data_7DAK # _model_server_result.job_id kZoy-nnhrM91bCJqCZcKuA _model_server_result.datetime_utc '2024-12-01 12:21:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7DAK # _exptl.entry_id 7DAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.242 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(5-methoxy-1H-indol-3-yl)ethanamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DAK _cell.length_a 66.382 _cell.length_b 66.815 _cell.length_c 83.497 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C11 H14 N2 O' _chem_comp.formula_weight 190.242 _chem_comp.id F5U _chem_comp.mon_nstd_flag . _chem_comp.name 2-(5-methoxy-1H-indol-3-yl)ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-Methoxytryptamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C8 F5U sing 174 n y N1 C5 F5U sing 175 n y C6 C5 F5U sing 176 n y C6 C7 F5U doub 177 n y C8 C9 F5U doub 178 n y C5 C4 F5U doub 179 n y C7 C2 F5U sing 180 n y C9 C4 F5U sing 181 n y C9 C10 F5U sing 182 n n C4 C3 F5U sing 183 n y C2 C3 F5U doub 184 n y C2 O1 F5U sing 185 n n C10 C11 F5U sing 186 n n C1 O1 F5U sing 187 n n C11 N2 F5U sing 188 n n N1 H7 F5U sing 189 n n C6 H5 F5U sing 190 n n C7 H6 F5U sing 191 n n C8 H8 F5U sing 192 n n C10 H9 F5U sing 193 n n C10 H10 F5U sing 194 n n C1 H3 F5U sing 195 n n C1 H1 F5U sing 196 n n C1 H2 F5U sing 197 n n C11 H11 F5U sing 198 n n C11 H12 F5U sing 199 n n C3 H4 F5U sing 200 n n N2 H13 F5U sing 201 n n N2 H14 F5U sing 202 n n # _atom_sites.entry_id 7DAK _atom_sites.fract_transf_matrix[1][1] 0.015064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACO A 1 301 301 ACO ACO . D 3 F5U B 1 401 401 F5U F5U . E 2 ACO B 1 402 301 ACO ACO . F 3 F5U B 1 403 401 F5U F5U . G 4 HOH A 1 401 1 HOH HOH . H 4 HOH B 1 501 2 HOH HOH . H 4 HOH B 2 502 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 F5U . . . D 3 14.93 -9.178 -18.802 1 68.08 ? N1 F5U 401 B 1 HETATM 2 C C4 F5U . . . D 3 14.304 -11.18 -19.423 1 79.54 ? C4 F5U 401 B 1 HETATM 3 C C5 F5U . . . D 3 14.195 -10.254 -18.435 1 78 ? C5 F5U 401 B 1 HETATM 4 C C6 F5U . . . D 3 13.423 -10.497 -17.306 1 67.46 ? C6 F5U 401 B 1 HETATM 5 C C7 F5U . . . D 3 12.772 -11.697 -17.199 1 68.77 ? C7 F5U 401 B 1 HETATM 6 C C8 F5U . . . D 3 15.5 -9.419 -19.998 1 68.2 ? C8 F5U 401 B 1 HETATM 7 C C10 F5U . . . D 3 15.716 -11.025 -21.741 1 70.26 ? C10 F5U 401 B 1 HETATM 8 C C1 F5U . . . D 3 13.074 -14.982 -17.918 1 57.4 ? C1 F5U 401 B 1 HETATM 9 C C11 F5U . . . D 3 14.638 -11.043 -22.797 1 69.36 ? C11 F5U 401 B 1 HETATM 10 C C2 F5U . . . D 3 12.859 -12.647 -18.197 1 69.07 ? C2 F5U 401 B 1 HETATM 11 C C3 F5U . . . D 3 13.619 -12.393 -19.312 1 68.63 ? C3 F5U 401 B 1 HETATM 12 C C9 F5U . . . D 3 15.111 -10.663 -20.394 1 80.25 ? C9 F5U 401 B 1 HETATM 13 N N2 F5U . . . D 3 14.329 -9.698 -23.21 1 67.49 ? N2 F5U 401 B 1 HETATM 14 O O1 F5U . . . D 3 12.304 -13.913 -18.357 1 75 ? O1 F5U 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #