data_7D77
#
_model_server_result.job_id            lKiib3-ml9qJuz4uC_p47g 
_model_server_result.datetime_utc      '2024-11-21 22:56:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d77 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":604}' 
#
_entry.id    7D77 
#
_exptl.entry_id    7D77 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              362.46 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7D77 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D77 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 350 R CYS 338 1_555 D SG CYS 432 R CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 A SG CYS 223 A CYS 351 1_555 F C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
#
_chem_comp.formula           'C21 H30 O5' 
_chem_comp.formula_weight    362.46 
_chem_comp.id                HCY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CORTISOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C3 HCY doub 206 n n 
C3 C4 HCY sing 207 n n 
C3 C2 HCY sing 208 n n 
C4 C5 HCY doub 209 n n 
C5 C6 HCY sing 210 n n 
C5 C10 HCY sing 211 n n 
C6 C7 HCY sing 212 n n 
C7 C8 HCY sing 213 n n 
C2 C1 HCY sing 214 n n 
C1 C10 HCY sing 215 n n 
C10 C19 HCY sing 216 n n 
C10 C9 HCY sing 217 n n 
C9 C8 HCY sing 218 n n 
C9 C11 HCY sing 219 n n 
C8 C14 HCY sing 220 n n 
C11 O2 HCY sing 221 n n 
C11 C12 HCY sing 222 n n 
C12 C13 HCY sing 223 n n 
C13 C18 HCY sing 224 n n 
C13 C14 HCY sing 225 n n 
C13 C17 HCY sing 226 n n 
C14 C15 HCY sing 227 n n 
C15 C16 HCY sing 228 n n 
C16 C17 HCY sing 229 n n 
C17 O3 HCY sing 230 n n 
C17 C20 HCY sing 231 n n 
C20 O4 HCY doub 232 n n 
C20 C21 HCY sing 233 n n 
C21 O5 HCY sing 234 n n 
C4 H4 HCY sing 235 n n 
C2 H2C1 HCY sing 236 n n 
C2 H2C2 HCY sing 237 n n 
C6 H6C1 HCY sing 238 n n 
C6 H6C2 HCY sing 239 n n 
C7 H7C1 HCY sing 240 n n 
C7 H7C2 HCY sing 241 n n 
C8 H8 HCY sing 242 n n 
C1 H1C1 HCY sing 243 n n 
C1 H1C2 HCY sing 244 n n 
C19 H191 HCY sing 245 n n 
C19 H192 HCY sing 246 n n 
C19 H193 HCY sing 247 n n 
C9 H9 HCY sing 248 n n 
C11 H11 HCY sing 249 n n 
C14 H14 HCY sing 250 n n 
O2 H2 HCY sing 251 n n 
C12 H121 HCY sing 252 n n 
C12 H122 HCY sing 253 n n 
C18 H181 HCY sing 254 n n 
C18 H182 HCY sing 255 n n 
C18 H183 HCY sing 256 n n 
C15 H151 HCY sing 257 n n 
C15 H152 HCY sing 258 n n 
C16 H161 HCY sing 259 n n 
C16 H162 HCY sing 260 n n 
O3 H3 HCY sing 261 n n 
C21 H211 HCY sing 262 n n 
C21 H212 HCY sing 263 n n 
O5 H5 HCY sing 264 n n 
#
_atom_sites.entry_id                     7D77 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 PLM A 1 401 4 PLM PLM . 
G 7 Y01 R 1 601 1 Y01 CHS . 
H 6 PLM R 1 602 2 PLM PLM . 
I 6 PLM R 1 603 3 PLM PLM . 
J 8 HCY R 1 604 5 HCY HCY . 
K 9 CLR R 1 605 7 CLR CLR . 
L 9 CLR R 1 606 8 CLR CLR . 
M 10 HOH R 1 701 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HCY . . . J 8 91.46 125.234 112.278 1 101.29 ? C1 HCY 604 R 1 
HETATM 2 C C2 HCY . . . J 8 92.129 126.394 113.004 1 101.29 ? C2 HCY 604 R 1 
HETATM 3 C C3 HCY . . . J 8 91.118 127.484 113.229 1 101.29 ? C3 HCY 604 R 1 
HETATM 4 C C4 HCY . . . J 8 89.776 127.104 113.685 1 101.29 ? C4 HCY 604 R 1 
HETATM 5 C C5 HCY . . . J 8 89.414 125.818 113.672 1 101.29 ? C5 HCY 604 R 1 
HETATM 6 C C6 HCY . . . J 8 88.187 125.365 114.412 1 101.29 ? C6 HCY 604 R 1 
HETATM 7 C C7 HCY . . . J 8 87.28 124.607 113.441 1 101.29 ? C7 HCY 604 R 1 
HETATM 8 C C8 HCY . . . J 8 88.044 123.621 112.564 1 101.29 ? C8 HCY 604 R 1 
HETATM 9 C C9 HCY . . . J 8 89.207 124.29 111.857 1 101.29 ? C9 HCY 604 R 1 
HETATM 10 C C10 HCY . . . J 8 90.164 124.759 112.925 1 101.29 ? C10 HCY 604 R 1 
HETATM 11 C C12 HCY . . . J 8 89.001 122.519 109.978 1 101.29 ? C12 HCY 604 R 1 
HETATM 12 C C11 HCY . . . J 8 89.914 123.421 110.813 1 101.29 ? C11 HCY 604 R 1 
HETATM 13 C C13 HCY . . . J 8 87.973 121.886 110.883 1 101.29 ? C13 HCY 604 R 1 
HETATM 14 C C14 HCY . . . J 8 87.181 123.013 111.485 1 101.29 ? C14 HCY 604 R 1 
HETATM 15 C C15 HCY . . . J 8 85.848 122.423 111.906 1 101.29 ? C15 HCY 604 R 1 
HETATM 16 C C16 HCY . . . J 8 85.625 121.262 110.941 1 101.29 ? C16 HCY 604 R 1 
HETATM 17 C C17 HCY . . . J 8 86.945 120.985 110.236 1 101.29 ? C17 HCY 604 R 1 
HETATM 18 C C18 HCY . . . J 8 88.698 121.123 111.974 1 101.29 ? C18 HCY 604 R 1 
HETATM 19 C C19 HCY . . . J 8 90.387 123.635 113.919 1 101.29 ? C19 HCY 604 R 1 
HETATM 20 C C20 HCY . . . J 8 87.286 119.541 110.407 1 101.29 ? C20 HCY 604 R 1 
HETATM 21 C C21 HCY . . . J 8 87.924 118.779 109.277 1 101.29 ? C21 HCY 604 R 1 
HETATM 22 O O1 HCY . . . J 8 91.406 128.653 113.04 1 101.29 ? O1 HCY 604 R 1 
HETATM 23 O O2 HCY . . . J 8 90.891 122.618 111.47 1 101.29 ? O2 HCY 604 R 1 
HETATM 24 O O3 HCY . . . J 8 86.829 121.286 108.847 1 101.29 ? O3 HCY 604 R 1 
HETATM 25 O O4 HCY . . . J 8 87.045 119 111.466 1 101.29 ? O4 HCY 604 R 1 
HETATM 26 O O5 HCY . . . J 8 87.111 117.657 108.923 1 101.29 ? O5 HCY 604 R 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#