data_7D9L # _model_server_result.job_id Kf5Z-ls1b11GyWDuNURVjw _model_server_result.datetime_utc '2024-12-01 15:14:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 7D9L # _exptl.entry_id 7D9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.322 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-GAMMA-GLUTAMYL-3-SULFINO-L-ALANYLGLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D9L _cell.length_a 46.095 _cell.length_b 106.758 _cell.length_c 42.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 8 A HIS 8 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc3 A NE2 HIS 139 A HIS 139 1_555 C ZN ZN . A ZN 302 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc4 A OE1 GLU 170 A GLU 170 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 A OE2 GLU 170 A GLU 170 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 F O2S GSF . A GSF 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 G O1 OXY . A OXY 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc8 B ZN ZN . A ZN 301 1_555 G O2 OXY . A OXY 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc9 B ZN ZN . A ZN 301 1_555 H O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? # _chem_comp.formula 'C10 H17 N3 O8 S' _chem_comp.formula_weight 339.322 _chem_comp.id GSF _chem_comp.mon_nstd_flag . _chem_comp.name L-GAMMA-GLUTAMYL-3-SULFINO-L-ALANYLGLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GLUTATHIONE SULFINATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CB1 CG1 GSF sing 129 n n CB1 CA1 GSF sing 130 n n CB1 HB11 GSF sing 131 n n CB1 HB12 GSF sing 132 n n CG1 CD1 GSF sing 133 n n CG1 HG11 GSF sing 134 n n CG1 HG12 GSF sing 135 n n CD1 OE1 GSF doub 136 n n CD1 N2 GSF sing 137 n n C1 O11 GSF sing 138 n n C1 O12 GSF doub 139 n n C1 CA1 GSF sing 140 n n O11 H11 GSF sing 141 n n N1 CA1 GSF sing 142 n n N1 HN11 GSF sing 143 n n N1 HN12 GSF sing 144 n n CA1 HA1 GSF sing 145 n n N2 CA2 GSF sing 146 n n N2 HN2 GSF sing 147 n n CA2 CB2 GSF sing 148 n n CA2 C2 GSF sing 149 n n CA2 HA2 GSF sing 150 n n CB2 SG2 GSF sing 151 n n CB2 HB21 GSF sing 152 n n CB2 HB22 GSF sing 153 n n SG2 O1S GSF doub 154 n n SG2 O2S GSF sing 155 n n O2S H2S GSF sing 156 n n C2 O2 GSF doub 157 n n C2 N3 GSF sing 158 n n N3 CA3 GSF sing 159 n n N3 HN3 GSF sing 160 n n CA3 C3 GSF sing 161 n n CA3 HA31 GSF sing 162 n n CA3 HA32 GSF sing 163 n n C3 O31 GSF sing 164 n n C3 O32 GSF doub 165 n n O31 H31 GSF sing 166 n n # _atom_sites.entry_id 7D9L _atom_sites.fract_transf_matrix[1][1] 0.021694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 216 ZN ZN . C 2 ZN A 1 302 217 ZN ZN . D 3 CL A 1 303 218 CL CL . E 4 SO4 A 1 304 219 SO4 SO4 . F 5 GSF A 1 305 220 GSF GSF . G 6 OXY A 1 306 221 OXY OXY . H 7 HOH A 1 401 144 HOH HOH . H 7 HOH A 2 402 75 HOH HOH . H 7 HOH A 3 403 137 HOH HOH . H 7 HOH A 4 404 41 HOH HOH . H 7 HOH A 5 405 102 HOH HOH . H 7 HOH A 6 406 71 HOH HOH . H 7 HOH A 7 407 65 HOH HOH . H 7 HOH A 8 408 86 HOH HOH . H 7 HOH A 9 409 142 HOH HOH . H 7 HOH A 10 410 51 HOH HOH . H 7 HOH A 11 411 42 HOH HOH . H 7 HOH A 12 412 61 HOH HOH . H 7 HOH A 13 413 3 HOH HOH . H 7 HOH A 14 414 66 HOH HOH . H 7 HOH A 15 415 63 HOH HOH . H 7 HOH A 16 416 96 HOH HOH . H 7 HOH A 17 417 60 HOH HOH . H 7 HOH A 18 418 105 HOH HOH . H 7 HOH A 19 419 52 HOH HOH . H 7 HOH A 20 420 6 HOH HOH . H 7 HOH A 21 421 100 HOH HOH . H 7 HOH A 22 422 17 HOH HOH . H 7 HOH A 23 423 24 HOH HOH . H 7 HOH A 24 424 120 HOH HOH . H 7 HOH A 25 425 2 HOH HOH . H 7 HOH A 26 426 25 HOH HOH . H 7 HOH A 27 427 5 HOH HOH . H 7 HOH A 28 428 107 HOH HOH . H 7 HOH A 29 429 18 HOH HOH . H 7 HOH A 30 430 77 HOH HOH . H 7 HOH A 31 431 121 HOH HOH . H 7 HOH A 32 432 73 HOH HOH . H 7 HOH A 33 433 128 HOH HOH . H 7 HOH A 34 434 74 HOH HOH . H 7 HOH A 35 435 8 HOH HOH . H 7 HOH A 36 436 92 HOH HOH . H 7 HOH A 37 437 67 HOH HOH . H 7 HOH A 38 438 40 HOH HOH . H 7 HOH A 39 439 11 HOH HOH . H 7 HOH A 40 440 43 HOH HOH . H 7 HOH A 41 441 108 HOH HOH . H 7 HOH A 42 442 20 HOH HOH . H 7 HOH A 43 443 38 HOH HOH . H 7 HOH A 44 444 81 HOH HOH . H 7 HOH A 45 445 46 HOH HOH . H 7 HOH A 46 446 35 HOH HOH . H 7 HOH A 47 447 22 HOH HOH . H 7 HOH A 48 448 9 HOH HOH . H 7 HOH A 49 449 95 HOH HOH . H 7 HOH A 50 450 48 HOH HOH . H 7 HOH A 51 451 129 HOH HOH . H 7 HOH A 52 452 135 HOH HOH . H 7 HOH A 53 453 26 HOH HOH . H 7 HOH A 54 454 101 HOH HOH . H 7 HOH A 55 455 56 HOH HOH . H 7 HOH A 56 456 99 HOH HOH . H 7 HOH A 57 457 16 HOH HOH . H 7 HOH A 58 458 14 HOH HOH . H 7 HOH A 59 459 85 HOH HOH . H 7 HOH A 60 460 89 HOH HOH . H 7 HOH A 61 461 45 HOH HOH . H 7 HOH A 62 462 87 HOH HOH . H 7 HOH A 63 463 113 HOH HOH . H 7 HOH A 64 464 31 HOH HOH . H 7 HOH A 65 465 50 HOH HOH . H 7 HOH A 66 466 98 HOH HOH . H 7 HOH A 67 467 115 HOH HOH . H 7 HOH A 68 468 80 HOH HOH . H 7 HOH A 69 469 30 HOH HOH . H 7 HOH A 70 470 136 HOH HOH . H 7 HOH A 71 471 138 HOH HOH . H 7 HOH A 72 472 132 HOH HOH . H 7 HOH A 73 473 29 HOH HOH . H 7 HOH A 74 474 127 HOH HOH . H 7 HOH A 75 475 7 HOH HOH . H 7 HOH A 76 476 1 HOH HOH . H 7 HOH A 77 477 47 HOH HOH . H 7 HOH A 78 478 23 HOH HOH . H 7 HOH A 79 479 134 HOH HOH . H 7 HOH A 80 480 69 HOH HOH . H 7 HOH A 81 481 27 HOH HOH . H 7 HOH A 82 482 72 HOH HOH . H 7 HOH A 83 483 79 HOH HOH . H 7 HOH A 84 484 39 HOH HOH . H 7 HOH A 85 485 70 HOH HOH . H 7 HOH A 86 486 59 HOH HOH . H 7 HOH A 87 487 53 HOH HOH . H 7 HOH A 88 488 90 HOH HOH . H 7 HOH A 89 489 97 HOH HOH . H 7 HOH A 90 490 76 HOH HOH . H 7 HOH A 91 491 133 HOH HOH . H 7 HOH A 92 492 125 HOH HOH . H 7 HOH A 93 493 36 HOH HOH . H 7 HOH A 94 494 34 HOH HOH . H 7 HOH A 95 495 32 HOH HOH . H 7 HOH A 96 496 33 HOH HOH . H 7 HOH A 97 497 68 HOH HOH . H 7 HOH A 98 498 111 HOH HOH . H 7 HOH A 99 499 149 HOH HOH . H 7 HOH A 100 500 151 HOH HOH . H 7 HOH A 101 501 55 HOH HOH . H 7 HOH A 102 502 104 HOH HOH . H 7 HOH A 103 503 19 HOH HOH . H 7 HOH A 104 504 13 HOH HOH . H 7 HOH A 105 505 93 HOH HOH . H 7 HOH A 106 506 82 HOH HOH . H 7 HOH A 107 507 57 HOH HOH . H 7 HOH A 108 508 44 HOH HOH . H 7 HOH A 109 509 153 HOH HOH . H 7 HOH A 110 510 84 HOH HOH . H 7 HOH A 111 511 94 HOH HOH . H 7 HOH A 112 512 49 HOH HOH . H 7 HOH A 113 513 143 HOH HOH . H 7 HOH A 114 514 54 HOH HOH . H 7 HOH A 115 515 110 HOH HOH . H 7 HOH A 116 516 4 HOH HOH . H 7 HOH A 117 517 148 HOH HOH . H 7 HOH A 118 518 122 HOH HOH . H 7 HOH A 119 519 64 HOH HOH . H 7 HOH A 120 520 131 HOH HOH . H 7 HOH A 121 521 152 HOH HOH . H 7 HOH A 122 522 155 HOH HOH . H 7 HOH A 123 523 146 HOH HOH . H 7 HOH A 124 524 145 HOH HOH . H 7 HOH A 125 525 88 HOH HOH . H 7 HOH A 126 526 150 HOH HOH . H 7 HOH A 127 527 156 HOH HOH . H 7 HOH A 128 528 78 HOH HOH . H 7 HOH A 129 529 147 HOH HOH . H 7 HOH A 130 530 106 HOH HOH . H 7 HOH A 131 531 141 HOH HOH . H 7 HOH A 132 532 154 HOH HOH . H 7 HOH A 133 533 15 HOH HOH . H 7 HOH A 134 534 140 HOH HOH . H 7 HOH A 135 535 124 HOH HOH . H 7 HOH A 136 536 114 HOH HOH . H 7 HOH A 137 537 91 HOH HOH . H 7 HOH A 138 538 83 HOH HOH . H 7 HOH A 139 539 130 HOH HOH . H 7 HOH A 140 540 58 HOH HOH . H 7 HOH A 141 541 21 HOH HOH . H 7 HOH A 142 542 117 HOH HOH . H 7 HOH A 143 543 118 HOH HOH . H 7 HOH A 144 544 109 HOH HOH . H 7 HOH A 145 545 12 HOH HOH . H 7 HOH A 146 546 126 HOH HOH . H 7 HOH A 147 547 119 HOH HOH . H 7 HOH A 148 548 116 HOH HOH . H 7 HOH A 149 549 112 HOH HOH . H 7 HOH A 150 550 62 HOH HOH . H 7 HOH A 151 551 28 HOH HOH . H 7 HOH A 152 552 10 HOH HOH . H 7 HOH A 153 553 103 HOH HOH . H 7 HOH A 154 554 123 HOH HOH . H 7 HOH A 155 555 139 HOH HOH . H 7 HOH A 156 556 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CB1 GSF . . . F 5 8.182 22.331 16.745 1 15.28 ? CB1 GSF 305 A 1 HETATM 2 C CG1 GSF . . . F 5 8.547 21.732 15.496 1 14.29 ? CG1 GSF 305 A 1 HETATM 3 C CD1 GSF . . . F 5 9.3 22.783 14.716 1 11.98 ? CD1 GSF 305 A 1 HETATM 4 O OE1 GSF . . . F 5 9.311 24.042 14.902 1 14.7 ? OE1 GSF 305 A 1 HETATM 5 C C1 GSF . . . F 5 7.454 20.286 17.865 1 10.86 ? C1 GSF 305 A 1 HETATM 6 O O11 GSF . . . F 5 7.98 20.189 19.011 1 13.3 ? O11 GSF 305 A 1 HETATM 7 O O12 GSF . . . F 5 7.381 19.284 17.127 1 10.24 ? O12 GSF 305 A 1 HETATM 8 N N1 GSF . . . F 5 6.576 22.527 18.512 1 11.64 ? N1 GSF 305 A 1 HETATM 9 C CA1 GSF . . . F 5 6.971 21.635 17.378 1 11.94 ? CA1 GSF 305 A 1 HETATM 10 N N2 GSF . . . F 5 9.887 22.296 13.658 1 10.39 ? N2 GSF 305 A 1 HETATM 11 C CA2 GSF . . . F 5 10.371 23.182 12.654 1 8.98 ? CA2 GSF 305 A 1 HETATM 12 C CB2 GSF . . . F 5 11.568 22.557 11.955 1 8.28 ? CB2 GSF 305 A 1 HETATM 13 S SG2 GSF . . . F 5 13.068 22.599 12.933 1 15.09 ? SG2 GSF 305 A 1 HETATM 14 O O1S GSF . . . F 5 13.222 23.997 13.298 1 19.93 ? O1S GSF 305 A 1 HETATM 15 O O2S GSF . . . F 5 14.201 22.28 11.905 1 15.82 ? O2S GSF 305 A 1 HETATM 16 C C2 GSF . . . F 5 9.332 23.498 11.621 1 14.84 ? C2 GSF 305 A 1 HETATM 17 O O2 GSF . . . F 5 8.403 22.761 11.5 1 16.08 ? O2 GSF 305 A 1 HETATM 18 N N3 GSF . . . F 5 9.523 24.549 10.817 1 15.22 ? N3 GSF 305 A 1 HETATM 19 C CA3 GSF . . . F 5 8.645 24.801 9.685 1 20.89 ? CA3 GSF 305 A 1 HETATM 20 C C3 GSF . . . F 5 8.291 26.235 9.448 1 31.59 ? C3 GSF 305 A 1 HETATM 21 O O31 GSF . . . F 5 8.195 26.906 10.49 1 31.88 ? O31 GSF 305 A 1 HETATM 22 O O32 GSF . . . F 5 8.084 26.695 8.278 1 27.11 ? O32 GSF 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #