data_7D7U # _model_server_result.job_id AZPc9FPJ6jppOgGelBbtQw _model_server_result.datetime_utc '2024-11-04 20:49:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d7u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7D7U # _exptl.entry_id 7D7U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.117 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "8-BROMO-ADENOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 105.83 _cell.angle_beta 96.46 _cell.angle_gamma 87.56 _cell.entry_id 7D7U _cell.length_a 47.17 _cell.length_b 65.77 _cell.length_c 40.79 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D7U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H13 Br N5 O7 P' _chem_comp.formula_weight 426.117 _chem_comp.id 8BR _chem_comp.mon_nstd_flag . _chem_comp.name "8-BROMO-ADENOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 8BR doub 1 n n P O2P 8BR sing 2 n n P O3P 8BR sing 3 n n P O5' 8BR sing 4 n n O2P HOP2 8BR sing 5 n n O3P HOP3 8BR sing 6 n n O5' C5' 8BR sing 7 n n C5' C4' 8BR sing 8 n n C5' "H5'1" 8BR sing 9 n n C5' "H5'2" 8BR sing 10 n n C4' O4' 8BR sing 11 n n C4' C3' 8BR sing 12 n n C4' H4' 8BR sing 13 n n O4' C1' 8BR sing 14 n n C3' O3' 8BR sing 15 n n C3' C2' 8BR sing 16 n n C3' H3' 8BR sing 17 n n O3' HO3' 8BR sing 18 n n C2' O2' 8BR sing 19 n n C2' C1' 8BR sing 20 n n C2' H2' 8BR sing 21 n n O2' HO2' 8BR sing 22 n n C1' N9 8BR sing 23 n n C1' H1' 8BR sing 24 n n N9 C8 8BR sing 25 n y N9 C4 8BR sing 26 n y C8 BR8 8BR sing 27 n n C8 N7 8BR doub 28 n y N7 C5 8BR sing 29 n y C5 C6 8BR sing 30 n y C5 C4 8BR doub 31 n y C6 N6 8BR sing 32 n n C6 N1 8BR doub 33 n y N6 HN61 8BR sing 34 n n N6 HN62 8BR sing 35 n n N1 C2 8BR sing 36 n y C2 N3 8BR doub 37 n y C2 H2 8BR sing 38 n n N3 C4 8BR sing 39 n y # _atom_sites.entry_id 7D7U _atom_sites.fract_transf_matrix[1][1] 0.0212 _atom_sites.fract_transf_matrix[1][2] -0.000903 _atom_sites.fract_transf_matrix[1][3] 0.00224 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015218 _atom_sites.fract_transf_matrix[2][3] 0.004267 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 8BR A 1 601 601 8BR 8BR . E 2 8BR B 1 601 601 8BR 8BR . F 2 8BR C 1 601 601 8BR 8BR . G 3 HOH A 1 701 701 HOH HOH . G 3 HOH A 2 702 702 HOH HOH . G 3 HOH A 3 703 703 HOH HOH . G 3 HOH A 4 704 704 HOH HOH . G 3 HOH A 5 705 705 HOH HOH . G 3 HOH A 6 706 706 HOH HOH . G 3 HOH A 7 707 707 HOH HOH . G 3 HOH A 8 708 708 HOH HOH . G 3 HOH A 9 709 709 HOH HOH . G 3 HOH A 10 710 710 HOH HOH . G 3 HOH A 11 711 711 HOH HOH . G 3 HOH A 12 712 712 HOH HOH . G 3 HOH A 13 713 713 HOH HOH . G 3 HOH A 14 714 714 HOH HOH . G 3 HOH A 15 715 715 HOH HOH . G 3 HOH A 16 716 716 HOH HOH . G 3 HOH A 17 717 717 HOH HOH . G 3 HOH A 18 718 718 HOH HOH . G 3 HOH A 19 719 719 HOH HOH . G 3 HOH A 20 720 720 HOH HOH . G 3 HOH A 21 721 721 HOH HOH . G 3 HOH A 22 722 722 HOH HOH . G 3 HOH A 23 723 723 HOH HOH . G 3 HOH A 24 724 724 HOH HOH . G 3 HOH A 25 725 725 HOH HOH . G 3 HOH A 26 726 726 HOH HOH . G 3 HOH A 27 727 727 HOH HOH . G 3 HOH A 28 728 728 HOH HOH . G 3 HOH A 29 729 729 HOH HOH . G 3 HOH A 30 730 730 HOH HOH . G 3 HOH A 31 731 731 HOH HOH . G 3 HOH A 32 732 732 HOH HOH . G 3 HOH A 33 733 733 HOH HOH . G 3 HOH A 34 734 734 HOH HOH . G 3 HOH A 35 735 735 HOH HOH . G 3 HOH A 36 736 736 HOH HOH . G 3 HOH A 37 737 737 HOH HOH . G 3 HOH A 38 738 738 HOH HOH . G 3 HOH A 39 739 739 HOH HOH . G 3 HOH A 40 740 740 HOH HOH . G 3 HOH A 41 741 741 HOH HOH . G 3 HOH A 42 742 742 HOH HOH . G 3 HOH A 43 743 743 HOH HOH . G 3 HOH A 44 744 744 HOH HOH . G 3 HOH A 45 745 745 HOH HOH . G 3 HOH A 46 746 746 HOH HOH . G 3 HOH A 47 747 747 HOH HOH . G 3 HOH A 48 748 748 HOH HOH . G 3 HOH A 49 749 749 HOH HOH . G 3 HOH A 50 750 750 HOH HOH . G 3 HOH A 51 751 751 HOH HOH . G 3 HOH A 52 752 752 HOH HOH . G 3 HOH A 53 753 753 HOH HOH . G 3 HOH A 54 754 754 HOH HOH . G 3 HOH A 55 755 755 HOH HOH . G 3 HOH A 56 756 756 HOH HOH . G 3 HOH A 57 757 757 HOH HOH . G 3 HOH A 58 758 758 HOH HOH . G 3 HOH A 59 759 759 HOH HOH . G 3 HOH A 60 760 760 HOH HOH . G 3 HOH A 61 761 761 HOH HOH . G 3 HOH A 62 762 762 HOH HOH . G 3 HOH A 63 763 763 HOH HOH . G 3 HOH A 64 764 764 HOH HOH . G 3 HOH A 65 765 765 HOH HOH . G 3 HOH A 66 766 766 HOH HOH . G 3 HOH A 67 767 767 HOH HOH . G 3 HOH A 68 768 768 HOH HOH . G 3 HOH A 69 769 769 HOH HOH . G 3 HOH A 70 770 770 HOH HOH . G 3 HOH A 71 771 771 HOH HOH . G 3 HOH A 72 772 772 HOH HOH . G 3 HOH A 73 773 773 HOH HOH . G 3 HOH A 74 774 774 HOH HOH . G 3 HOH A 75 775 775 HOH HOH . G 3 HOH A 76 776 776 HOH HOH . G 3 HOH A 77 777 777 HOH HOH . G 3 HOH A 78 778 778 HOH HOH . G 3 HOH A 79 779 779 HOH HOH . G 3 HOH A 80 780 780 HOH HOH . G 3 HOH A 81 781 781 HOH HOH . G 3 HOH A 82 782 782 HOH HOH . G 3 HOH A 83 783 783 HOH HOH . G 3 HOH A 84 784 784 HOH HOH . G 3 HOH A 85 785 785 HOH HOH . G 3 HOH A 86 786 786 HOH HOH . G 3 HOH A 87 787 787 HOH HOH . G 3 HOH A 88 788 788 HOH HOH . G 3 HOH A 89 789 789 HOH HOH . G 3 HOH A 90 790 790 HOH HOH . G 3 HOH A 91 791 791 HOH HOH . G 3 HOH A 92 792 792 HOH HOH . G 3 HOH A 93 793 793 HOH HOH . G 3 HOH A 94 794 794 HOH HOH . G 3 HOH A 95 795 795 HOH HOH . G 3 HOH A 96 796 796 HOH HOH . G 3 HOH A 97 797 797 HOH HOH . G 3 HOH A 98 798 798 HOH HOH . G 3 HOH A 99 799 799 HOH HOH . G 3 HOH A 100 800 800 HOH HOH . G 3 HOH A 101 801 801 HOH HOH . G 3 HOH A 102 802 802 HOH HOH . G 3 HOH A 103 803 803 HOH HOH . H 3 HOH B 1 701 701 HOH HOH . H 3 HOH B 2 702 702 HOH HOH . H 3 HOH B 3 703 703 HOH HOH . H 3 HOH B 4 704 704 HOH HOH . H 3 HOH B 5 705 705 HOH HOH . H 3 HOH B 6 706 706 HOH HOH . H 3 HOH B 7 707 707 HOH HOH . H 3 HOH B 8 708 708 HOH HOH . H 3 HOH B 9 709 709 HOH HOH . H 3 HOH B 10 710 710 HOH HOH . H 3 HOH B 11 711 711 HOH HOH . H 3 HOH B 12 712 712 HOH HOH . H 3 HOH B 13 713 713 HOH HOH . H 3 HOH B 14 714 714 HOH HOH . H 3 HOH B 15 715 715 HOH HOH . H 3 HOH B 16 716 716 HOH HOH . H 3 HOH B 17 717 717 HOH HOH . H 3 HOH B 18 718 718 HOH HOH . H 3 HOH B 19 719 719 HOH HOH . H 3 HOH B 20 720 720 HOH HOH . H 3 HOH B 21 721 721 HOH HOH . H 3 HOH B 22 722 722 HOH HOH . H 3 HOH B 23 723 723 HOH HOH . H 3 HOH B 24 724 724 HOH HOH . H 3 HOH B 25 725 725 HOH HOH . H 3 HOH B 26 726 726 HOH HOH . H 3 HOH B 27 727 727 HOH HOH . H 3 HOH B 28 728 728 HOH HOH . H 3 HOH B 29 729 729 HOH HOH . H 3 HOH B 30 730 730 HOH HOH . H 3 HOH B 31 731 731 HOH HOH . H 3 HOH B 32 732 732 HOH HOH . H 3 HOH B 33 733 733 HOH HOH . H 3 HOH B 34 734 734 HOH HOH . H 3 HOH B 35 735 735 HOH HOH . H 3 HOH B 36 736 736 HOH HOH . H 3 HOH B 37 737 737 HOH HOH . H 3 HOH B 38 738 738 HOH HOH . H 3 HOH B 39 739 739 HOH HOH . H 3 HOH B 40 740 740 HOH HOH . H 3 HOH B 41 741 741 HOH HOH . H 3 HOH B 42 742 742 HOH HOH . H 3 HOH B 43 743 743 HOH HOH . H 3 HOH B 44 744 744 HOH HOH . H 3 HOH B 45 745 745 HOH HOH . H 3 HOH B 46 746 746 HOH HOH . H 3 HOH B 47 747 747 HOH HOH . H 3 HOH B 48 748 748 HOH HOH . H 3 HOH B 49 749 749 HOH HOH . H 3 HOH B 50 750 750 HOH HOH . H 3 HOH B 51 751 751 HOH HOH . H 3 HOH B 52 752 752 HOH HOH . H 3 HOH B 53 753 753 HOH HOH . H 3 HOH B 54 754 754 HOH HOH . H 3 HOH B 55 755 755 HOH HOH . H 3 HOH B 56 756 756 HOH HOH . H 3 HOH B 57 757 757 HOH HOH . H 3 HOH B 58 758 758 HOH HOH . H 3 HOH B 59 759 759 HOH HOH . I 3 HOH C 1 701 701 HOH HOH . I 3 HOH C 2 702 702 HOH HOH . I 3 HOH C 3 703 703 HOH HOH . I 3 HOH C 4 704 704 HOH HOH . I 3 HOH C 5 705 705 HOH HOH . I 3 HOH C 6 706 706 HOH HOH . I 3 HOH C 7 707 707 HOH HOH . I 3 HOH C 8 708 708 HOH HOH . I 3 HOH C 9 709 709 HOH HOH . I 3 HOH C 10 710 710 HOH HOH . I 3 HOH C 11 711 711 HOH HOH . I 3 HOH C 12 712 712 HOH HOH . I 3 HOH C 13 713 713 HOH HOH . I 3 HOH C 14 714 714 HOH HOH . I 3 HOH C 15 715 715 HOH HOH . I 3 HOH C 16 716 716 HOH HOH . I 3 HOH C 17 717 717 HOH HOH . I 3 HOH C 18 718 718 HOH HOH . I 3 HOH C 19 719 719 HOH HOH . I 3 HOH C 20 720 720 HOH HOH . I 3 HOH C 21 721 721 HOH HOH . I 3 HOH C 22 722 722 HOH HOH . I 3 HOH C 23 723 723 HOH HOH . I 3 HOH C 24 724 724 HOH HOH . I 3 HOH C 25 725 725 HOH HOH . I 3 HOH C 26 726 726 HOH HOH . I 3 HOH C 27 727 727 HOH HOH . I 3 HOH C 28 728 728 HOH HOH . I 3 HOH C 29 729 729 HOH HOH . I 3 HOH C 30 730 730 HOH HOH . I 3 HOH C 31 731 731 HOH HOH . I 3 HOH C 32 732 732 HOH HOH . I 3 HOH C 33 733 733 HOH HOH . I 3 HOH C 34 734 734 HOH HOH . I 3 HOH C 35 735 735 HOH HOH . I 3 HOH C 36 736 736 HOH HOH . I 3 HOH C 37 737 737 HOH HOH . I 3 HOH C 38 738 738 HOH HOH . I 3 HOH C 39 739 739 HOH HOH . I 3 HOH C 40 740 740 HOH HOH . I 3 HOH C 41 741 741 HOH HOH . I 3 HOH C 42 742 742 HOH HOH . I 3 HOH C 43 743 743 HOH HOH . I 3 HOH C 44 744 744 HOH HOH . I 3 HOH C 45 745 745 HOH HOH . I 3 HOH C 46 746 746 HOH HOH . I 3 HOH C 47 747 747 HOH HOH . I 3 HOH C 48 748 748 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 8BR . . . F 2 9.692 36.165 18.682 1 37.14 ? P 8BR 601 C 1 HETATM 2 O O1P 8BR . . . F 2 8.984 36.032 17.35 1 29.13 ? O1P 8BR 601 C 1 HETATM 3 O O2P 8BR . . . F 2 11.198 36.368 18.509 1 31.67 ? O2P 8BR 601 C 1 HETATM 4 O O3P 8BR . . . F 2 9.055 37.191 19.654 1 34.15 ? O3P 8BR 601 C 1 HETATM 5 O O5' 8BR . . . F 2 9.463 34.752 19.417 1 36.14 ? O5' 8BR 601 C 1 HETATM 6 C C5' 8BR . . . F 2 9.266 34.734 20.855 1 39.62 ? C5' 8BR 601 C 1 HETATM 7 C C4' 8BR . . . F 2 9.082 33.315 21.329 1 40.81 ? C4' 8BR 601 C 1 HETATM 8 O O4' 8BR . . . F 2 9.9 32.43 20.529 1 42.22 ? O4' 8BR 601 C 1 HETATM 9 C C3' 8BR . . . F 2 9.517 33.048 22.771 1 43.15 ? C3' 8BR 601 C 1 HETATM 10 O O3' 8BR . . . F 2 8.42 33.18 23.665 1 45.09 ? O3' 8BR 601 C 1 HETATM 11 C C2' 8BR . . . F 2 10.044 31.608 22.75 1 43.65 ? C2' 8BR 601 C 1 HETATM 12 O O2' 8BR . . . F 2 9.134 30.797 23.456 1 49.58 ? O2' 8BR 601 C 1 HETATM 13 C C1' 8BR . . . F 2 10.143 31.248 21.261 1 47.77 ? C1' 8BR 601 C 1 HETATM 14 N N9 8BR . . . F 2 11.455 30.677 20.855 1 55.05 ? N9 8BR 601 C 1 HETATM 15 C C8 8BR . . . F 2 12.699 31.273 20.85 1 59.65 ? C8 8BR 601 C 1 HETATM 16 BR BR8 8BR . . . F 2 13.056 33.011 21.374 1 83.56 ? BR8 8BR 601 C 1 HETATM 17 N N7 8BR . . . F 2 13.646 30.459 20.441 1 50.32 ? N7 8BR 601 C 1 HETATM 18 C C5 8BR . . . F 2 13.005 29.276 20.132 1 53.18 ? C5 8BR 601 C 1 HETATM 19 C C6 8BR . . . F 2 13.462 28.048 19.637 1 56.9 ? C6 8BR 601 C 1 HETATM 20 N N6 8BR . . . F 2 14.733 27.784 19.34 1 58.92 ? N6 8BR 601 C 1 HETATM 21 N N1 8BR . . . F 2 12.531 27.098 19.416 1 55.52 ? N1 8BR 601 C 1 HETATM 22 C C2 8BR . . . F 2 11.256 27.364 19.701 1 50.05 ? C2 8BR 601 C 1 HETATM 23 N N3 8BR . . . F 2 10.718 28.459 20.206 1 48.5 ? N3 8BR 601 C 1 HETATM 24 C C4 8BR . . . F 2 11.652 29.398 20.383 1 54.81 ? C4 8BR 601 C 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #