data_7DB6
#
_model_server_result.job_id            a2Cw8gkt-J9hcgRWWrtZDw 
_model_server_result.datetime_utc      '2025-03-05 20:11:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7db6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    7DB6 
#
_exptl.entry_id    7DB6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              259.343 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{2-[(8S)-1,6,7,8-tetrahydro-2H-indeno[5,4-b]furan-8-yl]ethyl}propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DB6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 107 B CYS 103 1_555 B SG CYS 118 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf2 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 D SG CYS 159 E CYS 147 1_555 D SG CYS 229 E CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 E SG CYS 126 D CYS 100 1_555 E SG CYS 203 D CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C16 H21 N O2' 
_chem_comp.formula_weight    259.343 
_chem_comp.id                JEV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{2-[(8S)-1,6,7,8-tetrahydro-2H-indeno[5,4-b]furan-8-yl]ethyl}propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Ramelteon 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C3 JEV doub 171 n n 
C1 C2 JEV sing 172 n n 
C3 C2 JEV sing 173 n n 
C3 N1 JEV sing 174 n n 
C4 N1 JEV sing 175 n n 
C4 C5 JEV sing 176 n n 
C5 C6 JEV sing 177 n n 
C7 C6 JEV sing 178 n n 
C7 C8 JEV sing 179 n n 
C6 C16 JEV sing 180 n n 
C8 C9 JEV sing 181 n n 
C16 C9 JEV doub 182 n y 
C16 C13 JEV sing 183 n y 
C9 C10 JEV sing 184 n y 
C13 C14 JEV sing 185 n n 
C13 C12 JEV doub 186 n y 
C10 C11 JEV doub 187 n y 
C14 C15 JEV sing 188 n n 
C12 C11 JEV sing 189 n y 
C12 O1 JEV sing 190 n n 
C15 O1 JEV sing 191 n n 
C4 H1 JEV sing 192 n n 
C4 H2 JEV sing 193 n n 
C2 H3 JEV sing 194 n n 
C2 H4 JEV sing 195 n n 
C1 H5 JEV sing 196 n n 
C1 H6 JEV sing 197 n n 
C1 H7 JEV sing 198 n n 
C7 H8 JEV sing 199 n n 
C7 H9 JEV sing 200 n n 
C8 H10 JEV sing 201 n n 
C8 H11 JEV sing 202 n n 
C10 H12 JEV sing 203 n n 
C11 H13 JEV sing 204 n n 
C15 H14 JEV sing 205 n n 
C15 H15 JEV sing 206 n n 
C14 H16 JEV sing 207 n n 
C14 H17 JEV sing 208 n n 
C6 H18 JEV sing 209 n n 
C5 H19 JEV sing 210 n n 
C5 H20 JEV sing 211 n n 
N1 H21 JEV sing 212 n n 
#
_atom_sites.entry_id                     7DB6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           JEV 
_pdbx_nonpoly_scheme.pdb_strand_id    D 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       JEV 
_pdbx_nonpoly_scheme.auth_mon_id      JEV 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 JEV . . . F 6 132.13 100.793 106.542 1 148.75 ? C4 JEV 401 D 1 
HETATM 2 C C3 JEV . . . F 6 133.857 101.284 104.88 1 148.75 ? C3 JEV 401 D 1 
HETATM 3 C C2 JEV . . . F 6 134.282 101.123 103.446 1 148.75 ? C2 JEV 401 D 1 
HETATM 4 O O2 JEV . . . F 6 134.541 101.899 105.693 1 148.75 ? O2 JEV 401 D 1 
HETATM 5 C C1 JEV . . . F 6 135.256 99.99 103.248 1 148.75 ? C1 JEV 401 D 1 
HETATM 6 O O1 JEV . . . F 6 130.63 94.216 107.414 1 148.75 ? O1 JEV 401 D 1 
HETATM 7 C C7 JEV . . . F 6 130.341 99.868 109.133 1 148.75 ? C7 JEV 401 D 1 
HETATM 8 C C8 JEV . . . F 6 130.826 99.003 110.302 1 148.75 ? C8 JEV 401 D 1 
HETATM 9 C C9 JEV . . . F 6 130.82 97.617 109.721 1 148.75 ? C9 JEV 401 D 1 
HETATM 10 C C10 JEV . . . F 6 130.88 96.392 110.374 1 148.75 ? C10 JEV 401 D 1 
HETATM 11 C C11 JEV . . . F 6 130.832 95.205 109.667 1 148.75 ? C11 JEV 401 D 1 
HETATM 12 C C12 JEV . . . F 6 130.726 95.277 108.29 1 148.75 ? C12 JEV 401 D 1 
HETATM 13 C C15 JEV . . . F 6 130.77 94.737 106.063 1 148.75 ? C15 JEV 401 D 1 
HETATM 14 C C14 JEV . . . F 6 130.605 96.236 106.127 1 148.75 ? C14 JEV 401 D 1 
HETATM 15 C C13 JEV . . . F 6 130.68 96.481 107.608 1 148.75 ? C13 JEV 401 D 1 
HETATM 16 C C16 JEV . . . F 6 130.726 97.675 108.334 1 148.75 ? C16 JEV 401 D 1 
HETATM 17 C C6 JEV . . . F 6 130.708 99.103 107.834 1 148.75 ? C6 JEV 401 D 1 
HETATM 18 C C5 JEV . . . F 6 132.076 99.434 107.215 1 148.75 ? C5 JEV 401 D 1 
HETATM 19 N N1 JEV . . . F 6 132.696 100.721 105.204 1 148.75 ? N1 JEV 401 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           19 
#