data_7D7Q # _model_server_result.job_id IrixOmmPZa-QHJ5tVOhTMg _model_server_result.datetime_utc '2024-11-04 22:38:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 7D7Q # _exptl.entry_id 7D7Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D7Q _cell.length_a 76.3 _cell.length_b 136.53 _cell.length_c 206.54 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 265 A LYS 296 1_555 C C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.246 ? covale ? covale2 B NZ LYS 265 B LYS 296 1_555 G C15 RET . B RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.241 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 235 n n C10 C9 OLC doub 236 n n C10 C11 OLC sing 237 n n C9 C8 OLC sing 238 n n C17 C16 OLC sing 239 z n C11 C12 OLC sing 240 n n C8 C7 OLC sing 241 n n C24 C22 OLC sing 242 n n C24 O25 OLC sing 243 n n C16 C15 OLC sing 244 n n C12 C13 OLC sing 245 n n C7 C6 OLC sing 246 n n C15 C14 OLC sing 247 n n C13 C14 OLC sing 248 n n C6 C5 OLC sing 249 n n C5 C4 OLC sing 250 n n C4 C3 OLC sing 251 n n C3 C2 OLC sing 252 n n C2 C1 OLC sing 253 n n C21 C22 OLC sing 254 n n C21 O20 OLC sing 255 n n C1 O19 OLC doub 256 n n C1 O20 OLC sing 257 n n C22 O23 OLC sing 258 n n C18 H18 OLC sing 259 n n C18 H18A OLC sing 260 n n C18 H18B OLC sing 261 n n C10 H10 OLC sing 262 n n C9 H9 OLC sing 263 n n C17 H17 OLC sing 264 n n C17 H17A OLC sing 265 n n C11 H11 OLC sing 266 n n C11 H11A OLC sing 267 n n C8 H8 OLC sing 268 n n C8 H8A OLC sing 269 n n C24 H24 OLC sing 270 n n C24 H24A OLC sing 271 n n C16 H16 OLC sing 272 n n C16 H16A OLC sing 273 n n C12 H12 OLC sing 274 n n C12 H12A OLC sing 275 n n C7 H7 OLC sing 276 n n C7 H7A OLC sing 277 n n C15 H15 OLC sing 278 n n C15 H15A OLC sing 279 n n C13 H13 OLC sing 280 n n C13 H13A OLC sing 281 n n C6 H6 OLC sing 282 n n C6 H6A OLC sing 283 n n C14 H14 OLC sing 284 n n C14 H14A OLC sing 285 n n C5 H5 OLC sing 286 n n C5 H5A OLC sing 287 n n C4 H4 OLC sing 288 n n C4 H4A OLC sing 289 n n C3 H3 OLC sing 290 n n C3 H3A OLC sing 291 n n C2 H2 OLC sing 292 n n C2 H2A OLC sing 293 n n C21 H21 OLC sing 294 n n C21 H21A OLC sing 295 n n C22 H22 OLC sing 296 n n O25 HO25 OLC sing 297 n n O23 HO23 OLC sing 298 n n # _atom_sites.entry_id 7D7Q _atom_sites.fract_transf_matrix[1][1] 0.013106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 401 1 RET RET . D 3 OLC A 1 402 1 OLC OLC . E 3 OLC A 1 403 2 OLC OLC . F 3 OLC A 1 404 4 OLC OLC . G 2 RET B 1 401 2 RET RET . H 3 OLC B 1 402 3 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . F 3 40.231 16.735 65.921 1 28.56 ? C18 OLC 404 A 1 HETATM 2 C C10 OLC . . . F 3 34.211 17.328 63.485 1 31.4 ? C10 OLC 404 A 1 HETATM 3 C C9 OLC . . . F 3 34.721 17.46 62.26 1 31.67 ? C9 OLC 404 A 1 HETATM 4 C C17 OLC . . . F 3 38.815 16.986 66.389 1 43.37 ? C17 OLC 404 A 1 HETATM 5 C C11 OLC . . . F 3 35.077 17.012 64.684 1 33.71 ? C11 OLC 404 A 1 HETATM 6 C C8 OLC . . . F 3 36.197 17.278 61.989 1 32.43 ? C8 OLC 404 A 1 HETATM 7 C C24 OLC . . . F 3 40.922 12.673 51.122 1 41.19 ? C24 OLC 404 A 1 HETATM 8 C C16 OLC . . . F 3 38.777 17.385 67.861 1 39.6 ? C16 OLC 404 A 1 HETATM 9 C C12 OLC . . . F 3 34.425 17.588 65.939 1 27.64 ? C12 OLC 404 A 1 HETATM 10 C C7 OLC . . . F 3 36.451 17.162 60.486 1 26.03 ? C7 OLC 404 A 1 HETATM 11 C C15 OLC . . . F 3 37.355 17.29 68.399 1 27.91 ? C15 OLC 404 A 1 HETATM 12 C C13 OLC . . . F 3 35.151 17.146 67.205 1 24.71 ? C13 OLC 404 A 1 HETATM 13 C C6 OLC . . . F 3 35.521 16.156 59.813 1 23.14 ? C6 OLC 404 A 1 HETATM 14 C C14 OLC . . . F 3 36.392 17.994 67.452 1 32.18 ? C14 OLC 404 A 1 HETATM 15 C C5 OLC . . . F 3 36.273 15.268 58.825 1 28.86 ? C5 OLC 404 A 1 HETATM 16 C C4 OLC . . . F 3 36.532 15.954 57.487 1 32.06 ? C4 OLC 404 A 1 HETATM 17 C C3 OLC . . . F 3 37.586 15.197 56.682 1 39.3 ? C3 OLC 404 A 1 HETATM 18 C C2 OLC . . . F 3 37.734 15.753 55.269 1 46.24 ? C2 OLC 404 A 1 HETATM 19 C C21 OLC . . . F 3 40.411 14.354 52.887 1 39.48 ? C21 OLC 404 A 1 HETATM 20 C C1 OLC . . . F 3 39.113 15.427 54.739 1 50.58 ? C1 OLC 404 A 1 HETATM 21 C C22 OLC . . . F 3 40.223 13.995 51.416 1 40.64 ? C22 OLC 404 A 1 HETATM 22 O O19 OLC . . . F 3 40.072 15.38 55.492 1 51.79 ? O19 OLC 404 A 1 HETATM 23 O O25 OLC . . . F 3 40.316 12.056 49.98 1 29.04 ? O25 OLC 404 A 1 HETATM 24 O O23 OLC . . . F 3 38.827 13.872 51.119 1 40.57 ? O23 OLC 404 A 1 HETATM 25 O O20 OLC . . . F 3 39.305 15.142 53.325 1 46.56 ? O20 OLC 404 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #