data_7DAK # _model_server_result.job_id y6EevOKq518AcvolOfAXhA _model_server_result.datetime_utc '2024-11-29 00:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 7DAK # _exptl.entry_id 7DAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DAK _cell.length_a 66.382 _cell.length_b 66.815 _cell.length_c 83.497 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 7DAK _atom_sites.fract_transf_matrix[1][1] 0.015064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACO A 1 301 301 ACO ACO . D 3 F5U B 1 401 401 F5U F5U . E 2 ACO B 1 402 301 ACO ACO . F 3 F5U B 1 403 401 F5U F5U . G 4 HOH A 1 401 1 HOH HOH . H 4 HOH B 1 501 2 HOH HOH . H 4 HOH B 2 502 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . E 2 19.179 -3.846 5.768 1 69.63 ? N1A ACO 402 B 1 HETATM 2 C C2A ACO . . . E 2 20.257 -4.612 5.635 1 67.86 ? C2A ACO 402 B 1 HETATM 3 N N3A ACO . . . E 2 20.499 -5.669 6.386 1 67.76 ? N3A ACO 402 B 1 HETATM 4 C C4A ACO . . . E 2 19.638 -5.998 7.323 1 63.8 ? C4A ACO 402 B 1 HETATM 5 C C5A ACO . . . E 2 18.449 -5.21 7.549 1 64.4 ? C5A ACO 402 B 1 HETATM 6 C C6A ACO . . . E 2 18.256 -4.077 6.686 1 62.59 ? C6A ACO 402 B 1 HETATM 7 N N6A ACO . . . E 2 17.179 -3.308 6.81 1 56.96 ? N6A ACO 402 B 1 HETATM 8 N N7A ACO . . . E 2 17.769 -5.755 8.536 1 65.15 ? N7A ACO 402 B 1 HETATM 9 C C8A ACO . . . E 2 18.502 -6.815 8.908 1 69.66 ? C8A ACO 402 B 1 HETATM 10 N N9A ACO . . . E 2 19.602 -6.958 8.174 1 64.22 ? N9A ACO 402 B 1 HETATM 11 C C1B ACO . . . E 2 20.644 -7.964 8.34 1 66.21 ? C1B ACO 402 B 1 HETATM 12 C C2B ACO . . . E 2 20.693 -8.184 9.814 1 64.02 ? C2B ACO 402 B 1 HETATM 13 O O2B ACO . . . E 2 21.526 -7.228 10.426 1 65.44 ? O2B ACO 402 B 1 HETATM 14 C C3B ACO . . . E 2 21.235 -9.566 9.918 1 66.98 ? C3B ACO 402 B 1 HETATM 15 O O3B ACO . . . E 2 22.647 -9.531 9.845 1 68.61 ? O3B ACO 402 B 1 HETATM 16 P P3B ACO . . . E 2 23.467 -10.849 9.657 1 76.15 ? P3B ACO 402 B 1 HETATM 17 O O7A ACO . . . E 2 24.394 -10.806 10.782 1 75.86 ? O7A ACO 402 B 1 HETATM 18 O O8A ACO . . . E 2 22.47 -11.899 9.831 1 81.06 ? O8A ACO 402 B 1 HETATM 19 O O9A ACO . . . E 2 24.03 -10.722 8.309 1 67.32 ? O9A ACO 402 B 1 HETATM 20 C C4B ACO . . . E 2 20.65 -10.229 8.692 1 61.14 ? C4B ACO 402 B 1 HETATM 21 O O4B ACO . . . E 2 20.321 -9.209 7.782 1 62.5 ? O4B ACO 402 B 1 HETATM 22 C C5B ACO . . . E 2 19.415 -11.059 9.004 1 57.27 ? C5B ACO 402 B 1 HETATM 23 O O5B ACO . . . E 2 18.481 -10.373 9.761 1 50.82 ? O5B ACO 402 B 1 HETATM 24 P P1A ACO . . . E 2 17.245 -11.12 10.226 1 44.37 ? P1A ACO 402 B 1 HETATM 25 O O1A ACO . . . E 2 17.361 -11.14 11.636 1 49.03 ? O1A ACO 402 B 1 HETATM 26 O O2A ACO . . . E 2 17.14 -12.374 9.573 1 43.51 ? O2A ACO 402 B 1 HETATM 27 O O3A ACO . . . E 2 16.175 -10.098 9.753 1 51.14 ? O3A ACO 402 B 1 HETATM 28 P P2A ACO . . . E 2 14.866 -9.719 10.501 1 50.64 ? P2A ACO 402 B 1 HETATM 29 O O4A ACO . . . E 2 15.01 -8.438 11.128 1 49.62 ? O4A ACO 402 B 1 HETATM 30 O O5A ACO . . . E 2 14.408 -10.874 11.22 1 44.66 ? O5A ACO 402 B 1 HETATM 31 O O6A ACO . . . E 2 13.871 -9.486 9.374 1 51.01 ? O6A ACO 402 B 1 HETATM 32 C CBP ACO . . . E 2 13.03 -8.058 7.697 1 55.44 ? CBP ACO 402 B 1 HETATM 33 C CCP ACO . . . E 2 14.259 -8.627 8.347 1 55.59 ? CCP ACO 402 B 1 HETATM 34 C CDP ACO . . . E 2 12.102 -9.19 7.383 1 48.6 ? CDP ACO 402 B 1 HETATM 35 C CEP ACO . . . E 2 13.422 -7.343 6.44 1 52.46 ? CEP ACO 402 B 1 HETATM 36 C CAP ACO . . . E 2 12.392 -7.097 8.647 1 53.11 ? CAP ACO 402 B 1 HETATM 37 O OAP ACO . . . E 2 13.232 -5.971 8.681 1 55.98 ? OAP ACO 402 B 1 HETATM 38 C C9P ACO . . . E 2 11.031 -6.709 8.215 1 58.38 ? C9P ACO 402 B 1 HETATM 39 O O9P ACO . . . E 2 10.16 -7.51 8.183 1 56.78 ? O9P ACO 402 B 1 HETATM 40 N N8P ACO . . . E 2 10.77 -5.466 7.908 1 62.92 ? N8P ACO 402 B 1 HETATM 41 C C7P ACO . . . E 2 9.425 -4.977 7.897 1 59.41 ? C7P ACO 402 B 1 HETATM 42 C C6P ACO . . . E 2 8.743 -5.432 6.643 1 58.82 ? C6P ACO 402 B 1 HETATM 43 C C5P ACO . . . E 2 9.466 -4.896 5.435 1 65.49 ? C5P ACO 402 B 1 HETATM 44 O O5P ACO . . . E 2 9.719 -3.729 5.367 1 68.02 ? O5P ACO 402 B 1 HETATM 45 N N4P ACO . . . E 2 9.795 -5.734 4.466 1 64.34 ? N4P ACO 402 B 1 HETATM 46 C C3P ACO . . . E 2 9.709 -5.334 3.085 1 69.6 ? C3P ACO 402 B 1 HETATM 47 C C2P ACO . . . E 2 10.762 -5.938 2.177 1 61.9 ? C2P ACO 402 B 1 HETATM 48 S S1P ACO . . . E 2 10.475 -5.427 0.533 1 64.78 ? S1P ACO 402 B 1 HETATM 49 C C ACO . . . E 2 9.505 -6.736 0.18 1 65.14 ? C ACO 402 B 1 HETATM 50 O O ACO . . . E 2 9.46 -7.257 -0.924 1 56.39 ? O ACO 402 B 1 HETATM 51 C CH3 ACO . . . E 2 8.673 -7.279 1.281 1 52.54 ? CH3 ACO 402 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #