data_7D9R
#
_model_server_result.job_id            nSpSxryi9giADtJUSEU_0Q 
_model_server_result.datetime_utc      '2024-10-19 03:56:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d9r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    7D9R 
#
_exptl.entry_id    7D9R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7D9R 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D9R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 486 A ASP 486 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc2 A OD1 ASP 486 A ASP 486 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc3 A OD2 ASP 486 A ASP 486 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc4 A O ILE 487 A ILE 487 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc5 A OD2 ASP 530 A ASP 530 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 C O5' G2P . A G2P 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc7 C O3B G2P . A G2P 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc8 C O2B G2P . A G2P 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 234 n n 
CHA C4D HEM doub 235 n n 
CHA HHA HEM sing 236 n n 
CHB C4A HEM sing 237 n n 
CHB C1B HEM doub 238 n n 
CHB HHB HEM sing 239 n n 
CHC C4B HEM sing 240 n n 
CHC C1C HEM doub 241 n n 
CHC HHC HEM sing 242 n n 
CHD C4C HEM doub 243 n n 
CHD C1D HEM sing 244 n n 
CHD HHD HEM sing 245 n n 
C1A C2A HEM doub 246 n y 
C1A NA HEM sing 247 n y 
C2A C3A HEM sing 248 n y 
C2A CAA HEM sing 249 n n 
C3A C4A HEM doub 250 n y 
C3A CMA HEM sing 251 n n 
C4A NA HEM sing 252 n y 
CMA HMA HEM sing 253 n n 
CMA HMAA HEM sing 254 n n 
CMA HMAB HEM sing 255 n n 
CAA CBA HEM sing 256 n n 
CAA HAA HEM sing 257 n n 
CAA HAAA HEM sing 258 n n 
CBA CGA HEM sing 259 n n 
CBA HBA HEM sing 260 n n 
CBA HBAA HEM sing 261 n n 
CGA O1A HEM doub 262 n n 
CGA O2A HEM sing 263 n n 
C1B C2B HEM sing 264 n n 
C1B NB HEM sing 265 n n 
C2B C3B HEM doub 266 n n 
C2B CMB HEM sing 267 n n 
C3B C4B HEM sing 268 n n 
C3B CAB HEM sing 269 n n 
C4B NB HEM doub 270 n n 
CMB HMB HEM sing 271 n n 
CMB HMBA HEM sing 272 n n 
CMB HMBB HEM sing 273 n n 
CAB CBB HEM doub 274 n n 
CAB HAB HEM sing 275 n n 
CBB HBB HEM sing 276 n n 
CBB HBBA HEM sing 277 n n 
C1C C2C HEM sing 278 n y 
C1C NC HEM sing 279 n y 
C2C C3C HEM doub 280 n y 
C2C CMC HEM sing 281 n n 
C3C C4C HEM sing 282 n y 
C3C CAC HEM sing 283 n n 
C4C NC HEM sing 284 n y 
CMC HMC HEM sing 285 n n 
CMC HMCA HEM sing 286 n n 
CMC HMCB HEM sing 287 n n 
CAC CBC HEM doub 288 n n 
CAC HAC HEM sing 289 n n 
CBC HBC HEM sing 290 n n 
CBC HBCA HEM sing 291 n n 
C1D C2D HEM sing 292 n n 
C1D ND HEM doub 293 n n 
C2D C3D HEM doub 294 n n 
C2D CMD HEM sing 295 n n 
C3D C4D HEM sing 296 n n 
C3D CAD HEM sing 297 n n 
C4D ND HEM sing 298 n n 
CMD HMD HEM sing 299 n n 
CMD HMDA HEM sing 300 n n 
CMD HMDB HEM sing 301 n n 
CAD CBD HEM sing 302 n n 
CAD HAD HEM sing 303 n n 
CAD HADA HEM sing 304 n n 
CBD CGD HEM sing 305 n n 
CBD HBD HEM sing 306 n n 
CBD HBDA HEM sing 307 n n 
CGD O1D HEM doub 308 n n 
CGD O2D HEM sing 309 n n 
O2A H2A HEM sing 310 n n 
O2D H2D HEM sing 311 n n 
FE NA HEM sing 312 n n 
FE NB HEM sing 313 n n 
FE NC HEM sing 314 n n 
FE ND HEM sing 315 n n 
#
_atom_sites.entry_id                     7D9R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 G2P A 1 1001 1001 G2P G2P . 
D 4 MG A 1 1002 1002 MG MG . 
E 4 MG A 1 1003 1201 MG MG . 
F 5 HEM B 1 701 1000 HEM HEM . 
G 6 GZO B 1 702 1101 GZO RIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 5 103.219 116.889 112.609 1 112.34 ? CHA HEM 701 B 1 
HETATM 2 C CHB HEM . . . F 5 103.16 116.737 117.442 1 112.34 ? CHB HEM 701 B 1 
HETATM 3 C CHC HEM . . . F 5 101.148 112.347 117.266 1 112.34 ? CHC HEM 701 B 1 
HETATM 4 C CHD HEM . . . F 5 100.457 112.917 112.505 1 112.34 ? CHD HEM 701 B 1 
HETATM 5 C C1A HEM . . . F 5 103.336 117.267 113.924 1 112.34 ? C1A HEM 701 B 1 
HETATM 6 C C2A HEM . . . F 5 103.751 118.56 114.429 1 112.34 ? C2A HEM 701 B 1 
HETATM 7 C C3A HEM . . . F 5 103.728 118.506 115.758 1 112.34 ? C3A HEM 701 B 1 
HETATM 8 C C4A HEM . . . F 5 103.306 117.183 116.151 1 112.34 ? C4A HEM 701 B 1 
HETATM 9 C CMA HEM . . . F 5 104.095 119.656 116.717 1 112.34 ? CMA HEM 701 B 1 
HETATM 10 C CAA HEM . . . F 5 104.145 119.802 113.604 1 112.34 ? CAA HEM 701 B 1 
HETATM 11 C CBA HEM . . . F 5 102.951 120.287 112.794 1 112.34 ? CBA HEM 701 B 1 
HETATM 12 C CGA HEM . . . F 5 103.073 121.769 112.58 1 112.34 ? CGA HEM 701 B 1 
HETATM 13 O O1A HEM . . . F 5 103.936 122.396 113.243 1 112.34 ? O1A HEM 701 B 1 
HETATM 14 O O2A HEM . . . F 5 102.304 122.324 111.755 1 112.34 ? O2A HEM 701 B 1 
HETATM 15 C C1B HEM . . . F 5 102.709 115.493 117.812 1 112.34 ? C1B HEM 701 B 1 
HETATM 16 C C2B HEM . . . F 5 102.82 114.909 119.128 1 112.34 ? C2B HEM 701 B 1 
HETATM 17 C C3B HEM . . . F 5 102.275 113.7 119.1 1 112.34 ? C3B HEM 701 B 1 
HETATM 18 C C4B HEM . . . F 5 101.786 113.465 117.751 1 112.34 ? C4B HEM 701 B 1 
HETATM 19 C CMB HEM . . . F 5 103.465 115.566 120.363 1 112.34 ? CMB HEM 701 B 1 
HETATM 20 C CAB HEM . . . F 5 102.215 112.778 120.337 1 112.34 ? CAB HEM 701 B 1 
HETATM 21 C CBB HEM . . . F 5 101.701 111.548 120.295 1 112.34 ? CBB HEM 701 B 1 
HETATM 22 C C1C HEM . . . F 5 100.72 112.155 115.972 1 112.34 ? C1C HEM 701 B 1 
HETATM 23 C C2C HEM . . . F 5 99.877 111.076 115.514 1 112.34 ? C2C HEM 701 B 1 
HETATM 24 C C3C HEM . . . F 5 99.674 111.216 114.209 1 112.34 ? C3C HEM 701 B 1 
HETATM 25 C C4C HEM . . . F 5 100.391 112.402 113.778 1 112.34 ? C4C HEM 701 B 1 
HETATM 26 C CMC HEM . . . F 5 99.301 109.948 116.388 1 112.34 ? CMC HEM 701 B 1 
HETATM 27 C CAC HEM . . . F 5 98.817 110.245 113.367 1 112.34 ? CAC HEM 701 B 1 
HETATM 28 C CBC HEM . . . F 5 98.571 110.434 112.068 1 112.34 ? CBC HEM 701 B 1 
HETATM 29 C C1D HEM . . . F 5 101.115 114.062 112.129 1 112.34 ? C1D HEM 701 B 1 
HETATM 30 C C2D HEM . . . F 5 101.075 114.662 110.817 1 112.34 ? C2D HEM 701 B 1 
HETATM 31 C C3D HEM . . . F 5 101.827 115.756 110.837 1 112.34 ? C3D HEM 701 B 1 
HETATM 32 C C4D HEM . . . F 5 102.384 115.892 112.165 1 112.34 ? C4D HEM 701 B 1 
HETATM 33 C CMD HEM . . . F 5 100.29 114.137 109.602 1 112.34 ? CMD HEM 701 B 1 
HETATM 34 C CAD HEM . . . F 5 102.054 116.69 109.634 1 112.34 ? CAD HEM 701 B 1 
HETATM 35 C CBD HEM . . . F 5 101.38 118.026 109.912 1 112.34 ? CBD HEM 701 B 1 
HETATM 36 C CGD HEM . . . F 5 100.768 118.539 108.639 1 112.34 ? CGD HEM 701 B 1 
HETATM 37 O O1D HEM . . . F 5 100.762 117.784 107.635 1 112.34 ? O1D HEM 701 B 1 
HETATM 38 O O2D HEM . . . F 5 100.282 119.698 108.634 1 112.34 ? O2D HEM 701 B 1 
HETATM 39 N NA HEM . . . F 5 103.074 116.45 115.006 1 112.34 ? NA HEM 701 B 1 
HETATM 40 N NB HEM . . . F 5 102.073 114.584 116.995 1 112.34 ? NB HEM 701 B 1 
HETATM 41 N NC HEM . . . F 5 101.016 112.947 114.883 1 112.34 ? NC HEM 701 B 1 
HETATM 42 N ND HEM . . . F 5 101.926 114.839 112.93 1 112.34 ? ND HEM 701 B 1 
HETATM 43 FE FE HEM . . . F 5 102.051 114.693 114.951 1 112.34 ? FE HEM 701 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           43 
#