data_7D9R # _model_server_result.job_id P0Ccq7joVZUfQKH-DfssTg _model_server_result.datetime_utc '2024-12-23 00:56:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":702}' # _entry.id 7D9R # _exptl.entry_id 7D9R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 422.416 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl ~{N}-[4,6-bis(azanyl)-2-[1-[(2-fluorophenyl)methyl]pyrazolo[3,4-b]pyridin-3-yl]pyrimidin-5-yl]-~{N}-methyl-carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D9R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 486 A ASP 486 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc2 A OD1 ASP 486 A ASP 486 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc3 A OD2 ASP 486 A ASP 486 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 A O ILE 487 A ILE 487 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc5 A OD2 ASP 530 A ASP 530 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc6 C O5' G2P . A G2P 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc7 C O3B G2P . A G2P 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 C O2B G2P . A G2P 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? # _chem_comp.formula 'C20 H19 F N8 O2' _chem_comp.formula_weight 422.416 _chem_comp.id GZO _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl ~{N}-[4,6-bis(azanyl)-2-[1-[(2-fluorophenyl)methyl]pyrazolo[3,4-b]pyridin-3-yl]pyrimidin-5-yl]-~{N}-methyl-carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 GZO doub 181 n y C27 C22 GZO sing 182 n y C28 C26 GZO sing 183 n y C22 C16 GZO doub 184 n y C20 C25 GZO sing 185 n y C20 C18 GZO doub 186 n y C25 N06 GZO doub 187 n y C26 C21 GZO doub 188 n y C18 C12 GZO sing 189 n y N06 C13 GZO sing 190 n y C29 N09 GZO sing 191 n n C16 C21 GZO sing 192 n y C16 C14 GZO sing 193 n n C12 C13 GZO doub 194 n y C12 C15 GZO sing 195 n y C13 N04 GZO sing 196 n y C21 F01 GZO sing 197 n n N10 C23 GZO sing 198 n n N07 C23 GZO doub 199 n y N07 C17 GZO sing 200 n y C23 C19 GZO sing 201 n y C15 C17 GZO sing 202 n n C15 N05 GZO doub 203 n y N04 C14 GZO sing 204 n n N04 N05 GZO sing 205 n y C17 N08 GZO doub 206 n y C19 N09 GZO sing 207 n n C19 C24 GZO doub 208 n y N09 C30 GZO sing 209 n n N08 C24 GZO sing 210 n y C24 N11 GZO sing 211 n n O03 C30 GZO doub 212 n n C30 O02 GZO sing 213 n n O02 C31 GZO sing 214 n n C14 H1 GZO sing 215 n n C14 H2 GZO sing 216 n n C18 H3 GZO sing 217 n n C20 H4 GZO sing 218 n n C22 H5 GZO sing 219 n n C25 H6 GZO sing 220 n n C26 H7 GZO sing 221 n n C27 H8 GZO sing 222 n n C28 H9 GZO sing 223 n n C29 H10 GZO sing 224 n n C29 H11 GZO sing 225 n n C29 H12 GZO sing 226 n n C31 H13 GZO sing 227 n n C31 H14 GZO sing 228 n n C31 H15 GZO sing 229 n n N10 H16 GZO sing 230 n n N10 H17 GZO sing 231 n n N11 H18 GZO sing 232 n n N11 H19 GZO sing 233 n n # _atom_sites.entry_id 7D9R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 G2P A 1 1001 1001 G2P G2P . D 4 MG A 1 1002 1002 MG MG . E 4 MG A 1 1003 1201 MG MG . F 5 HEM B 1 701 1000 HEM HEM . G 6 GZO B 1 702 1101 GZO RIO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 GZO . . . G 6 109.18 115.093 122.692 1 114.47 ? C12 GZO 702 B 1 HETATM 2 C C13 GZO . . . G 6 107.868 115.521 122.716 1 114.47 ? C13 GZO 702 B 1 HETATM 3 C C14 GZO . . . G 6 106.652 117.557 123.455 1 114.47 ? C14 GZO 702 B 1 HETATM 4 C C15 GZO . . . G 6 109.967 116.1 123.233 1 114.47 ? C15 GZO 702 B 1 HETATM 5 C C16 GZO . . . G 6 106.485 118.413 122.206 1 114.47 ? C16 GZO 702 B 1 HETATM 6 C C17 GZO . . . G 6 111.482 116.077 123.41 1 114.47 ? C17 GZO 702 B 1 HETATM 7 C C18 GZO . . . G 6 109.524 113.702 122.123 1 114.47 ? C18 GZO 702 B 1 HETATM 8 C C19 GZO . . . G 6 114.4 116.079 123.763 1 114.47 ? C19 GZO 702 B 1 HETATM 9 C C20 GZO . . . G 6 108.457 112.835 121.607 1 114.47 ? C20 GZO 702 B 1 HETATM 10 C C21 GZO . . . G 6 106.568 119.927 122.309 1 114.47 ? C21 GZO 702 B 1 HETATM 11 C C22 GZO . . . G 6 106.251 117.754 120.855 1 114.47 ? C22 GZO 702 B 1 HETATM 12 C C23 GZO . . . G 6 113.665 114.793 123.578 1 114.47 ? C23 GZO 702 B 1 HETATM 13 C C24 GZO . . . G 6 113.644 117.367 123.771 1 114.47 ? C24 GZO 702 B 1 HETATM 14 C C25 GZO . . . G 6 107.055 113.304 121.637 1 114.47 ? C25 GZO 702 B 1 HETATM 15 C C26 GZO . . . G 6 106.409 120.788 121.066 1 114.47 ? C26 GZO 702 B 1 HETATM 16 C C27 GZO . . . G 6 106.091 118.613 119.607 1 114.47 ? C27 GZO 702 B 1 HETATM 17 C C28 GZO . . . G 6 106.171 120.129 119.714 1 114.47 ? C28 GZO 702 B 1 HETATM 18 C C29 GZO . . . G 6 116.703 116.653 122.933 1 114.47 ? C29 GZO 702 B 1 HETATM 19 C C30 GZO . . . G 6 116.409 115.433 125.104 1 114.47 ? C30 GZO 702 B 1 HETATM 20 C C31 GZO . . . G 6 116.336 115.06 127.408 1 114.47 ? C31 GZO 702 B 1 HETATM 21 F F01 GZO . . . G 6 106.78 120.507 123.523 1 114.47 ? F01 GZO 702 B 1 HETATM 22 N N04 GZO . . . G 6 107.84 116.754 123.259 1 114.47 ? N04 GZO 702 B 1 HETATM 23 N N05 GZO . . . G 6 109.156 117.119 123.581 1 114.47 ? N05 GZO 702 B 1 HETATM 24 N N06 GZO . . . G 6 106.742 114.624 122.18 1 114.47 ? N06 GZO 702 B 1 HETATM 25 N N07 GZO . . . G 6 112.226 114.8 123.405 1 114.47 ? N07 GZO 702 B 1 HETATM 26 N N08 GZO . . . G 6 112.206 117.35 123.599 1 114.47 ? N08 GZO 702 B 1 HETATM 27 N N09 GZO . . . G 6 115.837 116.06 123.934 1 114.47 ? N09 GZO 702 B 1 HETATM 28 N N10 GZO . . . G 6 114.398 113.542 123.572 1 114.47 ? N10 GZO 702 B 1 HETATM 29 N N11 GZO . . . G 6 114.333 118.63 123.95 1 114.47 ? N11 GZO 702 B 1 HETATM 30 O O02 GZO . . . G 6 116.197 115.982 126.37 1 114.47 ? O02 GZO 702 B 1 HETATM 31 O O03 GZO . . . G 6 117.054 114.449 124.986 1 114.47 ? O03 GZO 702 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #