data_7D8V # _model_server_result.job_id a0sNidKltCLuPpJOPv5PUQ _model_server_result.datetime_utc '2024-11-05 04:41:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7D8V # _exptl.entry_id 7D8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7D8V _cell.length_a 87.51 _cell.length_b 87.51 _cell.length_c 97.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -65 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 110 A SER 110 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 C O1B ADP . A ADP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 D MG MG . A MG 503 1_555 E O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc4 D MG MG . A MG 503 1_555 E O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 D MG MG . A MG 503 1_555 E O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc6 D MG MG . A MG 503 1_555 E O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 378 n n C C2 TRS sing 379 n n C C3 TRS sing 380 n n C N TRS sing 381 n n C1 O1 TRS sing 382 n n C1 H11 TRS sing 383 n n C1 H12 TRS sing 384 n n C2 O2 TRS sing 385 n n C2 H21 TRS sing 386 n n C2 H22 TRS sing 387 n n C3 O3 TRS sing 388 n n C3 H31 TRS sing 389 n n C3 H32 TRS sing 390 n n N HN1 TRS sing 391 n n N HN2 TRS sing 392 n n N HN3 TRS sing 393 n n O1 HO1 TRS sing 394 n n O2 HO2 TRS sing 395 n n O3 HO3 TRS sing 396 n n # _atom_sites.entry_id 7D8V _atom_sites.fract_transf_matrix[1][1] 0.011427 _atom_sites.fract_transf_matrix[1][2] 0.006598 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 501 401 TRS TRS . C 3 ADP A 1 502 501 ADP ADP . D 4 MG A 1 503 1 MG MG . E 5 HOH A 1 601 103 HOH HOH . E 5 HOH A 2 602 91 HOH HOH . E 5 HOH A 3 603 81 HOH HOH . E 5 HOH A 4 604 110 HOH HOH . E 5 HOH A 5 605 46 HOH HOH . E 5 HOH A 6 606 29 HOH HOH . E 5 HOH A 7 607 51 HOH HOH . E 5 HOH A 8 608 62 HOH HOH . E 5 HOH A 9 609 73 HOH HOH . E 5 HOH A 10 610 7 HOH HOH . E 5 HOH A 11 611 11 HOH HOH . E 5 HOH A 12 612 95 HOH HOH . E 5 HOH A 13 613 14 HOH HOH . E 5 HOH A 14 614 112 HOH HOH . E 5 HOH A 15 615 30 HOH HOH . E 5 HOH A 16 616 52 HOH HOH . E 5 HOH A 17 617 33 HOH HOH . E 5 HOH A 18 618 102 HOH HOH . E 5 HOH A 19 619 17 HOH HOH . E 5 HOH A 20 620 1 HOH HOH . E 5 HOH A 21 621 61 HOH HOH . E 5 HOH A 22 622 69 HOH HOH . E 5 HOH A 23 623 34 HOH HOH . E 5 HOH A 24 624 49 HOH HOH . E 5 HOH A 25 625 96 HOH HOH . E 5 HOH A 26 626 4 HOH HOH . E 5 HOH A 27 627 93 HOH HOH . E 5 HOH A 28 628 63 HOH HOH . E 5 HOH A 29 629 25 HOH HOH . E 5 HOH A 30 630 9 HOH HOH . E 5 HOH A 31 631 108 HOH HOH . E 5 HOH A 32 632 21 HOH HOH . E 5 HOH A 33 633 2 HOH HOH . E 5 HOH A 34 634 86 HOH HOH . E 5 HOH A 35 635 16 HOH HOH . E 5 HOH A 36 636 104 HOH HOH . E 5 HOH A 37 637 18 HOH HOH . E 5 HOH A 38 638 90 HOH HOH . E 5 HOH A 39 639 76 HOH HOH . E 5 HOH A 40 640 89 HOH HOH . E 5 HOH A 41 641 27 HOH HOH . E 5 HOH A 42 642 45 HOH HOH . E 5 HOH A 43 643 31 HOH HOH . E 5 HOH A 44 644 26 HOH HOH . E 5 HOH A 45 645 92 HOH HOH . E 5 HOH A 46 646 43 HOH HOH . E 5 HOH A 47 647 56 HOH HOH . E 5 HOH A 48 648 66 HOH HOH . E 5 HOH A 49 649 94 HOH HOH . E 5 HOH A 50 650 28 HOH HOH . E 5 HOH A 51 651 20 HOH HOH . E 5 HOH A 52 652 24 HOH HOH . E 5 HOH A 53 653 111 HOH HOH . E 5 HOH A 54 654 19 HOH HOH . E 5 HOH A 55 655 53 HOH HOH . E 5 HOH A 56 656 36 HOH HOH . E 5 HOH A 57 657 38 HOH HOH . E 5 HOH A 58 658 101 HOH HOH . E 5 HOH A 59 659 15 HOH HOH . E 5 HOH A 60 660 77 HOH HOH . E 5 HOH A 61 661 10 HOH HOH . E 5 HOH A 62 662 48 HOH HOH . E 5 HOH A 63 663 57 HOH HOH . E 5 HOH A 64 664 8 HOH HOH . E 5 HOH A 65 665 5 HOH HOH . E 5 HOH A 66 666 97 HOH HOH . E 5 HOH A 67 667 75 HOH HOH . E 5 HOH A 68 668 44 HOH HOH . E 5 HOH A 69 669 35 HOH HOH . E 5 HOH A 70 670 23 HOH HOH . E 5 HOH A 71 671 64 HOH HOH . E 5 HOH A 72 672 47 HOH HOH . E 5 HOH A 73 673 60 HOH HOH . E 5 HOH A 74 674 85 HOH HOH . E 5 HOH A 75 675 13 HOH HOH . E 5 HOH A 76 676 87 HOH HOH . E 5 HOH A 77 677 71 HOH HOH . E 5 HOH A 78 678 59 HOH HOH . E 5 HOH A 79 679 83 HOH HOH . E 5 HOH A 80 680 105 HOH HOH . E 5 HOH A 81 681 3 HOH HOH . E 5 HOH A 82 682 72 HOH HOH . E 5 HOH A 83 683 67 HOH HOH . E 5 HOH A 84 684 68 HOH HOH . E 5 HOH A 85 685 42 HOH HOH . E 5 HOH A 86 686 70 HOH HOH . E 5 HOH A 87 687 55 HOH HOH . E 5 HOH A 88 688 78 HOH HOH . E 5 HOH A 89 689 58 HOH HOH . E 5 HOH A 90 690 39 HOH HOH . E 5 HOH A 91 691 40 HOH HOH . E 5 HOH A 92 692 54 HOH HOH . E 5 HOH A 93 693 32 HOH HOH . E 5 HOH A 94 694 6 HOH HOH . E 5 HOH A 95 695 22 HOH HOH . E 5 HOH A 96 696 12 HOH HOH . E 5 HOH A 97 697 50 HOH HOH . E 5 HOH A 98 698 98 HOH HOH . E 5 HOH A 99 699 113 HOH HOH . E 5 HOH A 100 700 65 HOH HOH . E 5 HOH A 101 701 37 HOH HOH . E 5 HOH A 102 702 107 HOH HOH . E 5 HOH A 103 703 99 HOH HOH . E 5 HOH A 104 704 84 HOH HOH . E 5 HOH A 105 705 41 HOH HOH . E 5 HOH A 106 706 82 HOH HOH . E 5 HOH A 107 707 74 HOH HOH . E 5 HOH A 108 708 80 HOH HOH . E 5 HOH A 109 709 106 HOH HOH . E 5 HOH A 110 710 88 HOH HOH . E 5 HOH A 111 711 109 HOH HOH . E 5 HOH A 112 712 100 HOH HOH . E 5 HOH A 113 713 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 -37.04 1.402 -30.507 1 49.65 ? C TRS 501 A 1 HETATM 2 C C1 TRS . . . B 2 -38.327 0.716 -30.912 1 45.33 ? C1 TRS 501 A 1 HETATM 3 C C2 TRS . . . B 2 -36.425 2.069 -31.739 1 47.42 ? C2 TRS 501 A 1 HETATM 4 C C3 TRS . . . B 2 -37.386 2.454 -29.463 1 58.82 ? C3 TRS 501 A 1 HETATM 5 N N TRS . . . B 2 -36.144 0.381 -29.948 1 35.77 ? N TRS 501 A 1 HETATM 6 O O1 TRS . . . B 2 -38.826 1.398 -32.033 1 44.18 ? O1 TRS 501 A 1 HETATM 7 O O2 TRS . . . B 2 -35.659 3.191 -31.354 1 42.54 ? O2 TRS 501 A 1 HETATM 8 O O3 TRS . . . B 2 -38.272 3.386 -30.042 1 52.99 ? O3 TRS 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #