data_7D86 # _model_server_result.job_id Xhoh2iy3bHRIIz6At6BzHg _model_server_result.datetime_utc '2024-11-09 02:38:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7D86 # _exptl.entry_id 7D86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.95 _cell.angle_gamma 90 _cell.entry_id 7D86 _cell.length_a 42.193 _cell.length_b 41.907 _cell.length_c 52.878 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 12 A CYS 288 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A SG CYS 15 A CYS 291 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 A SG CYS 29 A CYS 305 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 A SG CYS 32 A CYS 308 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc5 A ND1 HIS 37 A HIS 313 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc6 A SG CYS 40 A CYS 316 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 A SG CYS 64 A CYS 340 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc8 A SG CYS 67 A CYS 343 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc9 A SG CYS 75 A CYS 351 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc10 A SG CYS 78 A CYS 354 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc11 A ND1 HIS 95 A HIS 371 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc12 A SG CYS 98 A CYS 374 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc13 A SG CYS 131 A CYS 407 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc14 A SG CYS 134 A CYS 410 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc15 A SG CYS 148 A CYS 424 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc16 A SG CYS 153 A CYS 429 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc17 A ND1 HIS 158 A HIS 434 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc18 A SG CYS 161 A CYS 437 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc19 A OD1 ASP 179 A ASP 455 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc20 A OD2 ASP 179 A ASP 455 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc21 A SG CYS 185 A CYS 461 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc22 A ND1 HIS 188 A HIS 464 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc23 G MG MG . A MG 506 1_555 I O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc24 G MG MG . A MG 506 1_555 I O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc25 G MG MG . A MG 506 1_555 I O HOH . A HOH 636 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc26 G MG MG . A MG 506 1_555 I O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc27 G MG MG . A MG 506 1_555 I O HOH . A HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7D86 _atom_sites.fract_transf_matrix[1][1] 0.023701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003735 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 2 ZN A 1 502 2 ZN ZN . D 2 ZN A 1 503 3 ZN ZN . E 2 ZN A 1 504 4 ZN ZN . F 2 ZN A 1 505 5 ZN ZN . G 3 MG A 1 506 1 MG MG . H 4 EDO A 1 507 1 EDO EDO . I 5 HOH A 1 601 77 HOH HOH . I 5 HOH A 2 602 5 HOH HOH . I 5 HOH A 3 603 2 HOH HOH . I 5 HOH A 4 604 3 HOH HOH . I 5 HOH A 5 605 24 HOH HOH . I 5 HOH A 6 606 66 HOH HOH . I 5 HOH A 7 607 76 HOH HOH . I 5 HOH A 8 608 4 HOH HOH . I 5 HOH A 9 609 80 HOH HOH . I 5 HOH A 10 610 85 HOH HOH . I 5 HOH A 11 611 15 HOH HOH . I 5 HOH A 12 612 21 HOH HOH . I 5 HOH A 13 613 91 HOH HOH . I 5 HOH A 14 614 83 HOH HOH . I 5 HOH A 15 615 39 HOH HOH . I 5 HOH A 16 616 71 HOH HOH . I 5 HOH A 17 617 81 HOH HOH . I 5 HOH A 18 618 43 HOH HOH . I 5 HOH A 19 619 29 HOH HOH . I 5 HOH A 20 620 38 HOH HOH . I 5 HOH A 21 621 74 HOH HOH . I 5 HOH A 22 622 64 HOH HOH . I 5 HOH A 23 623 63 HOH HOH . I 5 HOH A 24 624 22 HOH HOH . I 5 HOH A 25 625 6 HOH HOH . I 5 HOH A 26 626 56 HOH HOH . I 5 HOH A 27 627 28 HOH HOH . I 5 HOH A 28 628 54 HOH HOH . I 5 HOH A 29 629 16 HOH HOH . I 5 HOH A 30 630 25 HOH HOH . I 5 HOH A 31 631 53 HOH HOH . I 5 HOH A 32 632 31 HOH HOH . I 5 HOH A 33 633 92 HOH HOH . I 5 HOH A 34 634 55 HOH HOH . I 5 HOH A 35 635 17 HOH HOH . I 5 HOH A 36 636 78 HOH HOH . I 5 HOH A 37 637 61 HOH HOH . I 5 HOH A 38 638 33 HOH HOH . I 5 HOH A 39 639 73 HOH HOH . I 5 HOH A 40 640 60 HOH HOH . I 5 HOH A 41 641 42 HOH HOH . I 5 HOH A 42 642 14 HOH HOH . I 5 HOH A 43 643 34 HOH HOH . I 5 HOH A 44 644 1 HOH HOH . I 5 HOH A 45 645 62 HOH HOH . I 5 HOH A 46 646 18 HOH HOH . I 5 HOH A 47 647 27 HOH HOH . I 5 HOH A 48 648 67 HOH HOH . I 5 HOH A 49 649 41 HOH HOH . I 5 HOH A 50 650 35 HOH HOH . I 5 HOH A 51 651 30 HOH HOH . I 5 HOH A 52 652 7 HOH HOH . I 5 HOH A 53 653 59 HOH HOH . I 5 HOH A 54 654 52 HOH HOH . I 5 HOH A 55 655 10 HOH HOH . I 5 HOH A 56 656 70 HOH HOH . I 5 HOH A 57 657 12 HOH HOH . I 5 HOH A 58 658 20 HOH HOH . I 5 HOH A 59 659 79 HOH HOH . I 5 HOH A 60 660 26 HOH HOH . I 5 HOH A 61 661 32 HOH HOH . I 5 HOH A 62 662 11 HOH HOH . I 5 HOH A 63 663 19 HOH HOH . I 5 HOH A 64 664 89 HOH HOH . I 5 HOH A 65 665 40 HOH HOH . I 5 HOH A 66 666 58 HOH HOH . I 5 HOH A 67 667 13 HOH HOH . I 5 HOH A 68 668 69 HOH HOH . I 5 HOH A 69 669 44 HOH HOH . I 5 HOH A 70 670 37 HOH HOH . I 5 HOH A 71 671 72 HOH HOH . I 5 HOH A 72 672 23 HOH HOH . I 5 HOH A 73 673 88 HOH HOH . I 5 HOH A 74 674 8 HOH HOH . I 5 HOH A 75 675 9 HOH HOH . I 5 HOH A 76 676 48 HOH HOH . I 5 HOH A 77 677 90 HOH HOH . I 5 HOH A 78 678 82 HOH HOH . I 5 HOH A 79 679 45 HOH HOH . I 5 HOH A 80 680 46 HOH HOH . I 5 HOH A 81 681 57 HOH HOH . I 5 HOH A 82 682 68 HOH HOH . I 5 HOH A 83 683 65 HOH HOH . I 5 HOH A 84 684 47 HOH HOH . I 5 HOH A 85 685 51 HOH HOH . I 5 HOH A 86 686 84 HOH HOH . I 5 HOH A 87 687 75 HOH HOH . I 5 HOH A 88 688 86 HOH HOH . I 5 HOH A 89 689 36 HOH HOH . I 5 HOH A 90 690 87 HOH HOH . I 5 HOH A 91 691 50 HOH HOH . I 5 HOH A 92 692 49 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.601 _atom_site.Cartn_y 3.442 _atom_site.Cartn_z 0.854 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #