data_7D85
#
_model_server_result.job_id            AAngQCBk1w54NdHdLIjHwg 
_model_server_result.datetime_utc      '2024-11-21 14:00:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d85 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":602}' 
#
_entry.id    7D85 
#
_exptl.entry_id    7D85 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.41 
_cell.angle_gamma         90 
_cell.entry_id            7D85 
_cell.length_a            92.29 
_cell.length_b            77.78 
_cell.length_c            93.94 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D85 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,N,O,P 1 1 
D,E,F,K,L,M,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 312 1_555 A SG CYS 29 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 138 A CYS 444 1_555 A SG CYS 168 A CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
disulf ? disulf3 A SG CYS 175 A CYS 481 1_555 A SG CYS 184 A CYS 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 A SG CYS 179 A CYS 485 1_555 A SG CYS 192 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 B SG CYS 148 B CYS 148 1_555 B SG CYS 204 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf7 C SG CYS 22 C CYS 22 1_555 C SG CYS 89 C CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf8 C SG CYS 138 C CYS 138 1_555 C SG CYS 197 C CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf9 D SG CYS 6 D CYS 312 1_555 D SG CYS 29 D CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf10 D SG CYS 138 D CYS 444 1_555 D SG CYS 168 D CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf11 D SG CYS 175 D CYS 481 1_555 D SG CYS 184 D CYS 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf12 D SG CYS 179 D CYS 485 1_555 D SG CYS 192 D CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
disulf ? disulf13 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf14 E SG CYS 148 E CYS 148 1_555 E SG CYS 204 E CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf15 F SG CYS 22 F CYS 22 1_555 F SG CYS 89 F CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf16 F SG CYS 138 F CYS 138 1_555 F SG CYS 197 F CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
covale ? covale1 A ND2 ASN 83 A ASN 389 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 89 A ASN 395 1_555 H C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale3 A ND2 ASN 112 A ASN 418 1_555 J C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? 
covale ? covale4 D ND2 ASN 83 D ASN 389 1_555 K C1 NAG . D NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? 
covale ? covale5 D ND2 ASN 89 D ASN 395 1_555 L C1 NAG . D NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale6 D ND2 ASN 112 D ASN 418 1_555 M C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7D85 
_atom_sites.fract_transf_matrix[1][1]    0.010835 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004691 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 601 601 NAG NAG . 
H 4 NAG A 1 602 701 NAG NAG . 
I 4 NAG A 1 603 801 NAG NAG . 
J 4 NAG A 1 604 901 NAG NAG . 
K 4 NAG D 1 601 601 NAG NAG . 
L 4 NAG D 1 602 701 NAG NAG . 
M 4 NAG D 1 603 801 NAG NAG . 
N 5 HOH A 1 701 17 HOH HOH . 
N 5 HOH A 2 702 23 HOH HOH . 
N 5 HOH A 3 703 22 HOH HOH . 
N 5 HOH A 4 704 14 HOH HOH . 
N 5 HOH A 5 705 32 HOH HOH . 
N 5 HOH A 6 706 13 HOH HOH . 
O 5 HOH B 1 301 29 HOH HOH . 
O 5 HOH B 2 302 11 HOH HOH . 
O 5 HOH B 3 303 12 HOH HOH . 
O 5 HOH B 4 304 24 HOH HOH . 
O 5 HOH B 5 305 15 HOH HOH . 
O 5 HOH B 6 306 18 HOH HOH . 
O 5 HOH B 7 307 38 HOH HOH . 
O 5 HOH B 8 308 28 HOH HOH . 
O 5 HOH B 9 309 34 HOH HOH . 
O 5 HOH B 10 310 8 HOH HOH . 
O 5 HOH B 11 311 27 HOH HOH . 
O 5 HOH B 12 312 36 HOH HOH . 
O 5 HOH B 13 313 31 HOH HOH . 
O 5 HOH B 14 314 30 HOH HOH . 
P 5 HOH C 1 301 25 HOH HOH . 
P 5 HOH C 2 302 6 HOH HOH . 
P 5 HOH C 3 303 7 HOH HOH . 
P 5 HOH C 4 304 16 HOH HOH . 
P 5 HOH C 5 305 5 HOH HOH . 
P 5 HOH C 6 306 10 HOH HOH . 
P 5 HOH C 7 307 35 HOH HOH . 
Q 5 HOH D 1 701 4 HOH HOH . 
R 5 HOH E 1 301 20 HOH HOH . 
R 5 HOH E 2 302 39 HOH HOH . 
R 5 HOH E 3 303 37 HOH HOH . 
R 5 HOH E 4 304 26 HOH HOH . 
R 5 HOH E 5 305 9 HOH HOH . 
R 5 HOH E 6 306 3 HOH HOH . 
R 5 HOH E 7 307 2 HOH HOH . 
S 5 HOH F 1 301 33 HOH HOH . 
S 5 HOH F 2 302 1 HOH HOH . 
S 5 HOH F 3 303 21 HOH HOH . 
S 5 HOH F 4 304 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 4 32.522 -15.217 -29.186 1 62.97 ? C1 NAG 602 D 1 
HETATM 2 C C2 NAG . . . L 4 32.589 -14.012 -30.093 1 60.74 ? C2 NAG 602 D 1 
HETATM 3 C C3 NAG . . . L 4 32.473 -14.388 -31.533 1 57.46 ? C3 NAG 602 D 1 
HETATM 4 C C4 NAG . . . L 4 33.539 -15.396 -31.763 1 65.21 ? C4 NAG 602 D 1 
HETATM 5 C C5 NAG . . . L 4 33.183 -16.601 -30.954 1 59.2 ? C5 NAG 602 D 1 
HETATM 6 C C6 NAG . . . L 4 34.178 -17.691 -31.168 1 57.35 ? C6 NAG 602 D 1 
HETATM 7 C C7 NAG . . . L 4 31.785 -11.878 -29.57 1 64.05 ? C7 NAG 602 D 1 
HETATM 8 C C8 NAG . . . L 4 30.672 -10.924 -29.771 1 55.18 ? C8 NAG 602 D 1 
HETATM 9 N N2 NAG . . . L 4 31.512 -13.123 -29.8 1 62.64 ? N2 NAG 602 D 1 
HETATM 10 O O3 NAG . . . L 4 32.836 -13.293 -32.336 1 53.98 ? O3 NAG 602 D 1 
HETATM 11 O O4 NAG . . . L 4 33.634 -15.67 -33.162 1 70.44 ? O4 NAG 602 D 1 
HETATM 12 O O5 NAG . . . L 4 33.364 -16.243 -29.641 1 59.54 ? O5 NAG 602 D 1 
HETATM 13 O O6 NAG . . . L 4 35.439 -17.108 -31.145 1 53.99 ? O6 NAG 602 D 1 
HETATM 14 O O7 NAG . . . L 4 32.887 -11.535 -29.245 1 61.86 ? O7 NAG 602 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#