data_7D77
#
_model_server_result.job_id            TrkRo3jDmBY7zPPzKmBHRA 
_model_server_result.datetime_utc      '2024-11-21 22:27:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d77 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    7D77 
#
_exptl.entry_id    7D77 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7D77 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D77 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 350 R CYS 338 1_555 D SG CYS 432 R CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 A SG CYS 223 A CYS 351 1_555 F C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 561 n n 
CBA CAB Y01 sing 562 n n 
CBA CAN Y01 sing 563 n n 
CAN CAJ Y01 sing 564 n n 
CAJ CAO Y01 sing 565 n n 
CAO CBB Y01 sing 566 n n 
CBB CAC Y01 sing 567 n n 
CBB CBE Y01 sing 568 n n 
CBE CAP Y01 sing 569 n n 
CBE CBI Y01 sing 570 n n 
CAP CAQ Y01 sing 571 n n 
CAQ CBG Y01 sing 572 n n 
CBG CBI Y01 sing 573 n n 
CBG CBD Y01 sing 574 n n 
CBI CAE Y01 sing 575 n n 
CBI CAU Y01 sing 576 n n 
CAU CAS Y01 sing 577 n n 
CAS CBF Y01 sing 578 n n 
CBF CBD Y01 sing 579 n n 
CBF CBH Y01 sing 580 n n 
CBD CAK Y01 sing 581 n n 
CAK CAI Y01 sing 582 n n 
CAI CAZ Y01 doub 583 n n 
CAZ CAV Y01 sing 584 n n 
CAZ CBH Y01 sing 585 n n 
CAV CBC Y01 sing 586 n n 
CBH CAD Y01 sing 587 n n 
CBH CAT Y01 sing 588 n n 
CAT CAR Y01 sing 589 n n 
CAR CBC Y01 sing 590 n n 
CBC OAW Y01 sing 591 n n 
OAW CAY Y01 sing 592 n n 
CAY OAG Y01 doub 593 n n 
CAY CAM Y01 sing 594 n n 
CAM CAL Y01 sing 595 n n 
CAL CAX Y01 sing 596 n n 
CAX OAH Y01 sing 597 n n 
CAX OAF Y01 doub 598 n n 
CAA HAA1 Y01 sing 599 n n 
CAA HAA2 Y01 sing 600 n n 
CAA HAA3 Y01 sing 601 n n 
CBA HBA Y01 sing 602 n n 
CAB HAB1 Y01 sing 603 n n 
CAB HAB2 Y01 sing 604 n n 
CAB HAB3 Y01 sing 605 n n 
CAN HAN1 Y01 sing 606 n n 
CAN HAN2 Y01 sing 607 n n 
CAJ HAJ1 Y01 sing 608 n n 
CAJ HAJ2 Y01 sing 609 n n 
CAO HAO1 Y01 sing 610 n n 
CAO HAO2 Y01 sing 611 n n 
CBB HBB Y01 sing 612 n n 
CAC HAC1 Y01 sing 613 n n 
CAC HAC2 Y01 sing 614 n n 
CAC HAC3 Y01 sing 615 n n 
CBE HBE Y01 sing 616 n n 
CAP HAP1 Y01 sing 617 n n 
CAP HAP2 Y01 sing 618 n n 
CAQ HAQ1 Y01 sing 619 n n 
CAQ HAQ2 Y01 sing 620 n n 
CBG HBG Y01 sing 621 n n 
CBD HBD Y01 sing 622 n n 
CAE HAE1 Y01 sing 623 n n 
CAE HAE2 Y01 sing 624 n n 
CAE HAE3 Y01 sing 625 n n 
CAU HAU1 Y01 sing 626 n n 
CAU HAU2 Y01 sing 627 n n 
CAS HAS1 Y01 sing 628 n n 
CAS HAS2 Y01 sing 629 n n 
CBF HBF Y01 sing 630 n n 
CAK HAK1 Y01 sing 631 n n 
CAK HAK2 Y01 sing 632 n n 
CAI HAI Y01 sing 633 n n 
CAV HAV1 Y01 sing 634 n n 
CAV HAV2 Y01 sing 635 n n 
CBC HBC Y01 sing 636 n n 
CAD HAD1 Y01 sing 637 n n 
CAD HAD2 Y01 sing 638 n n 
CAD HAD3 Y01 sing 639 n n 
CAT HAT1 Y01 sing 640 n n 
CAT HAT2 Y01 sing 641 n n 
CAR HAR1 Y01 sing 642 n n 
CAR HAR2 Y01 sing 643 n n 
CAM HAM1 Y01 sing 644 n n 
CAM HAM2 Y01 sing 645 n n 
CAL HAL1 Y01 sing 646 n n 
CAL HAL2 Y01 sing 647 n n 
OAH HAH Y01 sing 648 n n 
#
_atom_sites.entry_id                     7D77 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 PLM A 1 401 4 PLM PLM . 
G 7 Y01 R 1 601 1 Y01 CHS . 
H 6 PLM R 1 602 2 PLM PLM . 
I 6 PLM R 1 603 3 PLM PLM . 
J 8 HCY R 1 604 5 HCY HCY . 
K 9 CLR R 1 605 7 CLR CLR . 
L 9 CLR R 1 606 8 CLR CLR . 
M 10 HOH R 1 701 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . G 7 112.411 116.154 109.377 1 108.11 ? CAA Y01 601 R 1 
HETATM 2 C CBA Y01 . . . G 7 111.049 115.51 109.271 1 108.11 ? CBA Y01 601 R 1 
HETATM 3 C CAB Y01 . . . G 7 111.07 114.142 109.978 1 108.11 ? CAB Y01 601 R 1 
HETATM 4 C CAN Y01 . . . G 7 109.986 116.431 109.947 1 108.11 ? CAN Y01 601 R 1 
HETATM 5 C CAJ Y01 . . . G 7 110.439 116.779 111.387 1 108.11 ? CAJ Y01 601 R 1 
HETATM 6 C CAO Y01 . . . G 7 109.299 117.616 112.107 1 108.11 ? CAO Y01 601 R 1 
HETATM 7 C CBB Y01 . . . G 7 109.832 118.205 113.427 1 108.11 ? CBB Y01 601 R 1 
HETATM 8 C CAC Y01 . . . G 7 111.074 117.463 113.855 1 108.11 ? CAC Y01 601 R 1 
HETATM 9 C CBE Y01 . . . G 7 110.172 119.734 113.227 1 108.11 ? CBE Y01 601 R 1 
HETATM 10 C CAP Y01 . . . G 7 109.725 120.205 111.749 1 108.11 ? CAP Y01 601 R 1 
HETATM 11 C CAQ Y01 . . . G 7 108.936 121.643 111.959 1 108.11 ? CAQ Y01 601 R 1 
HETATM 12 C CBG Y01 . . . G 7 109.387 121.959 113.294 1 108.11 ? CBG Y01 601 R 1 
HETATM 13 C CBI Y01 . . . G 7 109.382 120.506 114.046 1 108.11 ? CBI Y01 601 R 1 
HETATM 14 C CAE Y01 . . . G 7 107.971 119.956 114.086 1 108.11 ? CAE Y01 601 R 1 
HETATM 15 C CAU Y01 . . . G 7 109.904 120.793 115.545 1 108.11 ? CAU Y01 601 R 1 
HETATM 16 C CAS Y01 . . . G 7 109.117 121.681 116.085 1 108.11 ? CAS Y01 601 R 1 
HETATM 17 C CBF Y01 . . . G 7 109.093 122.913 115.502 1 108.11 ? CBF Y01 601 R 1 
HETATM 18 C CBD Y01 . . . G 7 108.483 122.9 114.183 1 108.11 ? CBD Y01 601 R 1 
HETATM 19 C CAK Y01 . . . G 7 108.502 124.336 113.595 1 108.11 ? CAK Y01 601 R 1 
HETATM 20 C CAI Y01 . . . G 7 108.535 125.471 114.658 1 108.11 ? CAI Y01 601 R 1 
HETATM 21 C CAZ Y01 . . . G 7 108.202 125.271 115.906 1 108.11 ? CAZ Y01 601 R 1 
HETATM 22 C CAV Y01 . . . G 7 107.563 126.405 116.727 1 108.11 ? CAV Y01 601 R 1 
HETATM 23 C CBH Y01 . . . G 7 108.231 123.977 116.491 1 108.11 ? CBH Y01 601 R 1 
HETATM 24 C CAD Y01 . . . G 7 106.804 123.467 116.661 1 108.11 ? CAD Y01 601 R 1 
HETATM 25 C CAT Y01 . . . G 7 108.894 124.057 117.837 1 108.11 ? CAT Y01 601 R 1 
HETATM 26 C CAR Y01 . . . G 7 108.249 125.113 118.8 1 108.11 ? CAR Y01 601 R 1 
HETATM 27 C CBC Y01 . . . G 7 108.19 126.518 118.136 1 108.11 ? CBC Y01 601 R 1 
HETATM 28 O OAW Y01 . . . G 7 107.42 127.361 118.914 1 108.11 ? OAW Y01 601 R 1 
HETATM 29 C CAY Y01 . . . G 7 107.983 128.657 119.093 1 108.11 ? CAY Y01 601 R 1 
HETATM 30 O OAG Y01 . . . G 7 107.732 129.284 120.071 1 108.11 ? OAG Y01 601 R 1 
HETATM 31 C CAM Y01 . . . G 7 108.931 129.255 118.003 1 108.11 ? CAM Y01 601 R 1 
HETATM 32 C CAL Y01 . . . G 7 109.446 130.628 118.468 1 108.11 ? CAL Y01 601 R 1 
HETATM 33 C CAX Y01 . . . G 7 110.418 131.189 117.429 1 108.11 ? CAX Y01 601 R 1 
HETATM 34 O OAH Y01 . . . G 7 110.939 132.317 117.602 1 108.11 ? OAH Y01 601 R 1 
HETATM 35 O OAF Y01 . . . G 7 110.693 130.523 116.406 1 108.11 ? OAF Y01 601 R 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#