data_7D7P # _model_server_result.job_id REbAialignnVff3IPLn70w _model_server_result.datetime_utc '2024-11-28 11:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 7D7P # _exptl.entry_id 7D7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.82 _cell.angle_gamma 90 _cell.entry_id 7D7P _cell.length_a 117.2 _cell.length_b 67.54 _cell.length_c 56.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_559 -x+1/2,y+1/2,-z+4 -1 0 0 0 1 0 0 0 -1 -22.282392 33.77 212.700711 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 111 A HIS 456 1_555 G ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A NE2 HIS 146 A HIS 491 1_555 G ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc3 A OD2 ASP 147 A ASP 492 1_555 G ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc4 A OD1 ASP 147 A ASP 492 1_555 H MG MG . A MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc5 A OD1 ASP 260 A ASP 605 1_555 G ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc6 G ZN ZN . A ZN 806 1_555 I O HOH . A HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc7 G ZN ZN . A ZN 806 1_555 I O HOH . A HOH 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc8 H MG MG . A MG 807 1_555 I O HOH . A HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc9 H MG MG . A MG 807 1_555 I O HOH . A HOH 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc10 H MG MG . A MG 807 1_555 I O HOH . A HOH 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc11 H MG MG . A MG 807 1_555 I O HOH . A HOH 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc12 H MG MG . A MG 807 1_555 I O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 148 n n C1 C2 EDO sing 149 n n C1 H11 EDO sing 150 n n C1 H12 EDO sing 151 n n O1 HO1 EDO sing 152 n n C2 O2 EDO sing 153 n n C2 H21 EDO sing 154 n n C2 H22 EDO sing 155 n n O2 HO2 EDO sing 156 n n # _atom_sites.entry_id 7D7P _atom_sites.fract_transf_matrix[1][1] 0.008532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003244 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2PE A 1 801 801 2PE 2PE . C 3 PEG A 1 802 901 PEG PEG . D 4 EDO A 1 803 1001 EDO EDO . E 4 EDO A 1 804 1101 EDO EDO . F 4 EDO A 1 805 1201 EDO EDO . G 5 ZN A 1 806 720 ZN ZN . H 6 MG A 1 807 721 MG MG . I 7 HOH A 1 901 165 HOH HOH . I 7 HOH A 2 902 110 HOH HOH . I 7 HOH A 3 903 33 HOH HOH . I 7 HOH A 4 904 62 HOH HOH . I 7 HOH A 5 905 91 HOH HOH . I 7 HOH A 6 906 162 HOH HOH . I 7 HOH A 7 907 51 HOH HOH . I 7 HOH A 8 908 138 HOH HOH . I 7 HOH A 9 909 113 HOH HOH . I 7 HOH A 10 910 10 HOH HOH . I 7 HOH A 11 911 18 HOH HOH . I 7 HOH A 12 912 111 HOH HOH . I 7 HOH A 13 913 12 HOH HOH . I 7 HOH A 14 914 71 HOH HOH . I 7 HOH A 15 915 68 HOH HOH . I 7 HOH A 16 916 24 HOH HOH . I 7 HOH A 17 917 25 HOH HOH . I 7 HOH A 18 918 120 HOH HOH . I 7 HOH A 19 919 45 HOH HOH . I 7 HOH A 20 920 76 HOH HOH . I 7 HOH A 21 921 172 HOH HOH . I 7 HOH A 22 922 57 HOH HOH . I 7 HOH A 23 923 8 HOH HOH . I 7 HOH A 24 924 34 HOH HOH . I 7 HOH A 25 925 81 HOH HOH . I 7 HOH A 26 926 17 HOH HOH . I 7 HOH A 27 927 5 HOH HOH . I 7 HOH A 28 928 38 HOH HOH . I 7 HOH A 29 929 7 HOH HOH . I 7 HOH A 30 930 41 HOH HOH . I 7 HOH A 31 931 109 HOH HOH . I 7 HOH A 32 932 35 HOH HOH . I 7 HOH A 33 933 163 HOH HOH . I 7 HOH A 34 934 3 HOH HOH . I 7 HOH A 35 935 85 HOH HOH . I 7 HOH A 36 936 116 HOH HOH . I 7 HOH A 37 937 23 HOH HOH . I 7 HOH A 38 938 58 HOH HOH . I 7 HOH A 39 939 124 HOH HOH . I 7 HOH A 40 940 14 HOH HOH . I 7 HOH A 41 941 82 HOH HOH . I 7 HOH A 42 942 95 HOH HOH . I 7 HOH A 43 943 21 HOH HOH . I 7 HOH A 44 944 153 HOH HOH . I 7 HOH A 45 945 50 HOH HOH . I 7 HOH A 46 946 136 HOH HOH . I 7 HOH A 47 947 44 HOH HOH . I 7 HOH A 48 948 133 HOH HOH . I 7 HOH A 49 949 9 HOH HOH . I 7 HOH A 50 950 141 HOH HOH . I 7 HOH A 51 951 107 HOH HOH . I 7 HOH A 52 952 150 HOH HOH . I 7 HOH A 53 953 26 HOH HOH . I 7 HOH A 54 954 27 HOH HOH . I 7 HOH A 55 955 11 HOH HOH . I 7 HOH A 56 956 55 HOH HOH . I 7 HOH A 57 957 114 HOH HOH . I 7 HOH A 58 958 13 HOH HOH . I 7 HOH A 59 959 125 HOH HOH . I 7 HOH A 60 960 123 HOH HOH . I 7 HOH A 61 961 37 HOH HOH . I 7 HOH A 62 962 89 HOH HOH . I 7 HOH A 63 963 92 HOH HOH . I 7 HOH A 64 964 54 HOH HOH . I 7 HOH A 65 965 103 HOH HOH . I 7 HOH A 66 966 67 HOH HOH . I 7 HOH A 67 967 119 HOH HOH . I 7 HOH A 68 968 84 HOH HOH . I 7 HOH A 69 969 70 HOH HOH . I 7 HOH A 70 970 77 HOH HOH . I 7 HOH A 71 971 128 HOH HOH . I 7 HOH A 72 972 22 HOH HOH . I 7 HOH A 73 973 19 HOH HOH . I 7 HOH A 74 974 29 HOH HOH . I 7 HOH A 75 975 100 HOH HOH . I 7 HOH A 76 976 104 HOH HOH . I 7 HOH A 77 977 60 HOH HOH . I 7 HOH A 78 978 69 HOH HOH . I 7 HOH A 79 979 2 HOH HOH . I 7 HOH A 80 980 63 HOH HOH . I 7 HOH A 81 981 16 HOH HOH . I 7 HOH A 82 982 157 HOH HOH . I 7 HOH A 83 983 79 HOH HOH . I 7 HOH A 84 984 102 HOH HOH . I 7 HOH A 85 985 74 HOH HOH . I 7 HOH A 86 986 126 HOH HOH . I 7 HOH A 87 987 171 HOH HOH . I 7 HOH A 88 988 161 HOH HOH . I 7 HOH A 89 989 131 HOH HOH . I 7 HOH A 90 990 127 HOH HOH . I 7 HOH A 91 991 66 HOH HOH . I 7 HOH A 92 992 118 HOH HOH . I 7 HOH A 93 993 87 HOH HOH . I 7 HOH A 94 994 31 HOH HOH . I 7 HOH A 95 995 48 HOH HOH . I 7 HOH A 96 996 15 HOH HOH . I 7 HOH A 97 997 78 HOH HOH . I 7 HOH A 98 998 39 HOH HOH . I 7 HOH A 99 999 64 HOH HOH . I 7 HOH A 100 1000 145 HOH HOH . I 7 HOH A 101 1001 73 HOH HOH . I 7 HOH A 102 1002 101 HOH HOH . I 7 HOH A 103 1003 28 HOH HOH . I 7 HOH A 104 1004 20 HOH HOH . I 7 HOH A 105 1005 72 HOH HOH . I 7 HOH A 106 1006 170 HOH HOH . I 7 HOH A 107 1007 6 HOH HOH . I 7 HOH A 108 1008 32 HOH HOH . I 7 HOH A 109 1009 143 HOH HOH . I 7 HOH A 110 1010 146 HOH HOH . I 7 HOH A 111 1011 56 HOH HOH . I 7 HOH A 112 1012 140 HOH HOH . I 7 HOH A 113 1013 97 HOH HOH . I 7 HOH A 114 1014 147 HOH HOH . I 7 HOH A 115 1015 117 HOH HOH . I 7 HOH A 116 1016 160 HOH HOH . I 7 HOH A 117 1017 166 HOH HOH . I 7 HOH A 118 1018 36 HOH HOH . I 7 HOH A 119 1019 121 HOH HOH . I 7 HOH A 120 1020 52 HOH HOH . I 7 HOH A 121 1021 53 HOH HOH . I 7 HOH A 122 1022 30 HOH HOH . I 7 HOH A 123 1023 75 HOH HOH . I 7 HOH A 124 1024 40 HOH HOH . I 7 HOH A 125 1025 61 HOH HOH . I 7 HOH A 126 1026 49 HOH HOH . I 7 HOH A 127 1027 42 HOH HOH . I 7 HOH A 128 1028 130 HOH HOH . I 7 HOH A 129 1029 88 HOH HOH . I 7 HOH A 130 1030 47 HOH HOH . I 7 HOH A 131 1031 99 HOH HOH . I 7 HOH A 132 1032 173 HOH HOH . I 7 HOH A 133 1033 46 HOH HOH . I 7 HOH A 134 1034 134 HOH HOH . I 7 HOH A 135 1035 1 HOH HOH . I 7 HOH A 136 1036 86 HOH HOH . I 7 HOH A 137 1037 152 HOH HOH . I 7 HOH A 138 1038 159 HOH HOH . I 7 HOH A 139 1039 169 HOH HOH . I 7 HOH A 140 1040 135 HOH HOH . I 7 HOH A 141 1041 59 HOH HOH . I 7 HOH A 142 1042 105 HOH HOH . I 7 HOH A 143 1043 176 HOH HOH . I 7 HOH A 144 1044 4 HOH HOH . I 7 HOH A 145 1045 139 HOH HOH . I 7 HOH A 146 1046 43 HOH HOH . I 7 HOH A 147 1047 158 HOH HOH . I 7 HOH A 148 1048 106 HOH HOH . I 7 HOH A 149 1049 90 HOH HOH . I 7 HOH A 150 1050 129 HOH HOH . I 7 HOH A 151 1051 167 HOH HOH . I 7 HOH A 152 1052 122 HOH HOH . I 7 HOH A 153 1053 93 HOH HOH . I 7 HOH A 154 1054 154 HOH HOH . I 7 HOH A 155 1055 142 HOH HOH . I 7 HOH A 156 1056 155 HOH HOH . I 7 HOH A 157 1057 80 HOH HOH . I 7 HOH A 158 1058 151 HOH HOH . I 7 HOH A 159 1059 144 HOH HOH . I 7 HOH A 160 1060 98 HOH HOH . I 7 HOH A 161 1061 83 HOH HOH . I 7 HOH A 162 1062 149 HOH HOH . I 7 HOH A 163 1063 65 HOH HOH . I 7 HOH A 164 1064 174 HOH HOH . I 7 HOH A 165 1065 137 HOH HOH . I 7 HOH A 166 1066 94 HOH HOH . I 7 HOH A 167 1067 148 HOH HOH . I 7 HOH A 168 1068 108 HOH HOH . I 7 HOH A 169 1069 115 HOH HOH . I 7 HOH A 170 1070 175 HOH HOH . I 7 HOH A 171 1071 168 HOH HOH . I 7 HOH A 172 1072 132 HOH HOH . I 7 HOH A 173 1073 156 HOH HOH . I 7 HOH A 174 1074 164 HOH HOH . I 7 HOH A 175 1075 112 HOH HOH . I 7 HOH A 176 1076 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -14.175 3.163 132.206 1 42.4 ? C1 EDO 803 A 1 HETATM 2 O O1 EDO . . . D 4 -15.407 2.487 132.483 1 50.22 ? O1 EDO 803 A 1 HETATM 3 C C2 EDO . . . D 4 -14.284 4.594 132.714 1 50.36 ? C2 EDO 803 A 1 HETATM 4 O O2 EDO . . . D 4 -14.205 5.492 131.605 1 44.94 ? O2 EDO 803 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #