data_7D8X # _model_server_result.job_id WPCS81BasnO7hXzF3-7Sqg _model_server_result.datetime_utc '2024-10-24 04:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":503}' # _entry.id 7D8X # _exptl.entry_id 7D8X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D8X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 6 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 6 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 1699 NAG 5 n E NAG 2 E 2 NAG A 1700 NAG 6 n F NAG 1 F 1 NAG A 1701 NAG 6 n F NAG 2 F 2 NAG A 1702 NAG 6 n F BMA 3 F 3 BMA A 1716 BMA 6 n F BMA 4 F 4 BMA A 1718 BMA 6 n F BMA 5 F 5 BMA A 1717 BMA 5 n G NAG 1 G 1 NAG A 1703 NAG 5 n G NAG 2 G 2 NAG A 1704 NAG 5 n H NAG 1 H 1 NAG A 1706 NAG 5 n H NAG 2 H 2 NAG A 1707 NAG 5 n I NAG 1 I 1 NAG A 1708 NAG 5 n I NAG 2 I 2 NAG A 1709 NAG 5 n J NAG 1 J 1 NAG A 1710 NAG 5 n J NAG 2 J 2 NAG A 1711 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 140 A CYS 140 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 230 A CYS 230 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 A SG CYS 586 A CYS 586 1_555 A SG CYS 620 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 55 A ASN 55 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 187 A ASN 187 1_555 O C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 264 A ASN 264 1_555 N C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 A ND2 ASN 387 A ASN 387 1_555 K C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 435 A ASN 435 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale7 A ND2 ASN 464 A ASN 464 1_555 L C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 A ND2 ASN 506 A ASN 506 1_555 M C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 A ND2 ASN 530 A ASN 530 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 A ND2 ASN 562 A ASN 562 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 A ND2 ASN 573 A ASN 573 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale12 A ND2 ASN 580 A ASN 580 1_555 P C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale15 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale16 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale17 F O6 BMA . F BMA 3 1_555 F C1 BMA . F BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale18 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale19 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale20 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale21 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7D8X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 7 NAG A 1 801 1705 NAG NAG . L 7 NAG A 1 802 1712 NAG NAG . M 7 NAG A 1 803 1713 NAG NAG . N 7 NAG A 1 804 1714 NAG NAG . O 7 NAG A 1 805 1715 NAG NAG . P 7 NAG A 1 806 1719 NAG NAG . Q 8 PC1 B 1 501 501 PC1 PC1 . R 9 GZR B 1 502 701 GZR LIG . S 10 PTY B 1 503 801 PTY PTY . T 11 FTO B 1 504 601 FTO TSA . U 12 CLR C 1 301 301 CLR CLR . V 12 CLR C 1 302 401 CLR CLR . W 12 CLR C 1 303 501 CLR CLR . X 8 PC1 C 1 304 601 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . S 10 164.445 154.347 173.53 1 64.79 ? C1 PTY 503 B 1 HETATM 2 C C2 PTY . . . S 10 167.691 158.655 177.302 1 64.79 ? C2 PTY 503 B 1 HETATM 3 C C3 PTY . . . S 10 166.403 158.526 178.078 1 64.79 ? C3 PTY 503 B 1 HETATM 4 O O4 PTY . . . S 10 163.923 153.864 172.273 1 64.79 ? O4 PTY 503 B 1 HETATM 5 C C5 PTY . . . S 10 165.156 156.481 174.683 1 64.79 ? C5 PTY 503 B 1 HETATM 6 C C6 PTY . . . S 10 164.702 155.831 173.396 1 64.79 ? C6 PTY 503 B 1 HETATM 7 O O7 PTY . . . S 10 163.472 156.447 172.919 1 64.79 ? O7 PTY 503 B 1 HETATM 8 C C8 PTY . . . S 10 163.543 157.598 172.229 1 64.79 ? C8 PTY 503 B 1 HETATM 9 O O10 PTY . . . S 10 164.561 158.208 172.036 1 64.79 ? O10 PTY 503 B 1 HETATM 10 C C11 PTY . . . S 10 162.203 158.008 171.697 1 64.79 ? C11 PTY 503 B 1 HETATM 11 C C12 PTY . . . S 10 162.201 158.285 170.232 1 64.79 ? C12 PTY 503 B 1 HETATM 12 C C13 PTY . . . S 10 160.865 158.82 169.758 1 64.79 ? C13 PTY 503 B 1 HETATM 13 C C14 PTY . . . S 10 160.893 159.449 168.39 1 64.79 ? C14 PTY 503 B 1 HETATM 14 C C15 PTY . . . S 10 161.221 158.507 167.261 1 64.79 ? C15 PTY 503 B 1 HETATM 15 C C16 PTY . . . S 10 161.349 159.183 165.918 1 64.79 ? C16 PTY 503 B 1 HETATM 16 C C17 PTY . . . S 10 161.622 158.24 164.776 1 64.79 ? C17 PTY 503 B 1 HETATM 17 C C18 PTY . . . S 10 160.453 157.364 164.405 1 64.79 ? C18 PTY 503 B 1 HETATM 18 C C19 PTY . . . S 10 159.33 158.098 163.718 1 64.79 ? C19 PTY 503 B 1 HETATM 19 C C20 PTY . . . S 10 158.154 157.232 163.348 1 64.79 ? C20 PTY 503 B 1 HETATM 20 C C21 PTY . . . S 10 157.162 157.905 162.433 1 64.79 ? C21 PTY 503 B 1 HETATM 21 C C22 PTY . . . S 10 157.726 158.273 161.082 1 64.79 ? C22 PTY 503 B 1 HETATM 22 C C23 PTY . . . S 10 156.754 158.988 160.177 1 64.79 ? C23 PTY 503 B 1 HETATM 23 C C30 PTY . . . S 10 164.774 153.797 171.254 1 64.79 ? C30 PTY 503 B 1 HETATM 24 C C31 PTY . . . S 10 164.074 154.018 169.941 1 64.79 ? C31 PTY 503 B 1 HETATM 25 O O30 PTY . . . S 10 165.946 153.557 171.383 1 64.79 ? O30 PTY 503 B 1 HETATM 26 C C32 PTY . . . S 10 164.968 153.864 168.754 1 64.79 ? C32 PTY 503 B 1 HETATM 27 C C33 PTY . . . S 10 164.312 154.314 167.459 1 64.79 ? C33 PTY 503 B 1 HETATM 28 C C34 PTY . . . S 10 165.165 154.091 166.234 1 64.79 ? C34 PTY 503 B 1 HETATM 29 C C35 PTY . . . S 10 164.6 154.656 164.955 1 64.79 ? C35 PTY 503 B 1 HETATM 30 C C36 PTY . . . S 10 165.432 154.349 163.732 1 64.79 ? C36 PTY 503 B 1 HETATM 31 C C37 PTY . . . S 10 164.868 154.889 162.442 1 64.79 ? C37 PTY 503 B 1 HETATM 32 C C38 PTY . . . S 10 164.831 156.392 162.373 1 64.79 ? C38 PTY 503 B 1 HETATM 33 C C39 PTY . . . S 10 164.223 156.953 161.111 1 64.79 ? C39 PTY 503 B 1 HETATM 34 C C40 PTY . . . S 10 162.783 156.566 160.896 1 64.79 ? C40 PTY 503 B 1 HETATM 35 C C41 PTY . . . S 10 161.919 157.656 160.304 1 64.79 ? C41 PTY 503 B 1 HETATM 36 C C42 PTY . . . S 10 162.345 158.151 158.944 1 64.79 ? C42 PTY 503 B 1 HETATM 37 C C43 PTY . . . S 10 161.399 159.188 158.389 1 64.79 ? C43 PTY 503 B 1 HETATM 38 C C44 PTY . . . S 10 161.793 159.787 157.062 1 64.79 ? C44 PTY 503 B 1 HETATM 39 P P1 PTY . . . S 10 164.416 158.395 176.322 1 64.79 ? P1 PTY 503 B 1 HETATM 40 O O11 PTY . . . S 10 165.459 157.707 177.332 1 64.79 ? O11 PTY 503 B 1 HETATM 41 O O12 PTY . . . S 10 163.189 158.775 177.104 1 64.79 ? O12 PTY 503 B 1 HETATM 42 O O13 PTY . . . S 10 165.111 159.441 175.496 1 64.79 ? O13 PTY 503 B 1 HETATM 43 O O14 PTY . . . S 10 164.062 157.182 175.331 1 64.79 ? O14 PTY 503 B 1 HETATM 44 N N1 PTY . . . S 10 168.746 159.316 178.068 1 64.79 ? N1 PTY 503 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #