETATM 32 C C4 GTP . . . X 4 98.244 166.482 71.748 1 71.69 ? C4 GTP 401 H 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #