data_7D92 # _model_server_result.job_id rlOJD2UtV2sdpYrdxnhysA _model_server_result.datetime_utc '2024-11-05 08:25:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":101}' # _entry.id 7D92 # _exptl.entry_id 7D92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D92 _cell.length_a 84.234 _cell.length_b 84.234 _cell.length_c 646.262 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 R N N ? 6 T N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG B 421 NAG 4 n D NAG 2 C 2 NAG B 422 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 159 B CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C SER 368 A SER 368 1_555 A N BFD 369 A BFD 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C BFD 369 A BFD 369 1_555 A N LYS 370 A LYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B ND2 ASN 158 B ASN 158 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale4 B ND2 ASN 265 B ASN 265 1_555 S C1 NAG . B NAG 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? metalc ? metalc1 A OE2 GLU 327 A GLU 327 1_555 G MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 A OD2 BFD 369 A BFD 369 1_555 E MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc3 A O THR 371 A THR 371 1_555 E MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A OD1 ASP 710 A ASP 710 1_555 E MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc5 A OD2 ASP 710 A ASP 710 1_555 E MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc6 A OD2 ASP 740 A ASP 740 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 A OE2 GLU 779 A GLU 779 1_555 G MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc8 A OD1 ASP 804 A ASP 804 1_555 G MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc9 A OD2 ASP 804 A ASP 804 1_555 G MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc10 E MG MG . A MG 1101 1_555 U O HOH . A HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc11 E MG MG . A MG 1101 1_555 U O HOH . A HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc12 F MG MG . A MG 1102 1_555 U O HOH . A HOH 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc13 G MG MG . A MG 1103 1_555 U O HOH . A HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc14 G MG MG . A MG 1103 1_555 U O HOH . A HOH 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc15 G MG MG . A MG 1103 1_555 U O HOH . A HOH 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 88 n n C1 C10 CLR sing 89 n n C1 H11 CLR sing 90 n n C1 H12 CLR sing 91 n n C2 C3 CLR sing 92 n n C2 H21 CLR sing 93 n n C2 H22 CLR sing 94 n n C3 C4 CLR sing 95 n n C3 O1 CLR sing 96 n n C3 H3 CLR sing 97 n n C4 C5 CLR sing 98 n n C4 H41 CLR sing 99 n n C4 H42 CLR sing 100 n n C5 C6 CLR doub 101 n n C5 C10 CLR sing 102 n n C6 C7 CLR sing 103 n n C6 H6 CLR sing 104 n n C7 C8 CLR sing 105 n n C7 H71 CLR sing 106 n n C7 H72 CLR sing 107 n n C8 C9 CLR sing 108 n n C8 C14 CLR sing 109 n n C8 H8 CLR sing 110 n n C9 C10 CLR sing 111 n n C9 C11 CLR sing 112 n n C9 H9 CLR sing 113 n n C10 C19 CLR sing 114 n n C11 C12 CLR sing 115 n n C11 H111 CLR sing 116 n n C11 H112 CLR sing 117 n n C12 C13 CLR sing 118 n n C12 H121 CLR sing 119 n n C12 H122 CLR sing 120 n n C13 C14 CLR sing 121 n n C13 C17 CLR sing 122 n n C13 C18 CLR sing 123 n n C14 C15 CLR sing 124 n n C14 H14 CLR sing 125 n n C15 C16 CLR sing 126 n n C15 H151 CLR sing 127 n n C15 H152 CLR sing 128 n n C16 C17 CLR sing 129 n n C16 H161 CLR sing 130 n n C16 H162 CLR sing 131 n n C17 C20 CLR sing 132 n n C17 H17 CLR sing 133 n n C18 H181 CLR sing 134 n n C18 H182 CLR sing 135 n n C18 H183 CLR sing 136 n n C19 H191 CLR sing 137 n n C19 H192 CLR sing 138 n n C19 H193 CLR sing 139 n n C20 C21 CLR sing 140 n n C20 C22 CLR sing 