data_7DAL # _model_server_result.job_id tY64moPPSBzr5CGZfBOwNg _model_server_result.datetime_utc '2024-11-29 02:36:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 7DAL # _exptl.entry_id 7DAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.215 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DAL _cell.length_a 66.551 _cell.length_b 66.803 _cell.length_c 81.917 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CZ3 SRO sing 381 n n OH HOH SRO sing 382 n n CZ3 CE3 SRO doub 383 n y CZ3 CH2 SRO sing 384 n y CH2 CZ2 SRO doub 385 n y CH2 HH2 SRO sing 386 n n CZ2 CE2 SRO sing 387 n y CZ2 HZ2 SRO sing 388 n n CE2 NE1 SRO sing 389 n y CE2 CD2 SRO doub 390 n y NE1 CD1 SRO sing 391 n y NE1 HNE1 SRO sing 392 n n CD1 CG SRO doub 393 n y CD1 HD1 SRO sing 394 n n CG CB SRO sing 395 n n CG CD2 SRO sing 396 n y CD2 CE3 SRO sing 397 n y CE3 HE3 SRO sing 398 n n CB CA SRO sing 399 n n CB HB1 SRO sing 400 n n CB HB2 SRO sing 401 n n CA NZ SRO sing 402 n n CA HA1 SRO sing 403 n n CA HA2 SRO sing 404 n n NZ HNZ1 SRO sing 405 n n NZ HNZ2 SRO sing 406 n n # _atom_sites.entry_id 7DAL _atom_sites.fract_transf_matrix[1][1] 0.015026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACO A 1 301 301 ACO ACO . D 3 SRO A 1 302 401 SRO SRO . E 2 ACO B 1 301 301 ACO ACO . F 3 SRO B 1 302 401 SRO SRO . G 4 HOH A 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . F 3 4.16 -5.231 -0.504 1 91.46 ? OH SRO 302 B 1 HETATM 2 C CZ3 SRO . . . F 3 3.943 -4.047 0.236 1 98.13 ? CZ3 SRO 302 B 1 HETATM 3 C CH2 SRO . . . F 3 2.65 -3.665 0.607 1 94.78 ? CH2 SRO 302 B 1 HETATM 4 C CZ2 SRO . . . F 3 2.425 -2.503 1.342 1 93.3 ? CZ2 SRO 302 B 1 HETATM 5 C CE2 SRO . . . F 3 3.528 -1.698 1.716 1 100.43 ? CE2 SRO 302 B 1 HETATM 6 N NE1 SRO . . . F 3 3.642 -0.516 2.425 1 96.25 ? NE1 SRO 302 B 1 HETATM 7 C CD1 SRO . . . F 3 4.97 -0.192 2.486 1 94.82 ? CD1 SRO 302 B 1 HETATM 8 C CG SRO . . . F 3 5.684 -1.166 1.813 1 94.06 ? CG SRO 302 B 1 HETATM 9 C CD2 SRO . . . F 3 4.795 -2.083 1.348 1 99.38 ? CD2 SRO 302 B 1 HETATM 10 C CE3 SRO . . . F 3 5.01 -3.254 0.605 1 97.17 ? CE3 SRO 302 B 1 HETATM 11 C CB SRO . . . F 3 7.206 -1.025 1.747 1 91.17 ? CB SRO 302 B 1 HETATM 12 C CA SRO . . . F 3 7.824 -2.07 2.679 1 93.51 ? CA SRO 302 B 1 HETATM 13 N NZ SRO . . . F 3 9.118 -2.526 2.191 1 92.05 ? NZ SRO 302 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #