data_7D9U
#
_model_server_result.job_id            1lgFbia5s3_B5f5JjCr6dQ 
_model_server_result.datetime_utc      '2024-10-18 01:23:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7d9u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    7D9U 
#
_exptl.entry_id    7D9U 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              565.699 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-({(4-carboxybutyl)[2-(2-{[4-(2-phenylethyl)benzyl]oxy}phenyl)ethyl]amino}methyl)benzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7D9U 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7D9U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 486 A ASP 486 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc2 A OD2 ASP 486 A ASP 486 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc3 A OD1 ASP 486 A ASP 486 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 A OD2 ASP 486 A ASP 486 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc5 A O ILE 487 A ILE 487 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc6 C O1G G2P . A G2P 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc7 C O2B G2P . A G2P 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc8 C O2B G2P . A G2P 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc9 C O1A G2P . A G2P 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? 
metalc ? metalc10 C O5' G2P . A G2P 1001 1_555 E MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
#
_chem_comp.formula           'C36 H39 N O5' 
_chem_comp.formula_weight    565.699 
_chem_comp.id                Z90 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-({(4-carboxybutyl)[2-(2-{[4-(2-phenylethyl)benzyl]oxy}phenyl)ethyl]amino}methyl)benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '4-((4-carboxybutyl)(2-((4-phenethylbenzol)oxy) phenethyl) amino)methyl(benzoic) acid)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBG OAA Z90 sing 426 n n 
OAA HOAA Z90 sing 427 n n 
CBH OAB Z90 doub 428 n n 
OAC CBG Z90 doub 429 n n 
CBH OAD Z90 sing 430 n n 
OAD HOAD Z90 sing 431 n n 
CAF CAE Z90 doub 432 n y 
CAE CAG Z90 sing 433 n y 
CAE HAE Z90 sing 434 n n 
CAJ CAF Z90 sing 435 n y 
CAF HAF Z90 sing 436 n n 
CAK CAG Z90 doub 437 n y 
CAG HAG Z90 sing 438 n n 
CAI CAH Z90 doub 439 n y 
CAH CAL Z90 sing 440 n y 
CAH HAH Z90 sing 441 n n 
CAI CAM Z90 sing 442 n y 
CAI HAI Z90 sing 443 n n 
CAJ CBI Z90 doub 444 n y 
CAJ HAJ Z90 sing 445 n n 
CBI CAK Z90 sing 446 n y 
CAK HAK Z90 sing 447 n n 
CAL CBN Z90 doub 448 n y 
CAL HAL Z90 sing 449 n n 
CAM CBO Z90 doub 450 n y 
CAM HAM Z90 sing 451 n n 
CAP CAN Z90 doub 452 n y 
CAN CBJ Z90 sing 453 n y 
CAN HAN Z90 sing 454 n n 
CAQ CAO Z90 sing 455 n y 
CBJ CAO Z90 doub 456 n y 
CAO HAO Z90 sing 457 n n 
CAP CBK Z90 sing 458 n y 
CAP HAP Z90 sing 459 n n 
CBK CAQ Z90 doub 460 n y 
CAQ HAQ Z90 sing 461 n n 
CBL CAR Z90 doub 462 n y 
CAR CAT Z90 sing 463 n y 
CAR HAR Z90 sing 464 n n 
CBL CAS Z90 sing 465 n y 
CAS CAU Z90 doub 466 n y 
CAS HAS Z90 sing 467 n n 
CAT CBM Z90 doub 468 n y 
CAT HAT Z90 sing 469 n n 
CAU CBM Z90 sing 470 n y 
CAU HAU Z90 sing 471 n n 
CAW CAV Z90 sing 472 n n 
CAX CAV Z90 sing 473 n n 
CAV HAV Z90 sing 474 n n 
CAV HAVA Z90 sing 475 n n 
CAW CBB Z90 sing 476 n n 
CAW HAW Z90 sing 477 n n 
CAW HAWA Z90 sing 478 n n 
CAX CBG Z90 sing 479 n n 
CAX HAX Z90 sing 480 n n 
CAX HAXA Z90 sing 481 n n 
CAZ CAY Z90 sing 482 n n 
CAY CBI Z90 sing 483 n n 
CAY HAY Z90 sing 484 n n 
CAY HAYA Z90 sing 485 n n 
CBJ CAZ Z90 sing 486 n n 
CAZ HAZ Z90 sing 487 n n 
CAZ HAZA Z90 sing 488 n n 
CBN CBA Z90 sing 489 n n 
CBA CBC Z90 sing 490 n n 
CBA HBA Z90 sing 491 n n 
CBA HBAA Z90 sing 492 n n 
NBP CBB Z90 sing 493 n n 
CBB HBB Z90 sing 494 n n 
CBB HBBA Z90 sing 495 n n 
CBC NBP Z90 sing 496 n n 
CBC HBC Z90 sing 497 n n 
CBC HBCA Z90 sing 498 n n 
OBF CBD Z90 sing 499 n n 
CBD CBK Z90 sing 500 n n 
CBD HBD Z90 sing 501 n n 
CBD HBDA Z90 sing 502 n n 
NBP CBE Z90 sing 503 n n 
CBE CBL Z90 sing 504 n n 
CBE HBE Z90 sing 505 n n 
CBE HBEA Z90 sing 506 n n 
CBO OBF Z90 sing 507 n n 
CBM CBH Z90 sing 508 n n 
CBO CBN Z90 sing 509 n y 
#
_atom_sites.entry_id                     7D9U 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 G2P A 1 1001 1001 G2P G2P . 
D 4 MG A 1 1002 1003 MG MG . 
E 4 MG A 1 1003 1005 MG MG . 
F 5 Z90 B 1 701 190 Z90 Z90 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA Z90 . . . F 5 107.018 148.201 129.749 1 96.99 ? OAA Z90 701 B 1 
HETATM 2 O OAB Z90 . . . F 5 108.155 144.032 127.466 1 96.99 ? OAB Z90 701 B 1 
HETATM 3 O OAC Z90 . . . F 5 107.193 150.316 130.317 1 96.99 ? OAC Z90 701 B 1 
HETATM 4 O OAD Z90 . . . F 5 109.706 143.247 126.143 1 96.99 ? OAD Z90 701 B 1 
HETATM 5 C CAE Z90 . . . F 5 115.484 141.384 124.045 1 96.99 ? CAE Z90 701 B 1 
HETATM 6 C CAF Z90 . . . F 5 116.624 141.379 123.253 1 96.99 ? CAF Z90 701 B 1 
HETATM 7 C CAG Z90 . . . F 5 115.09 142.547 124.696 1 96.99 ? CAG Z90 701 B 1 
HETATM 8 C CAH Z90 . . . F 5 112.932 153.788 128.558 1 96.99 ? CAH Z90 701 B 1 
HETATM 9 C CAI Z90 . . . F 5 114.26 153.868 128.151 1 96.99 ? CAI Z90 701 B 1 
HETATM 10 C CAJ Z90 . . . F 5 117.372 142.54 123.113 1 96.99 ? CAJ Z90 701 B 1 
HETATM 11 C CAK Z90 . . . F 5 115.839 143.708 124.557 1 96.99 ? CAK Z90 701 B 1 
HETATM 12 C CAL Z90 . . . F 5 112.129 152.714 128.194 1 96.99 ? CAL Z90 701 B 1 
HETATM 13 C CAM Z90 . . . F 5 114.83 152.874 127.366 1 96.99 ? CAM Z90 701 B 1 
HETATM 14 C CAN Z90 . . . F 5 117.535 148.317 123.562 1 96.99 ? CAN Z90 701 B 1 
HETATM 15 C CAO Z90 . . . F 5 115.727 147.138 124.625 1 96.99 ? CAO Z90 701 B 1 
HETATM 16 C CAP Z90 . . . F 5 117.295 149.416 124.374 1 96.99 ? CAP Z90 701 B 1 
HETATM 17 C CAQ Z90 . . . F 5 115.488 148.235 125.438 1 96.99 ? CAQ Z90 701 B 1 
HETATM 18 C CAR Z90 . . . F 5 111.018 146.516 129.277 1 96.99 ? CAR Z90 701 B 1 
HETATM 19 C CAS Z90 . . . F 5 112.139 146.575 127.155 1 96.99 ? CAS Z90 701 B 1 
HETATM 20 C CAT Z90 . . . F 5 110.142 145.557 128.794 1 96.99 ? CAT Z90 701 B 1 
HETATM 21 C CAU Z90 . . . F 5 111.264 145.609 126.673 1 96.99 ? CAU Z90 701 B 1 
HETATM 22 C CAV Z90 . . . F 5 109.599 150.175 131.4 1 96.99 ? CAV Z90 701 B 1 
HETATM 23 C CAW Z90 . . . F 5 110.795 150.654 130.587 1 96.99 ? CAW Z90 701 B 1 
HETATM 24 C CAX Z90 . . . F 5 109.021 148.892 130.819 1 96.99 ? CAX Z90 701 B 1 
HETATM 25 C CAY Z90 . . . F 5 117.797 144.962 123.612 1 96.99 ? CAY Z90 701 B 1 
HETATM 26 C CAZ Z90 . . . F 5 117.008 145.985 122.81 1 96.99 ? CAZ Z90 701 B 1 
HETATM 27 C CBA Z90 . . . F 5 111.815 150.512 126.989 1 96.99 ? CBA Z90 701 B 1 
HETATM 28 C CBB Z90 . . . F 5 111.857 149.566 130.493 1 96.99 ? CBB Z90 701 B 1 
HETATM 29 C CBC Z90 . . . F 5 111.318 149.673 128.159 1 96.99 ? CBC Z90 701 B 1 
HETATM 30 C CBD Z90 . . . F 5 116.001 150.562 126.197 1 96.99 ? CBD Z90 701 B 1 
HETATM 31 C CBE Z90 . . . F 5 112.961 148.086 129.018 1 96.99 ? CBE Z90 701 B 1 
HETATM 32 O OBF Z90 . . . F 5 114.598 150.792 126.207 1 96.99 ? OBF Z90 701 B 1 
HETATM 33 C CBG Z90 . . . F 5 107.648 149.155 130.255 1 96.99 ? CBG Z90 701 B 1 
HETATM 34 C CBH Z90 . . . F 5 109.314 144.061 127.001 1 96.99 ? CBH Z90 701 B 1 
HETATM 35 C CBI Z90 . . . F 5 116.978 143.704 123.762 1 96.99 ? CBI Z90 701 B 1 
HETATM 36 C CBJ Z90 . . . F 5 116.75 147.181 123.69 1 96.99 ? CBJ Z90 701 B 1 
HETATM 37 C CBK Z90 . . . F 5 116.27 149.374 125.308 1 96.99 ? CBK Z90 701 B 1 
HETATM 38 C CBL Z90 . . . F 5 112.012 147.042 128.461 1 96.99 ? CBL Z90 701 B 1 
HETATM 39 C CBM Z90 . . . F 5 110.263 145.107 127.493 1 96.99 ? CBM Z90 701 B 1 
HETATM 40 C CBN Z90 . . . F 5 112.654 151.695 127.416 1 96.99 ? CBN Z90 701 B 1 
HETATM 41 C CBO Z90 . . . F 5 114.066 151.783 126.983 1 96.99 ? CBO Z90 701 B 1 
HETATM 42 N NBP Z90 . . . F 5 112.393 149.443 129.128 1 96.99 ? NBP Z90 701 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           42 
#