141 n n C20 H20 CLR sing 142 n n C21 H211 CLR sing 143 n n C21 H212 CLR sing 144 n n C21 H213 CLR sing 145 n n C22 C23 CLR sing 146 n n C22 H221 CLR sing 147 n n C22 H222 CLR sing 148 n n C23 C24 CLR sing 149 n n C23 H231 CLR sing 150 n n C23 H232 CLR sing 151 n n C24 C25 CLR sing 152 n n C24 H241 CLR sing 153 n n C24 H242 CLR sing 154 n n C25 C26 CLR sing 155 n n C25 C27 CLR sing 156 n n C25 H25 CLR sing 157 n n C26 H261 CLR sing 158 n n C26 H262 CLR sing 159 n n C26 H263 CLR sing 160 n n C27 H271 CLR sing 161 n n C27 H272 CLR sing 162 n n C27 H273 CLR sing 163 n n O1 H1 CLR sing 164 n n # _atom_sites.entry_id 7D92 _atom_sites.fract_transf_matrix[1][1] 0.011872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG A 1 1101 1101 MG MG . F 5 MG A 1 1102 1102 MG MG . G 5 MG A 1 1103 1103 MG MG . H 6 CLR A 1 1104 1107 CLR CLR . I 7 PCW A 1 1105 1201 PCW PCW . J 7 PCW A 1 1106 1202 PCW PCW . K 7 PCW A 1 1107 1203 PCW PCW . L 7 PCW A 1 1108 1204 PCW PCW . M 7 PCW A 1 1109 1205 PCW PCW . N 7 PCW A 1 1110 1206 PCW PCW . O 7 PCW A 1 1111 1210 PCW PCW . P 7 PCW A 1 1112 1211 PCW PCW . Q 8 H0C A 1 1121 2201 H0C 9AO . R 6 CLR B 1 501 1105 CLR CLR . S 9 NAG B 1 421 431 NAG NAG . T 6 CLR G 1 101 1106 CLR CLR . U 10 HOH A 1 1201 2105 HOH HOH . U 10 HOH A 2 1202 2114 HOH HOH . U 10 HOH A 3 1203 2003 HOH HOH . U 10 HOH A 4 1204 2115 HOH HOH . U 10 HOH A 5 1205 2001 HOH HOH . U 10 HOH A 6 1206 2002 HOH HOH . U 10 HOH A 7 1207 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . T 6 53.26 58.306 -9.607 1 114.03 ? C1 CLR 101 G 1 HETATM 2 C C2 CLR . . . T 6 52.626 58.407 -11.018 1 113.96 ? C2 CLR 101 G 1 HETATM 3 C C3 CLR . . . T 6 51.197 58.99 -11.012 1 113.94 ? C3 CLR 101 G 1 HETATM 4 C C4 CLR . . . T 6 51.219 60.348 -10.274 1 113.87 ? C4 CLR 101 G 1 HETATM 5 C C5 CLR . . . T 6 51.875 60.313 -8.902 1 118.57 ? C5 CLR 101 G 1 HETATM 6 C C6 CLR . . . T 6 51.185 60.688 -7.818 1 122.86 ? C6 CLR 101 G 1 HETATM 7 C C7 CLR . . . T 6 51.742 60.489 -6.413 1 124.61 ? C7 CLR 101 G 1 HETATM 8 C C8 CLR . . . T 6 53.269 60.541 -6.451 1 124.97 ? C8 CLR 101 G 1 HETATM 9 C C9 CLR . . . T 6 53.805 59.441 -7.396 1 126.09 ? C9 CLR 101 G 1 HETATM 10 C C10 CLR . . . T 6 53.332 59.668 -8.896 1 114.06 ? C10 CLR 101 G 1 HETATM 11 C C11 CLR . . . T 6 55.349 59.243 -7.246 1 127.52 ? C11 CLR 101 G 1 HETATM 12 C C12 CLR . . . T 6 55.82 59.106 -5.758 1 128.58 ? C12 CLR 101 G 1 HETATM 13 C C13 CLR . . . T 6 55.327 60.352 -4.936 1 127.43 ? C13 CLR 101 G 1 HETATM 14 C C14 CLR . . . T 6 53.773 60.3 -5.026 1 126.76 ? C14 CLR 101 G 1 HETATM 15 C C15 CLR . . . T 6 53.243 61.27 -3.916 1 125.96 ? C15 CLR 101 G 1 HETATM 16 C C16 CLR . . . T 6 54.382 61.231 -2.802 1 126.79 ? C16 CLR 101 G 1 HETATM 17 C C17 CLR . . . T 6 55.507 60.248 -3.364 1 128.02 ? C17 CLR 101 G 1 HETATM 18 C C18 CLR . . . T 6 55.855 61.694 -5.449 1 129.7 ? C18 CLR 101 G 1 HETATM 19 C C19 CLR . . . T 6 54.347 60.604 -9.631 1 107.13 ? C19 CLR 101 G 1 HETATM 20 C C20 CLR . . . T 6 56.9 60.688 -2.825 1 128.25 ? C20 CLR 101 G 1 HETATM 21 C C21 CLR . . . T 6 58.003 59.602 -2.828 1 126.82 ? C21 CLR 101 G 1 HETATM 22 C C22 CLR . . . T 6 56.688 61.166 -1.332 1 122.63 ? C22 CLR 101 G 1 HETATM 23 C C23 CLR . . . T 6 57.892 62.012 -0.848 1 115.09 ? C23 CLR 101 G 1 HETATM 24 C C24 CLR . . . T 6 57.84 61.993 0.731 1 104.15 ? C24 CLR 101 G 1 HETATM 25 C C25 CLR . . . T 6 58.891 63.018 1.263 1 98.07 ? C25 CLR 101 G 1 HETATM 26 C C26 CLR . . . T 6 59.113 62.996 2.796 1 98.07 ? C26 CLR 101 G 1 HETATM 27 C C27 CLR . . . T 6 60.187 62.828 0.42 1 98.07 ? C27 CLR 101 G 1 HETATM 28 O O1 CLR . . . T 6 50.595 59.075 -12.299 1 111.77 ? O1 CLR 101 G 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #