data_7DAK # _model_server_result.job_id UwqY-OvvMO5NXRypAi2dHg _model_server_result.datetime_utc '2024-12-01 12:18:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7DAK # _exptl.entry_id 7DAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DAK _cell.length_a 66.382 _cell.length_b 66.815 _cell.length_c 83.497 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 7DAK _atom_sites.fract_transf_matrix[1][1] 0.015064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACO A 1 301 301 ACO ACO . D 3 F5U B 1 401 401 F5U F5U . E 2 ACO B 1 402 301 ACO ACO . F 3 F5U B 1 403 401 F5U F5U . G 4 HOH A 1 401 1 HOH HOH . H 4 HOH B 1 501 2 HOH HOH . H 4 HOH B 2 502 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . C 2 12.922 1.868 -27.346 1 66 ? N1A ACO 301 A 1 HETATM 2 C C2A ACO . . . C 2 12.218 2.971 -27.206 1 67.69 ? C2A ACO 301 A 1 HETATM 3 N N3A ACO . . . C 2 11.093 3.22 -27.83 1 53.26 ? N3A ACO 301 A 1 HETATM 4 C C4A ACO . . . C 2 10.618 2.36 -28.668 1 53.95 ? C4A ACO 301 A 1 HETATM 5 C C5A ACO . . . C 2 11.317 1.138 -28.912 1 56.93 ? C5A ACO 301 A 1 HETATM 6 C C6A ACO . . . C 2 12.54 0.921 -28.175 1 61.23 ? C6A ACO 301 A 1 HETATM 7 N N6A ACO . . . C 2 13.247 -0.199 -28.33 1 60.56 ? N6A ACO 301 A 1 HETATM 8 N N7A ACO . . . C 2 10.625 0.467 -29.801 1 50.28 ? N7A ACO 301 A 1 HETATM 9 C C8A ACO . . . C 2 9.569 1.224 -30.092 1 55.51 ? C8A ACO 301 A 1 HETATM 10 N N9A ACO . . . C 2 9.576 2.35 -29.408 1 54.49 ? N9A ACO 301 A 1 HETATM 11 C C1B ACO . . . C 2 8.594 3.425 -29.441 1 58.82 ? C1B ACO 301 A 1 HETATM 12 C C2B ACO . . . C 2 8.058 3.588 -30.799 1 54.61 ? C2B ACO 301 A 1 HETATM 13 O O2B ACO . . . C 2 8.851 4.561 -31.401 1 62.37 ? O2B ACO 301 A 1 HETATM 14 C C3B ACO . . . C 2 6.699 4.117 -30.508 1 55.67 ? C3B ACO 301 A 1 HETATM 15 O O3B ACO . . . C 2 6.774 5.455 -30.05 1 55.61 ? O3B ACO 301 A 1 HETATM 16 P P3B ACO . . . C 2 5.691 6.539 -30.391 1 56.08 ? P3B ACO 301 A 1 HETATM 17 O O7A ACO . . . C 2 5.99 7.522 -29.355 1 51.14 ? O7A ACO 301 A 1 HETATM 18 O O8A ACO . . . C 2 4.379 5.926 -30.234 1 60.43 ? O8A ACO 301 A 1 HETATM 19 O O9A ACO . . . C 2 5.996 6.876 -31.769 1 62.14 ? O9A ACO 301 A 1 HETATM 20 C C4B ACO . . . C 2 6.286 3.28 -29.347 1 53.31 ? C4B ACO 301 A 1 HETATM 21 O O4B ACO . . . C 2 7.481 3.044 -28.672 1 58.52 ? O4B ACO 301 A 1 HETATM 22 C C5B ACO . . . C 2 5.631 1.98 -29.752 1 50.84 ? C5B ACO 301 A 1 HETATM 23 O O5B ACO . . . C 2 6.156 1.355 -30.885 1 54.46 ? O5B ACO 301 A 1 HETATM 24 P P1A ACO . . . C 2 5.551 0.026 -31.326 1 40.79 ? P1A ACO 301 A 1 HETATM 25 O O1A ACO . . . C 2 5.583 -0.019 -32.739 1 42.84 ? O1A ACO 301 A 1 HETATM 26 O O2A ACO . . . C 2 4.299 -0.112 -30.64 1 43.47 ? O2A ACO 301 A 1 HETATM 27 O O3A ACO . . . C 2 6.634 -0.921 -30.806 1 42.52 ? O3A ACO 301 A 1 HETATM 28 P P2A ACO . . . C 2 7.028 -2.188 -31.584 1 50.15 ? P2A ACO 301 A 1 HETATM 29 O O4A ACO . . . C 2 8.333 -2.015 -32.141 1 47.04 ? O4A ACO 301 A 1 HETATM 30 O O5A ACO . . . C 2 5.869 -2.55 -32.363 1 38.13 ? O5A ACO 301 A 1 HETATM 31 O O6A ACO . . . C 2 7.263 -3.23 -30.484 1 49.84 ? O6A ACO 301 A 1 HETATM 32 C CBP ACO . . . C 2 8.552 -4.221 -28.754 1 43.62 ? CBP ACO 301 A 1 HETATM 33 C CCP ACO . . . C 2 8.002 -2.944 -29.327 1 43.99 ? CCP ACO 301 A 1 HETATM 34 C CDP ACO . . . C 2 7.461 -4.997 -28.088 1 40.87 ? CDP ACO 301 A 1 HETATM 35 C CEP ACO . . . C 2 9.577 -3.875 -27.727 1 39.86 ? CEP ACO 301 A 1 HETATM 36 C CAP ACO . . . C 2 9.14 -5.028 -29.878 1 44.34 ? CAP ACO 301 A 1 HETATM 37 O OAP ACO . . . C 2 10.387 -4.439 -30.166 1 45.81 ? OAP ACO 301 A 1 HETATM 38 C C9P ACO . . . C 2 9.355 -6.462 -29.55 1 48.5 ? C9P ACO 301 A 1 HETATM 39 O O9P ACO . . . C 2 8.565 -7.304 -29.84 1 43.8 ? O9P ACO 301 A 1 HETATM 40 N N8P ACO . . . C 2 10.472 -6.774 -28.951 1 52.03 ? N8P ACO 301 A 1 HETATM 41 C C7P ACO . . . C 2 11.045 -8.086 -28.96 1 49.3 ? C7P ACO 301 A 1 HETATM 42 C C6P ACO . . . C 2 11.092 -8.67 -27.575 1 50.19 ? C6P ACO 301 A 1 HETATM 43 C C5P ACO . . . C 2 11.316 -7.578 -26.589 1 54.68 ? C5P ACO 301 A 1 HETATM 44 O O5P ACO . . . C 2 12.32 -6.973 -26.714 1 55.96 ? O5P ACO 301 A 1 HETATM 45 N N4P ACO . . . C 2 10.427 -7.312 -25.648 1 57.93 ? N4P ACO 301 A 1 HETATM 46 C C3P ACO . . . C 2 10.564 -7.686 -24.26 1 47.55 ? C3P ACO 301 A 1 HETATM 47 C C2P ACO . . . C 2 10.51 -6.514 -23.31 1 58.93 ? C2P ACO 301 A 1 HETATM 48 S S1P ACO . . . C 2 11.474 -6.786 -21.861 1 73.97 ? S1P ACO 301 A 1 HETATM 49 C C ACO . . . C 2 10.333 -7.673 -21.032 1 63.31 ? C ACO 301 A 1 HETATM 50 O O ACO . . . C 2 10.399 -7.851 -19.829 1 60.97 ? O ACO 301 A 1 HETATM 51 C CH3 ACO . . . C 2 9.211 -8.255 -21.812 1 47.03 ? CH3 ACO 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #