data_7D83 # _model_server_result.job_id Lu8DgXmeKX65qt8xi7vCYw _model_server_result.datetime_utc '2024-10-11 03:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7D83 # _exptl.entry_id 7D83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.664 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[2-(cyclohexylcarbamoylamino)-3,6-dimethyl-5-(5-methyl-3,4-dihydro-2H-chromen-6-yl)pyridin-4-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7D83 _cell.length_a 72.312 _cell.length_b 72.312 _cell.length_c 65.845 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 21.948333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 18 A ASP 64 1_555 A N CAF 19 A CAF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C CAF 19 A CAF 65 1_555 A N THR 20 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C ALA 83 A ALA 129 1_555 A N CAF 84 A CAF 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C CAF 84 A CAF 130 1_555 A N TRP 85 A TRP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C30 H41 N3 O5' _chem_comp.formula_weight 523.664 _chem_comp.id GZ9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[2-(cyclohexylcarbamoylamino)-3,6-dimethyl-5-(5-methyl-3,4-dihydro-2H-chromen-6-yl)pyridin-4-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 GZ9 sing 151 n n C7 C8 GZ9 sing 152 n n C16 C15 GZ9 sing 153 n n C6 C5 GZ9 sing 154 n n C17 C15 GZ9 sing 155 n n C15 C18 GZ9 sing 156 n n C15 O2 GZ9 sing 157 n n C8 C9 GZ9 sing 158 n n C5 N3 GZ9 sing 159 n n C5 C10 GZ9 sing 160 n n N3 C4 GZ9 sing 161 n n C4 O1 GZ9 doub 162 n n C4 N2 GZ9 sing 163 n n C22 C23 GZ9 doub 164 n y C22 C21 GZ9 sing 165 n y C23 C24 GZ9 sing 166 n y N2 C3 GZ9 sing 167 n n O2 C14 GZ9 sing 168 n n C9 C10 GZ9 sing 169 n n N1 C3 GZ9 doub 170 n y N1 C2 GZ9 sing 171 n y C3 C11 GZ9 sing 172 n y C1 C2 GZ9 sing 173 n n C2 C20 GZ9 doub 174 n y C11 C12 GZ9 sing 175 n n C11 C13 GZ9 doub 176 n y C13 C20 GZ9 sing 177 n y C13 C14 GZ9 sing 178 n n C20 C21 GZ9 sing 179 n n C21 C29 GZ9 doub 180 n y C14 C19 GZ9 sing 181 n n C24 O5 GZ9 sing 182 n n C24 C28 GZ9 doub 183 n y O5 C25 GZ9 sing 184 n n C29 C28 GZ9 sing 185 n y C29 C30 GZ9 sing 186 n n C28 C27 GZ9 sing 187 n n C25 C26 GZ9 sing 188 n n C19 O4 GZ9 doub 189 n n C19 O3 GZ9 sing 190 n n C26 C27 GZ9 sing 191 n n C1 H1 GZ9 sing 192 n n C1 H2 GZ9 sing 193 n n C1 H3 GZ9 sing 194 n n C5 H4 GZ9 sing 195 n n C6 H5 GZ9 sing 196 n n C6 H6 GZ9 sing 197 n n N2 H7 GZ9 sing 198 n n N3 H8 GZ9 sing 199 n n C7 H9 GZ9 sing 200 n n C7 H10 GZ9 sing 201 n n C8 H11 GZ9 sing 202 n n C8 H12 GZ9 sing 203 n n C9 H13 GZ9 sing 204 n n C9 H14 GZ9 sing 205 n n C10 H15 GZ9 sing 206 n n C10 H16 GZ9 sing 207 n n C12 H17 GZ9 sing 208 n n C12 H18 GZ9 sing 209 n n C12 H19 GZ9 sing 210 n n C14 H20 GZ9 sing 211 n n C16 H21 GZ9 sing 212 n n C16 H22 GZ9 sing 213 n n C16 H23 GZ9 sing 214 n n C17 H24 GZ9 sing 215 n n C17 H25 GZ9 sing 216 n n C17 H26 GZ9 sing 217 n n C18 H27 GZ9 sing 218 n n C18 H28 GZ9 sing 219 n n C18 H29 GZ9 sing 220 n n O3 H30 GZ9 sing 221 n n C22 H31 GZ9 sing 222 n n C23 H32 GZ9 sing 223 n n C30 H33 GZ9 sing 224 n n C30 H34 GZ9 sing 225 n n C30 H35 GZ9 sing 226 n n C25 H36 GZ9 sing 227 n n C25 H37 GZ9 sing 228 n n C26 H38 GZ9 sing 229 n n C26 H39 GZ9 sing 230 n n C27 H40 GZ9 sing 231 n n C27 H41 GZ9 sing 232 n n # _atom_sites.entry_id 7D83 _atom_sites.fract_transf_matrix[1][1] 0.013829 _atom_sites.fract_transf_matrix[1][2] 0.007984 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 2 SO4 A 1 303 3 SO4 SO4 . E 3 GZ9 A 1 304 1 GZ9 MOL . F 4 HOH A 1 401 7 HOH HOH . F 4 HOH A 2 402 20 HOH HOH . F 4 HOH A 3 403 22 HOH HOH . F 4 HOH A 4 404 17 HOH HOH . F 4 HOH A 5 405 1 HOH HOH . F 4 HOH A 6 406 19 HOH HOH . F 4 HOH A 7 407 21 HOH HOH . F 4 HOH A 8 408 4 HOH HOH . F 4 HOH A 9 409 23 HOH HOH . F 4 HOH A 10 410 9 HOH HOH . F 4 HOH A 11 411 8 HOH HOH . F 4 HOH A 12 412 5 HOH HOH . F 4 HOH A 13 413 6 HOH HOH . F 4 HOH A 14 414 15 HOH HOH . F 4 HOH A 15 415 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GZ9 . . . E 3 28.722 -14.643 17.231 1 43.95 ? C1 GZ9 304 A 1 HETATM 2 C C2 GZ9 . . . E 3 27.251 -14.43 17.253 1 45.1 ? C2 GZ9 304 A 1 HETATM 3 C C3 GZ9 . . . E 3 25.454 -12.999 17.021 1 48.58 ? C3 GZ9 304 A 1 HETATM 4 C C4 GZ9 . . . E 3 25.646 -10.733 16.61 1 55.68 ? C4 GZ9 304 A 1 HETATM 5 C C5 GZ9 . . . E 3 27.748 -9.729 16.067 1 60.5 ? C5 GZ9 304 A 1 HETATM 6 C C6 GZ9 . . . E 3 28.812 -10.171 15.087 1 61.1 ? C6 GZ9 304 A 1 HETATM 7 N N1 GZ9 . . . E 3 26.761 -13.215 17.008 1 47.16 ? N1 GZ9 304 A 1 HETATM 8 N N2 GZ9 . . . E 3 24.936 -11.802 16.775 1 52.36 ? N2 GZ9 304 A 1 HETATM 9 N N3 GZ9 . . . E 3 26.917 -10.86 16.395 1 58.49 ? N3 GZ9 304 A 1 HETATM 10 O O1 GZ9 . . . E 3 25.14 -9.663 16.66 1 56.16 ? O1 GZ9 304 A 1 HETATM 11 C C7 GZ9 . . . E 3 29.674 -9.01 14.641 1 61.7 ? C7 GZ9 304 A 1 HETATM 12 C C8 GZ9 . . . E 3 30.372 -8.386 15.827 1 61.83 ? C8 GZ9 304 A 1 HETATM 13 C C9 GZ9 . . . E 3 29.408 -8.071 16.958 1 61.84 ? C9 GZ9 304 A 1 HETATM 14 C C10 GZ9 . . . E 3 28.467 -9.217 17.3 1 61.35 ? C10 GZ9 304 A 1 HETATM 15 C C11 GZ9 . . . E 3 24.598 -14.01 17.281 1 45.9 ? C11 GZ9 304 A 1 HETATM 16 C C12 GZ9 . . . E 3 23.141 -13.739 17.292 1 45.61 ? C12 GZ9 304 A 1 HETATM 17 C C13 GZ9 . . . E 3 25.069 -15.252 17.54 1 44.14 ? C13 GZ9 304 A 1 HETATM 18 C C14 GZ9 . . . E 3 24.103 -16.327 17.838 1 42.84 ? C14 GZ9 304 A 1 HETATM 19 C C15 GZ9 . . . E 3 23.143 -17.017 15.748 1 42.05 ? C15 GZ9 304 A 1 HETATM 20 O O2 GZ9 . . . E 3 23.019 -16.288 16.937 1 42.22 ? O2 GZ9 304 A 1 HETATM 21 C C16 GZ9 . . . E 3 24.051 -16.255 14.836 1 41.58 ? C16 GZ9 304 A 1 HETATM 22 C C17 GZ9 . . . E 3 21.772 -17.121 15.135 1 41.99 ? C17 GZ9 304 A 1 HETATM 23 C C18 GZ9 . . . E 3 23.669 -18.4 16.001 1 41.45 ? C18 GZ9 304 A 1 HETATM 24 C C19 GZ9 . . . E 3 23.584 -16.212 19.248 1 42.29 ? C19 GZ9 304 A 1 HETATM 25 O O3 GZ9 . . . E 3 24.274 -15.749 20.133 1 42.14 ? O3 GZ9 304 A 1 HETATM 26 O O4 GZ9 . . . E 3 22.474 -16.633 19.523 1 41.1 ? O4 GZ9 304 A 1 HETATM 27 C C20 GZ9 . . . E 3 26.424 -15.469 17.541 1 43.55 ? C20 GZ9 304 A 1 HETATM 28 C C21 GZ9 . . . E 3 26.94 -16.834 17.779 1 42.19 ? C21 GZ9 304 A 1 HETATM 29 C C22 GZ9 . . . E 3 27.104 -17.615 16.657 1 41.62 ? C22 GZ9 304 A 1 HETATM 30 C C23 GZ9 . . . E 3 27.559 -18.897 16.748 1 41.15 ? C23 GZ9 304 A 1 HETATM 31 C C24 GZ9 . . . E 3 27.842 -19.423 17.972 1 40.11 ? C24 GZ9 304 A 1 HETATM 32 C C28 GZ9 . . . E 3 27.666 -18.661 19.098 1 40.45 ? C28 GZ9 304 A 1 HETATM 33 C C29 GZ9 . . . E 3 27.215 -17.371 19.006 1 41.39 ? C29 GZ9 304 A 1 HETATM 34 C C30 GZ9 . . . E 3 27.051 -16.552 20.237 1 41.26 ? C30 GZ9 304 A 1 HETATM 35 O O5 GZ9 . . . E 3 28.258 -20.698 18.036 1 39.58 ? O5 GZ9 304 A 1 HETATM 36 C C25 GZ9 . . . E 3 28.144 -21.394 19.242 1 40.21 ? C25 GZ9 304 A 1 HETATM 37 C C26 GZ9 . . . E 3 28.723 -20.534 20.33 1 40.11 ? C26 GZ9 304 A 1 HETATM 38 C C27 GZ9 . . . E 3 27.97 -19.232 20.446 1 40.13 ? C27 GZ9 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #