data_7D73
#
_model_server_result.job_id            SXUozHMUAuMmK4Bs-Hts9w 
_model_server_result.datetime_utc      '2024-11-22 21:24:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d73 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":501}' 
#
_entry.id    7D73 
#
_exptl.entry_id    7D73 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              605.341 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7D73 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D73 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 I SG CYS 289 J CYS 289 1_555 I SG CYS 306 J CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 K SG CYS 289 L CYS 289 1_555 K SG CYS 306 L CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 G O ALA 52 G ALA 52 1_555 S N2 GTP . G GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
covale ? covale2 J O ALA 52 K ALA 52 1_555 V N2 GTP . K GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
covale ? covale3 L O ALA 52 H ALA 52 1_555 X N2 GTP . H GTP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
#
_chem_comp.formula           'C16 H25 N5 O16 P2' 
_chem_comp.formula_weight    605.341 
_chem_comp.id                GDD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7D73 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 GDD A 1 501 501 GDD GDD . 
N 4 GTP B 1 501 501 GTP GTP . 
O 4 GTP E 1 401 401 GTP GTP . 
P 3 GDD C 1 501 501 GDD GDD . 
Q 4 GTP D 1 501 501 GTP GTP . 
R 4 GTP F 1 401 401 GTP GTP . 
S 4 GTP G 1 401 401 GTP GTP . 
T 4 GTP I 1 401 401 GTP GTP . 
U 4 GTP J 1 401 401 GTP GTP . 
V 4 GTP K 1 401 401 GTP GTP . 
W 4 GTP L 1 401 401 GTP GTP . 
X 4 GTP H 1 401 401 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 GDD . . . P 3 106.674 109.646 122.51 1 7.97 ? N2 GDD 501 C 1 
HETATM 2 C C2 GDD . . . P 3 106.77 108.984 123.698 1 7.97 ? C2 GDD 501 C 1 
HETATM 3 N N1 GDD . . . P 3 106.252 109.565 124.815 1 7.97 ? N1 GDD 501 C 1 
HETATM 4 N N3 GDD . . . P 3 107.355 107.827 123.643 1 7.97 ? N3 GDD 501 C 1 
HETATM 5 C C4 GDD . . . P 3 107.465 107.145 124.782 1 7.97 ? C4 GDD 501 C 1 
HETATM 6 C C5 GDD . . . P 3 106.984 107.631 125.983 1 7.97 ? C5 GDD 501 C 1 
HETATM 7 C C6 GDD . . . P 3 106.36 108.881 125.967 1 7.97 ? C6 GDD 501 C 1 
HETATM 8 O O6 GDD . . . P 3 105.92 109.342 127.001 1 7.97 ? O6 GDD 501 C 1 
HETATM 9 N N7 GDD . . . P 3 107.241 106.719 126.952 1 7.97 ? N7 GDD 501 C 1 
HETATM 10 C C8 GDD . . . P 3 107.878 105.685 126.397 1 7.97 ? C8 GDD 501 C 1 
HETATM 11 N N9 GDD . . . P 3 108.014 105.952 125.073 1 7.97 ? N9 GDD 501 C 1 
HETATM 12 C C1' GDD . . . P 3 108.662 104.984 124.206 1 7.97 ? C1' GDD 501 C 1 
HETATM 13 C C2' GDD . . . P 3 109.916 104.432 124.88 1 7.97 ? C2' GDD 501 C 1 
HETATM 14 O O2' GDD . . . P 3 111.048 105.199 124.516 1 7.97 ? O2' GDD 501 C 1 
HETATM 15 C C3' GDD . . . P 3 110.031 103.073 124.199 1 7.97 ? C3' GDD 501 C 1 
HETATM 16 O O3' GDD . . . P 3 110.646 103.23 122.929 1 7.97 ? O3' GDD 501 C 1 
HETATM 17 C C4' GDD . . . P 3 108.559 102.678 124.037 1 7.97 ? C4' GDD 501 C 1 
HETATM 18 O O4' GDD . . . P 3 107.791 103.894 124.065 1 7.97 ? O4' GDD 501 C 1 
HETATM 19 C C5' GDD . . . P 3 108.154 101.765 125.188 1 7.97 ? C5' GDD 501 C 1 
HETATM 20 O O5' GDD . . . P 3 107.342 102.438 126.138 1 7.97 ? O5' GDD 501 C 1 
HETATM 21 P PA GDD . . . P 3 107.489 101.878 127.628 1 7.97 ? PA GDD 501 C 1 
HETATM 22 O O1A GDD . . . P 3 106.196 101.903 128.323 1 7.97 ? O1A GDD 501 C 1 
HETATM 23 O O2A GDD . . . P 3 108.567 102.738 128.447 1 7.97 ? O2A GDD 501 C 1 
HETATM 24 O O3A GDD . . . P 3 107.992 100.36 127.493 1 7.97 ? O3A GDD 501 C 1 
HETATM 25 P PB GDD . . . P 3 108.022 99.12 128.503 1 7.97 ? PB GDD 501 C 1 
HETATM 26 O O2B GDD . . . P 3 107.194 99.425 129.844 1 7.97 ? O2B GDD 501 C 1 
HETATM 27 O O3B GDD . . . P 3 109.408 98.845 128.871 1 7.97 ? O3B GDD 501 C 1 
HETATM 28 O O1B GDD . . . P 3 107.35 97.9 127.708 1 7.97 ? O1B GDD 501 C 1 
HETATM 29 C C11 GDD . . . P 3 106.886 98.065 126.379 1 7.97 ? C11 GDD 501 C 1 
HETATM 30 O O51 GDD . . . P 3 107.527 97.135 125.508 1 7.97 ? O51 GDD 501 C 1 
HETATM 31 C C51 GDD . . . P 3 107.339 95.773 125.881 1 7.97 ? C51 GDD 501 C 1 
HETATM 32 C C61 GDD . . . P 3 107.985 94.922 124.816 1 7.97 ? C61 GDD 501 C 1 
HETATM 33 O O6A GDD . . . P 3 109.18 95.568 124.392 1 7.97 ? O6A GDD 501 C 1 
HETATM 34 C C21 GDD . . . P 3 105.386 97.844 126.327 1 7.97 ? C21 GDD 501 C 1 
HETATM 35 O O21 GDD . . . P 3 105.011 98.015 124.97 1 7.97 ? O21 GDD 501 C 1 
HETATM 36 C C31 GDD . . . P 3 105.032 96.413 126.712 1 7.97 ? C31 GDD 501 C 1 
HETATM 37 O O31 GDD . . . P 3 103.65 96.22 126.424 1 7.97 ? O31 GDD 501 C 1 
HETATM 38 C C41 GDD . . . P 3 105.866 95.379 125.945 1 7.97 ? C41 GDD 501 C 1 
HETATM 39 O O41 GDD . . . P 3 105.787 94.12 126.594 1 7.97 ? O41 GDD 501 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#