data_7D8X # _model_server_result.job_id wUWKBynlBYOZPg9vICy2DA _model_server_result.datetime_utc '2024-11-27 03:04:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":502}' # _entry.id 7D8X # _exptl.entry_id 7D8X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 419.491 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(1S)-1-(4-fluorophenyl)ethyl]-3-[[3-methoxy-4-(4-methylimidazol-1-yl)phenyl]methylidene]piperidin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D8X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 6 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 6 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 1699 NAG 5 n E NAG 2 E 2 NAG A 1700 NAG 6 n F NAG 1 F 1 NAG A 1701 NAG 6 n F NAG 2 F 2 NAG A 1702 NAG 6 n F BMA 3 F 3 BMA A 1716 BMA 6 n F BMA 4 F 4 BMA A 1718 BMA 6 n F BMA 5 F 5 BMA A 1717 BMA 5 n G NAG 1 G 1 NAG A 1703 NAG 5 n G NAG 2 G 2 NAG A 1704 NAG 5 n H NAG 1 H 1 NAG A 1706 NAG 5 n H NAG 2 H 2 NAG A 1707 NAG 5 n I NAG 1 I 1 NAG A 1708 NAG 5 n I NAG 2 I 2 NAG A 1709 NAG 5 n J NAG 1 J 1 NAG A 1710 NAG 5 n J NAG 2 J 2 NAG A 1711 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 140 A CYS 140 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 230 A CYS 230 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 A SG CYS 586 A CYS 586 1_555 A SG CYS 620 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 55 A ASN 55 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 187 A ASN 187 1_555 O C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 264 A ASN 264 1_555 N C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 A ND2 ASN 387 A ASN 387 1_555 K C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 435 A ASN 435 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale7 A ND2 ASN 464 A ASN 464 1_555 L C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 A ND2 ASN 506 A ASN 506 1_555 M C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 A ND2 ASN 530 A ASN 530 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 A ND2 ASN 562 A ASN 562 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 A ND2 ASN 573 A ASN 573 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale12 A ND2 ASN 580 A ASN 580 1_555 P C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale15 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale16 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale17 F O6 BMA . F BMA 3 1_555 F C1 BMA . F BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale18 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale19 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale20 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale21 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C25 H26 F N3 O2' _chem_comp.formula_weight 419.491 _chem_comp.id GZR _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(1S)-1-(4-fluorophenyl)ethyl]-3-[[3-methoxy-4-(4-methylimidazol-1-yl)phenyl]methylidene]piperidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms E-2012 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C29 GZR sing 333 n n C29 C27 GZR doub 334 n y C29 N06 GZR sing 335 n y C27 N05 GZR sing 336 n y C26 C20 GZR doub 337 n y C26 C23 GZR sing 338 n y N06 C28 GZR doub 339 n y N05 C28 GZR sing 340 n y N05 C23 GZR sing 341 n n F01 C25 GZR sing 342 n n C20 C16 GZR sing 343 n y C23 C24 GZR doub 344 n y C22 C25 GZR doub 345 n y C22 C18 GZR sing 346 n y C25 C21 GZR sing 347 n y C10 C08 GZR sing 348 n n C10 C11 GZR sing 349 n n C16 C15 GZR sing 350 n n C16 C19 GZR doub 351 n y C08 C07 GZR sing 352 n n C11 C15 GZR doub 353 e n C11 C12 GZR sing 354 n n C18 C13 GZR doub 355 n y C24 C19 GZR sing 356 n y C24 O03 GZR sing 357 n n C21 C17 GZR doub 358 n y O02 C12 GZR doub 359 n n C12 N04 GZR sing 360 n n O03 C30 GZR sing 361 n n C13 C17 GZR sing 362 n y C13 C09 GZR sing 363 n n C07 N04 GZR sing 364 n n N04 C09 GZR sing 365 n n C09 C14 GZR sing 366 n n C10 H1 GZR sing 367 n n C10 H2 GZR sing 368 n n C15 H3 GZR sing 369 n n C17 H5 GZR sing 370 n n C20 H6 GZR sing 371 n n C21 H7 GZR sing 372 n n C22 H8 GZR sing 373 n n C26 H9 GZR sing 374 n n C28 H10 GZR sing 375 n n C07 H11 GZR sing 376 n n C07 H12 GZR sing 377 n n C08 H13 GZR sing 378 n n C08 H14 GZR sing 379 n n C09 H15 GZR sing 380 n n C14 H17 GZR sing 381 n n C14 H18 GZR sing 382 n n C14 H19 GZR sing 383 n n C18 H20 GZR sing 384 n n C19 H21 GZR sing 385 n n C27 H22 GZR sing 386 n n C30 H23 GZR sing 387 n n C30 H24 GZR sing 388 n n C30 H25 GZR sing 389 n n C31 H26 GZR sing 390 n n C31 H27 GZR sing 391 n n C31 H28 GZR sing 392 n n # _atom_sites.entry_id 7D8X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 7 NAG A 1 801 1705 NAG NAG . L 7 NAG A 1 802 1712 NAG NAG . M 7 NAG A 1 803 1713 NAG NAG . N 7 NAG A 1 804 1714 NAG NAG . O 7 NAG A 1 805 1715 NAG NAG . P 7 NAG A 1 806 1719 NAG NAG . Q 8 PC1 B 1 501 501 PC1 PC1 . R 9 GZR B 1 502 701 GZR LIG . S 10 PTY B 1 503 801 PTY PTY . T 11 FTO B 1 504 601 FTO TSA . U 12 CLR C 1 301 301 CLR CLR . V 12 CLR C 1 302 401 CLR CLR . W 12 CLR C 1 303 501 CLR CLR . X 8 PC1 C 1 304 601 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 GZR . . . R 9 157.58 184.509 173.492 1 56.38 ? C10 GZR 502 B 1 HETATM 2 C C13 GZR . . . R 9 155.958 188.682 175.371 1 56.38 ? C13 GZR 502 B 1 HETATM 3 C C15 GZR . . . R 9 159.518 184.315 174.717 1 56.38 ? C15 GZR 502 B 1 HETATM 4 C C17 GZR . . . R 9 156.453 190.092 175.489 1 56.38 ? C17 GZR 502 B 1 HETATM 5 C C20 GZR . . . R 9 160.977 183.525 172.574 1 56.38 ? C20 GZR 502 B 1 HETATM 6 C C21 GZR . . . R 9 156.035 191.123 174.463 1 56.38 ? C21 GZR 502 B 1 HETATM 7 C C22 GZR . . . R 9 154.602 189.301 173.182 1 56.38 ? C22 GZR 502 B 1 HETATM 8 C C24 GZR . . . R 9 163.496 183.822 174.29 1 56.38 ? C24 GZR 502 B 1 HETATM 9 C C26 GZR . . . R 9 162.368 183.206 171.965 1 56.38 ? C26 GZR 502 B 1 HETATM 10 C C28 GZR . . . R 9 165.821 182.17 172.801 1 56.38 ? C28 GZR 502 B 1 HETATM 11 C C07 GZR . . . R 9 156.117 185.078 175.416 1 56.38 ? C07 GZR 502 B 1 HETATM 12 C C08 GZR . . . R 9 156.119 184.716 174.091 1 56.38 ? C08 GZR 502 B 1 HETATM 13 C C09 GZR . . . R 9 156.362 187.604 176.387 1 56.38 ? C09 GZR 502 B 1 HETATM 14 C C11 GZR . . . R 9 158.586 185.109 174.181 1 56.38 ? C11 GZR 502 B 1 HETATM 15 C C12 GZR . . . R 9 158.218 186.425 174.95 1 56.38 ? C12 GZR 502 B 1 HETATM 16 C C14 GZR . . . R 9 157.248 188.158 177.499 1 56.38 ? C14 GZR 502 B 1 HETATM 17 C C16 GZR . . . R 9 160.872 183.989 174.031 1 56.38 ? C16 GZR 502 B 1 HETATM 18 C C18 GZR . . . R 9 155.014 188.284 174.195 1 56.38 ? C18 GZR 502 B 1 HETATM 19 C C19 GZR . . . R 9 162.115 184.131 174.874 1 56.38 ? C19 GZR 502 B 1 HETATM 20 C C23 GZR . . . R 9 163.62 183.357 172.825 1 56.38 ? C23 GZR 502 B 1 HETATM 21 C C25 GZR . . . R 9 155.102 190.725 173.301 1 56.38 ? C25 GZR 502 B 1 HETATM 22 C C27 GZR . . . R 9 165.54 183.599 171.211 1 56.38 ? C27 GZR 502 B 1 HETATM 23 C C29 GZR . . . R 9 166.774 183.035 171.074 1 56.38 ? C29 GZR 502 B 1 HETATM 24 C C30 GZR . . . R 9 164.399 183.863 176.48 1 56.38 ? C30 GZR 502 B 1 HETATM 25 C C31 GZR . . . R 9 167.813 183.347 169.971 1 56.38 ? C31 GZR 502 B 1 HETATM 26 F F01 GZR . . . R 9 154.724 191.658 172.373 1 56.38 ? F01 GZR 502 B 1 HETATM 27 N N04 GZR . . . R 9 156.955 186.477 175.621 1 56.38 ? N04 GZR 502 B 1 HETATM 28 N N05 GZR . . . R 9 164.969 183.055 172.273 1 56.38 ? N05 GZR 502 B 1 HETATM 29 N N06 GZR . . . R 9 166.935 182.168 172.046 1 56.38 ? N06 GZR 502 B 1 HETATM 30 O O02 GZR . . . R 9 158.998 187.315 174.943 1 56.38 ? O02 GZR 502 B 1 HETATM 31 O O03 GZR . . . R 9 164.641 183.963 175.1 1 56.38 ? O03 GZR 502 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #