data_7DBB # _model_server_result.job_id OdW5Ri8rawhX_MXWFXKTow _model_server_result.datetime_utc '2024-11-23 00:10:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":507}' # _entry.id 7DBB # _exptl.entry_id 7DBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 371.453 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-phenyl-3-(3,4,5-trimethoxyphenyl)-3,4-dihydropyrazole-2-carbothioamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DBB _cell.length_a 105 _cell.length_b 157.573 _cell.length_c 181.629 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc10 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc11 B OE1 GLU 111 B GLU 113 1_555 M CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc12 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc13 C OD1 ASP 39 C ASP 39 1_555 T CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc14 C OD2 ASP 39 C ASP 39 1_555 T CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc15 C O THR 41 C THR 41 1_555 T CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc16 C OG1 THR 41 C THR 41 1_555 T CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc17 C O GLY 44 C GLY 44 1_555 T CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc18 C OE1 GLU 55 C GLU 55 1_555 T CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc19 R O1G GTP . C GTP 501 1_555 S MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc20 R O1B GTP . C GTP 501 1_555 S MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc21 U MG MG . D MG 601 1_555 V O3G GTP . D GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc22 U MG MG . D MG 601 1_555 V O2B GTP . D GTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C19 H21 N3 O3 S' _chem_comp.formula_weight 371.453 _chem_comp.id H1F _chem_comp.mon_nstd_flag . _chem_comp.name 5-phenyl-3-(3,4,5-trimethoxyphenyl)-3,4-dihydropyrazole-2-carbothioamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 O01 H1F sing 275 n n O01 C12 H1F sing 276 n n O02 C17 H1F sing 277 n n O02 C13 H1F sing 278 n n C12 C13 H1F doub 279 n y C12 C11 H1F sing 280 n y C13 C14 H1F sing 281 n y C11 C10 H1F doub 282 n y C14 O03 H1F sing 283 n n C14 C15 H1F doub 284 n y S01 C19 H1F doub 285 n n C10 C15 H1F sing 286 n y C10 C09 H1F sing 287 n n O03 C18 H1F sing 288 n n C09 N01 H1F sing 289 n n C09 C08 H1F sing 290 n n C19 N01 H1F sing 291 n n C19 N03 H1F sing 292 n n N01 N02 H1F sing 293 n n C08 C07 H1F sing 294 n n N02 C07 H1F doub 295 n n C07 C04 H1F sing 296 n n C03 C04 H1F doub 297 n y C03 C02 H1F sing 298 n y C04 C05 H1F sing 299 n y C02 C01 H1F doub 300 n y C05 C06 H1F doub 301 n y C01 C06 H1F sing 302 n y C01 H1 H1F sing 303 n n C02 H2 H1F sing 304 n n C03 H3 H1F sing 305 n n C05 H4 H1F sing 306 n n C06 H5 H1F sing 307 n n C08 H6 H1F sing 308 n n C11 H7 H1F sing 309 n n C15 H8 H1F sing 310 n n C16 H9 H1F sing 311 n n C16 H10 H1F sing 312 n n C16 H11 H1F sing 313 n n C17 H12 H1F sing 314 n n C17 H13 H1F sing 315 n n C17 H14 H1F sing 316 n n C18 H15 H1F sing 317 n n C18 H16 H1F sing 318 n n C18 H17 H1F sing 319 n n N03 H20 H1F sing 320 n n N03 H21 H1F sing 321 n n C08 H18 H1F sing 322 n n C09 H19 H1F sing 323 n n # _atom_sites.entry_id 7DBB _atom_sites.fract_transf_matrix[1][1] 0.009524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 7 CA A 1 504 505 CA CA . K 8 GDP B 1 501 501 GDP GDP . L 6 MG B 1 502 502 MG MG . M 7 CA B 1 503 503 CA CA . N 9 MES B 1 504 504 MES MES . O 9 MES B 1 505 505 MES MES . P 6 MG B 1 506 506 MG MG . Q 10 H1F B 1 507 601 H1F SSE . R 5 GTP C 1 501 501 GTP GTP . S 6 MG C 1 502 502 MG MG . T 7 CA C 1 503 503 CA CA . U 6 MG D 1 601 601 MG MG . V 5 GTP D 1 602 701 GTP GTP . W 11 ACP F 1 401 703 ACP ACP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 H1F . . . Q 10 17.09 65.876 41.766 1 47.67 ? C10 H1F 507 B 1 HETATM 2 C C01 H1F . . . Q 10 16.728 63.027 48.212 1 45.37 ? C01 H1F 507 B 1 HETATM 3 C C02 H1F . . . Q 10 16.625 62.34 47.017 1 46.29 ? C02 H1F 507 B 1 HETATM 4 C C03 H1F . . . Q 10 17.011 62.948 45.839 1 51.52 ? C03 H1F 507 B 1 HETATM 5 C C04 H1F . . . Q 10 17.519 64.231 45.87 1 57.57 ? C04 H1F 507 B 1 HETATM 6 C C05 H1F . . . Q 10 17.619 64.916 47.072 1 58.11 ? C05 H1F 507 B 1 HETATM 7 C C06 H1F . . . Q 10 17.224 64.308 48.242 1 30.01 ? C06 H1F 507 B 1 HETATM 8 C C07 H1F . . . Q 10 17.963 64.93 44.563 1 50.13 ? C07 H1F 507 B 1 HETATM 9 C C08 H1F . . . Q 10 17.956 64.344 43.273 1 54.88 ? C08 H1F 507 B 1 HETATM 10 C C09 H1F . . . Q 10 18.543 65.365 42.304 1 49 ? C09 H1F 507 B 1 HETATM 11 C C11 H1F . . . Q 10 15.842 66.049 42.438 1 60.79 ? C11 H1F 507 B 1 HETATM 12 C C12 H1F . . . Q 10 14.665 66.394 41.756 1 70.14 ? C12 H1F 507 B 1 HETATM 13 C C13 H1F . . . Q 10 14.659 66.507 40.385 1 61.82 ? C13 H1F 507 B 1 HETATM 14 C C14 H1F . . . Q 10 15.81 66.284 39.68 1 54.82 ? C14 H1F 507 B 1 HETATM 15 C C15 H1F . . . Q 10 16.99 65.944 40.366 1 57.18 ? C15 H1F 507 B 1 HETATM 16 C C16 H1F . . . Q 10 13.665 67.61 43.424 1 59.35 ? C16 H1F 507 B 1 HETATM 17 C C17 H1F . . . Q 10 13.105 65.734 38.884 1 54.81 ? C17 H1F 507 B 1 HETATM 18 C C18 H1F . . . Q 10 16.863 66.268 37.533 1 58.26 ? C18 H1F 507 B 1 HETATM 19 C C19 H1F . . . Q 10 19.023 67.914 42.791 1 49.86 ? C19 H1F 507 B 1 HETATM 20 N N01 H1F . . . Q 10 18.397 66.64 43.073 1 72.05 ? N01 H1F 507 B 1 HETATM 21 N N02 H1F . . . Q 10 17.784 66.38 44.324 1 70.61 ? N02 H1F 507 B 1 HETATM 22 N N03 H1F . . . Q 10 18.88 69.016 43.719 1 92.31 ? N03 H1F 507 B 1 HETATM 23 O O01 H1F . . . Q 10 13.474 66.621 42.457 1 68.36 ? O01 H1F 507 B 1 HETATM 24 O O02 H1F . . . Q 10 13.499 66.822 39.681 1 64.48 ? O02 H1F 507 B 1 HETATM 25 O O03 H1F . . . Q 10 15.688 66.425 38.285 1 56.88 ? O03 H1F 507 B 1 HETATM 26 S S01 H1F . . . Q 10 19.76 68.169 41.448 1 93.65 ? S01 H1F 507 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #