data_7D9S # _model_server_result.job_id dRZw7sHRKiyNYbIeKy7Ntw _model_server_result.datetime_utc '2024-12-23 00:34:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7d9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 7D9S # _exptl.entry_id 7D9S _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 304.343 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[5-[1-(phenylmethyl)indazol-3-yl]furan-2-yl]methanol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7D9S _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7D9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 486 A ASP 486 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 A OD1 ASP 486 A ASP 486 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc3 A OD2 ASP 486 A ASP 486 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 A O ILE 487 A ILE 487 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 A OD2 ASP 530 A ASP 530 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc6 C MG MG . A MG 701 1_555 G O5' G2P . B G2P 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc7 C MG MG . A MG 701 1_555 G O3B G2P . B G2P 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc8 D MG MG . A MG 702 1_555 G O1G G2P . B G2P 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc9 D MG MG . A MG 702 1_555 G O3B G2P . B G2P 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 D MG MG . A MG 702 1_555 G O2B G2P . B G2P 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C19 H16 N2 O2' _chem_comp.formula_weight 304.343 _chem_comp.id YC1 _chem_comp.mon_nstd_flag . _chem_comp.name '[5-[1-(phenylmethyl)indazol-3-yl]furan-2-yl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C23 YC1 doub 508 n y C21 C18 YC1 sing 509 n y C23 C20 YC1 sing 510 n y C18 C11 YC1 doub 511 n y C20 C17 YC1 doub 512 n y C13 C14 YC1 doub 513 n y C13 C10 YC1 sing 514 n y C14 C12 YC1 sing 515 n y C10 C05 YC1 doub 516 n y C11 C17 YC1 sing 517 n y C11 C08 YC1 sing 518 n n C12 C06 YC1 doub 519 n y C05 C06 YC1 sing 520 n y C05 N03 YC1 sing 521 n y C06 C07 YC1 sing 522 n y N03 C08 YC1 sing 523 n n N03 N04 YC1 sing 524 n y O01 C16 YC1 sing 525 n y O01 C09 YC1 sing 526 n y C22 C16 YC1 sing 527 n n C22 O02 YC1 sing 528 n n C07 C09 YC1 sing 529 n n C07 N04 YC1 doub 530 n y C16 C19 YC1 doub 531 n y C09 C15 YC1 doub 532 n y C19 C15 YC1 sing 533 n y C08 H1 YC1 sing 534 n n C08 H2 YC1 sing 535 n n C10 H3 YC1 sing 536 n n C12 H4 YC1 sing 537 n n C13 H5 YC1 sing 538 n n C14 H6 YC1 sing 539 n n C15 H7 YC1 sing 540 n n C17 H8 YC1 sing 541 n n C18 H9 YC1 sing 542 n n C19 H10 YC1 sing 543 n n C20 H11 YC1 sing 544 n n C21 H12 YC1 sing 545 n n C22 H13 YC1 sing 546 n n C22 H14 YC1 sing 547 n n C23 H15 YC1 sing 548 n n O02 H16 YC1 sing 549 n n # _atom_sites.entry_id 7D9S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 701 1002 MG MG . D 3 MG A 1 702 1101 MG MG . E 4 YC1 B 1 701 1002 YC1 YC1 . F 5 HEM B 1 702 1000 HEM HEM . G 6 G2P B 1 703 1001 G2P G2P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C05 YC1 . . . E 4 108.53 114.826 123.31 1 99.24 ? C05 YC1 701 B 1 HETATM 2 C C06 YC1 . . . E 4 109.876 114.521 123.343 1 99.24 ? C06 YC1 701 B 1 HETATM 3 C C07 YC1 . . . E 4 110.533 115.56 123.979 1 99.24 ? C07 YC1 701 B 1 HETATM 4 C C08 YC1 . . . E 4 107.099 116.702 124.078 1 99.24 ? C08 YC1 701 B 1 HETATM 5 C C09 YC1 . . . E 4 112.031 115.656 124.241 1 99.24 ? C09 YC1 701 B 1 HETATM 6 C C10 YC1 . . . E 4 107.501 113.837 122.647 1 99.24 ? C10 YC1 701 B 1 HETATM 7 C C11 YC1 . . . E 4 106.912 117.614 122.873 1 99.24 ? C11 YC1 701 B 1 HETATM 8 C C12 YC1 . . . E 4 110.393 113.175 122.715 1 99.24 ? C12 YC1 701 B 1 HETATM 9 C C13 YC1 . . . E 4 107.98 112.548 122.044 1 99.24 ? C13 YC1 701 B 1 HETATM 10 C C14 YC1 . . . E 4 109.424 112.218 122.078 1 99.24 ? C14 YC1 701 B 1 HETATM 11 C C15 YC1 . . . E 4 112.882 114.615 124.522 1 99.24 ? C15 YC1 701 B 1 HETATM 12 C C16 YC1 . . . E 4 114.056 116.488 124.506 1 99.24 ? C16 YC1 701 B 1 HETATM 13 C C17 YC1 . . . E 4 106.8 119.119 123.067 1 99.24 ? C17 YC1 701 B 1 HETATM 14 C C18 YC1 . . . E 4 106.852 117.014 121.475 1 99.24 ? C18 YC1 701 B 1 HETATM 15 C C19 YC1 . . . E 4 114.129 115.127 124.686 1 99.24 ? C19 YC1 701 B 1 HETATM 16 C C20 YC1 . . . E 4 106.617 120.026 121.858 1 99.24 ? C20 YC1 701 B 1 HETATM 17 C C21 YC1 . . . E 4 106.671 117.921 120.266 1 99.24 ? C21 YC1 701 B 1 HETATM 18 C C22 YC1 . . . E 4 115.214 117.477 124.591 1 99.24 ? C22 YC1 701 B 1 HETATM 19 C C23 YC1 . . . E 4 106.556 119.425 120.461 1 99.24 ? C23 YC1 701 B 1 HETATM 20 N N03 YC1 . . . E 4 108.36 116.017 123.909 1 99.24 ? N03 YC1 701 B 1 HETATM 21 N N04 YC1 . . . E 4 109.616 116.48 124.329 1 99.24 ? N04 YC1 701 B 1 HETATM 22 O O01 YC1 . . . E 4 112.761 116.804 124.232 1 99.24 ? O01 YC1 701 B 1 HETATM 23 O O02 YC1 . . . E 4 114.885 118.498 125.49 1 99.24 ? O02 YC1 701 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 23 #